{"id":"https://openalex.org/W2140028978","doi":"https://doi.org/10.1093/bioinformatics/btq429","title":"Datamonkey 2010: a suite of phylogenetic analysis tools for evolutionary biology","display_name":"Datamonkey 2010: a suite of phylogenetic analysis tools for evolutionary biology","publication_year":2010,"publication_date":"2010-07-29","ids":{"openalex":"https://openalex.org/W2140028978","doi":"https://doi.org/10.1093/bioinformatics/btq429","mag":"2140028978","pmid":"https://pubmed.ncbi.nlm.nih.gov/20671151"},"language":"en","primary_location":{"id":"doi:10.1093/bioinformatics/btq429","is_oa":true,"landing_page_url":"https://doi.org/10.1093/bioinformatics/btq429","pdf_url":"https://academic.oup.com/bioinformatics/article-pdf/26/19/2455/48854971/bioinformatics_26_19_2455.pdf","source":{"id":"https://openalex.org/S52395412","display_name":"Bioinformatics","issn_l":"1367-4803","issn":["1367-4803","1367-4811"],"is_oa":false,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310311648","host_organization_name":"Oxford University Press","host_organization_lineage":["https://openalex.org/P4310311648","https://openalex.org/P4310311647"],"host_organization_lineage_names":["Oxford University Press","University of Oxford"],"type":"journal"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Bioinformatics","raw_type":"journal-article"},"type":"article","indexed_in":["crossref","doaj","pubmed"],"open_access":{"is_oa":true,"oa_status":"bronze","oa_url":"https://academic.oup.com/bioinformatics/article-pdf/26/19/2455/48854971/bioinformatics_26_19_2455.pdf","any_repository_has_fulltext":true},"authorships":[{"author_position":"first","author":{"id":"https://openalex.org/A5046640566","display_name":"Wayne Delport","orcid":null},"institutions":[{"id":"https://openalex.org/I36258959","display_name":"University of California, San Diego","ror":"https://ror.org/0168r3w48","country_code":"US","type":"education","lineage":["https://openalex.org/I36258959"]},{"id":"https://openalex.org/I4210131951","display_name":"AIDS Vancouver","ror":"https://ror.org/02mgny734","country_code":"CA","type":"nonprofit","lineage":["https://openalex.org/I4210131951"]},{"id":"https://openalex.org/I241749","display_name":"University of Cambridge","ror":"https://ror.org/013meh722","country_code":"GB","type":"education","lineage":["https://openalex.org/I241749"]}],"countries":["CA","GB","US"],"is_corresponding":true,"raw_author_name":"Wayne Delport","raw_affiliation_strings":["1 Department of Pathology, Antiviral Research Center, University of California, San Diego, CA, USA, 2British Columbia Centre for Excellence in HIV/AIDS, Vancouver, British Columbia, Canada, 3Department of Veterinary Medicine, University of Cambridge, Cambridge, UK and 4Department of Medicine, Antiviral Research Center, University of California, San Diego, CA, USA"],"affiliations":[{"raw_affiliation_string":"1 Department of Pathology, Antiviral Research Center, University of California, San Diego, CA, USA, 2British Columbia Centre for Excellence in HIV/AIDS, Vancouver, British Columbia, Canada, 3Department of Veterinary Medicine, University of Cambridge, Cambridge, UK and 4Department of Medicine, Antiviral Research Center, University of California, San Diego, CA, USA","institution_ids":["https://openalex.org/I4210131951","https://openalex.org/I36258959","https://openalex.org/I241749"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5004110504","display_name":"Art F. Y. Poon","orcid":"https://orcid.org/0000-0003-3779-154X"},"institutions":[{"id":"https://openalex.org/I36258959","display_name":"University of California, San Diego","ror":"https://ror.org/0168r3w48","country_code":"US","type":"education","lineage":["https://openalex.org/I36258959"]},{"id":"https://openalex.org/I4210131951","display_name":"AIDS Vancouver","ror":"https://ror.org/02mgny734","country_code":"CA","type":"nonprofit","lineage":["https://openalex.org/I4210131951"]},{"id":"https://openalex.org/I241749","display_name":"University of Cambridge","ror":"https://ror.org/013meh722","country_code":"GB","type":"education","lineage":["https://openalex.org/I241749"]}],"countries":["CA","GB","US"],"is_corresponding":false,"raw_author_name":"Art F. Y. Poon","raw_affiliation_strings":["1 Department of Pathology, Antiviral Research Center, University of California, San Diego, CA, USA, 2British Columbia Centre for Excellence in HIV/AIDS, Vancouver, British Columbia, Canada, 3Department of Veterinary Medicine, University of Cambridge, Cambridge, UK and 4Department of Medicine, Antiviral Research Center, University of California, San Diego, CA, USA"],"affiliations":[{"raw_affiliation_string":"1 Department of Pathology, Antiviral Research Center, University of California, San Diego, CA, USA, 2British Columbia Centre for Excellence in HIV/AIDS, Vancouver, British Columbia, Canada, 3Department of Veterinary Medicine, University of Cambridge, Cambridge, UK and 4Department of Medicine, Antiviral Research Center, University of California, San Diego, CA, USA","institution_ids":["https://openalex.org/I4210131951","https://openalex.org/I36258959","https://openalex.org/I241749"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5071190932","display_name":"Simon D. W. Frost","orcid":"https://orcid.org/0000-0002-5207-9879"},"institutions":[{"id":"https://openalex.org/I36258959","display_name":"University of California, San Diego","ror":"https://ror.org/0168r3w48","country_code":"US","type":"education","lineage":["https://openalex.org/I36258959"]},{"id":"https://openalex.org/I4210131951","display_name":"AIDS Vancouver","ror":"https://ror.org/02mgny734","country_code":"CA","type":"nonprofit","lineage":["https://openalex.org/I4210131951"]},{"id":"https://openalex.org/I241749","display_name":"University of Cambridge","ror":"https://ror.org/013meh722","country_code":"GB","type":"education","lineage":["https://openalex.org/I241749"]}],"countries":["CA","GB","US"],"is_corresponding":false,"raw_author_name":"Simon D. W. Frost","raw_affiliation_strings":["1 Department of Pathology, Antiviral Research Center, University of California, San Diego, CA, USA, 2British Columbia Centre for Excellence in HIV/AIDS, Vancouver, British Columbia, Canada, 3Department of Veterinary Medicine, University of Cambridge, Cambridge, UK and 4Department of Medicine, Antiviral Research Center, University of California, San Diego, CA, USA"],"affiliations":[{"raw_affiliation_string":"1 Department of Pathology, Antiviral Research Center, University of California, San Diego, CA, USA, 2British Columbia Centre for Excellence in HIV/AIDS, Vancouver, British Columbia, Canada, 3Department of Veterinary Medicine, University of Cambridge, Cambridge, UK and 4Department of Medicine, Antiviral Research Center, University of California, San Diego, CA, USA","institution_ids":["https://openalex.org/I4210131951","https://openalex.org/I36258959","https://openalex.org/I241749"]}]},{"author_position":"last","author":{"id":"https://openalex.org/A5011410563","display_name":"Sergei L. Kosakovsky Pond","orcid":"https://orcid.org/0000-0003-4817-4029"},"institutions":[{"id":"https://openalex.org/I36258959","display_name":"University of California, San Diego","ror":"https://ror.org/0168r3w48","country_code":"US","type":"education","lineage":["https://openalex.org/I36258959"]},{"id":"https://openalex.org/I4210131951","display_name":"AIDS Vancouver","ror":"https://ror.org/02mgny734","country_code":"CA","type":"nonprofit","lineage":["https://openalex.org/I4210131951"]},{"id":"https://openalex.org/I241749","display_name":"University of Cambridge","ror":"https://ror.org/013meh722","country_code":"GB","type":"education","lineage":["https://openalex.org/I241749"]}],"countries":["CA","GB","US"],"is_corresponding":false,"raw_author_name":"Sergei L. Kosakovsky Pond","raw_affiliation_strings":["1 Department of Pathology, Antiviral Research Center, University of California, San Diego, CA, USA, 2British Columbia Centre for Excellence in HIV/AIDS, Vancouver, British Columbia, Canada, 3Department of Veterinary Medicine, University of Cambridge, Cambridge, UK and 4Department of Medicine, Antiviral Research Center, University of California, San Diego, CA, USA"],"affiliations":[{"raw_affiliation_string":"1 Department of Pathology, Antiviral Research Center, University of California, San Diego, CA, USA, 2British Columbia Centre for Excellence in HIV/AIDS, Vancouver, British Columbia, Canada, 3Department of Veterinary Medicine, University of Cambridge, Cambridge, UK and 4Department of Medicine, Antiviral Research Center, University of California, San Diego, CA, USA","institution_ids":["https://openalex.org/I4210131951","https://openalex.org/I36258959","https://openalex.org/I241749"]}]}],"institutions":[],"countries_distinct_count":3,"institutions_distinct_count":4,"corresponding_author_ids":["https://openalex.org/A5046640566"],"corresponding_institution_ids":["https://openalex.org/I241749","https://openalex.org/I36258959","https://openalex.org/I4210131951"],"apc_list":{"value":3618,"currency":"USD","value_usd":3618},"apc_paid":null,"fwci":25.3461,"has_fulltext":false,"cited_by_count":1235,"citation_normalized_percentile":{"value":0.99789876,"is_in_top_1_percent":true,"is_in_top_10_percent":true},"cited_by_percentile_year":{"min":99,"max":100},"biblio":{"volume":"26","issue":"19","first_page":"2455","last_page":"2457"},"is_retracted":false,"is_paratext":false,"is_xpac":false,"primary_topic":{"id":"https://openalex.org/T10015","display_name":"Genomics and Phylogenetic Studies","score":0.9995999932289124,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},"topics":[{"id":"https://openalex.org/T10015","display_name":"Genomics and Phylogenetic Studies","score":0.9995999932289124,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},{"id":"https://openalex.org/T10521","display_name":"RNA and protein synthesis mechanisms","score":0.9828000068664551,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},{"id":"https://openalex.org/T10012","display_name":"Genetic diversity and population structure","score":0.9753000140190125,"subfield":{"id":"https://openalex.org/subfields/1311","display_name":"Genetics"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}}],"keywords":[{"id":"https://openalex.org/keywords/suite","display_name":"Suite","score":0.6957728266716003},{"id":"https://openalex.org/keywords/phylogenetic-tree","display_name":"Phylogenetic tree","score":0.693701982498169},{"id":"https://openalex.org/keywords/biology","display_name":"Biology","score":0.5484011769294739},{"id":"https://openalex.org/keywords/identification","display_name":"Identification (biology)","score":0.5417711138725281},{"id":"https://openalex.org/keywords/documentation","display_name":"Documentation","score":0.524807333946228},{"id":"https://openalex.org/keywords/selection","display_name":"Selection (genetic algorithm)","score":0.5122331976890564},{"id":"https://openalex.org/keywords/computer-science","display_name":"Computer science","score":0.4293529689311981},{"id":"https://openalex.org/keywords/evolutionary-biology","display_name":"Evolutionary biology","score":0.41606220602989197},{"id":"https://openalex.org/keywords/computational-biology","display_name":"Computational biology","score":0.36699289083480835},{"id":"https://openalex.org/keywords/data-science","display_name":"Data science","score":0.3290252983570099},{"id":"https://openalex.org/keywords/machine-learning","display_name":"Machine learning","score":0.20680660009384155},{"id":"https://openalex.org/keywords/genetics","display_name":"Genetics","score":0.17676317691802979},{"id":"https://openalex.org/keywords/gene","display_name":"Gene","score":0.14520162343978882},{"id":"https://openalex.org/keywords/ecology","display_name":"Ecology","score":0.12207001447677612},{"id":"https://openalex.org/keywords/geography","display_name":"Geography","score":0.08831992745399475},{"id":"https://openalex.org/keywords/programming-language","display_name":"Programming language","score":0.07545885443687439}],"concepts":[{"id":"https://openalex.org/C79581498","wikidata":"https://www.wikidata.org/wiki/Q1367530","display_name":"Suite","level":2,"score":0.6957728266716003},{"id":"https://openalex.org/C193252679","wikidata":"https://www.wikidata.org/wiki/Q242125","display_name":"Phylogenetic tree","level":3,"score":0.693701982498169},{"id":"https://openalex.org/C86803240","wikidata":"https://www.wikidata.org/wiki/Q420","display_name":"Biology","level":0,"score":0.5484011769294739},{"id":"https://openalex.org/C116834253","wikidata":"https://www.wikidata.org/wiki/Q2039217","display_name":"Identification (biology)","level":2,"score":0.5417711138725281},{"id":"https://openalex.org/C56666940","wikidata":"https://www.wikidata.org/wiki/Q788790","display_name":"Documentation","level":2,"score":0.524807333946228},{"id":"https://openalex.org/C81917197","wikidata":"https://www.wikidata.org/wiki/Q628760","display_name":"Selection (genetic algorithm)","level":2,"score":0.5122331976890564},{"id":"https://openalex.org/C41008148","wikidata":"https://www.wikidata.org/wiki/Q21198","display_name":"Computer science","level":0,"score":0.4293529689311981},{"id":"https://openalex.org/C78458016","wikidata":"https://www.wikidata.org/wiki/Q840400","display_name":"Evolutionary biology","level":1,"score":0.41606220602989197},{"id":"https://openalex.org/C70721500","wikidata":"https://www.wikidata.org/wiki/Q177005","display_name":"Computational biology","level":1,"score":0.36699289083480835},{"id":"https://openalex.org/C2522767166","wikidata":"https://www.wikidata.org/wiki/Q2374463","display_name":"Data science","level":1,"score":0.3290252983570099},{"id":"https://openalex.org/C119857082","wikidata":"https://www.wikidata.org/wiki/Q2539","display_name":"Machine learning","level":1,"score":0.20680660009384155},{"id":"https://openalex.org/C54355233","wikidata":"https://www.wikidata.org/wiki/Q7162","display_name":"Genetics","level":1,"score":0.17676317691802979},{"id":"https://openalex.org/C104317684","wikidata":"https://www.wikidata.org/wiki/Q7187","display_name":"Gene","level":2,"score":0.14520162343978882},{"id":"https://openalex.org/C18903297","wikidata":"https://www.wikidata.org/wiki/Q7150","display_name":"Ecology","level":1,"score":0.12207001447677612},{"id":"https://openalex.org/C205649164","wikidata":"https://www.wikidata.org/wiki/Q1071","display_name":"Geography","level":0,"score":0.08831992745399475},{"id":"https://openalex.org/C199360897","wikidata":"https://www.wikidata.org/wiki/Q9143","display_name":"Programming language","level":1,"score":0.07545885443687439},{"id":"https://openalex.org/C166957645","wikidata":"https://www.wikidata.org/wiki/Q23498","display_name":"Archaeology","level":1,"score":0.0}],"mesh":[{"descriptor_ui":"D000465","descriptor_name":"Algorithms","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D000465","descriptor_name":"Algorithms","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D000465","descriptor_name":"Algorithms","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D010802","descriptor_name":"Phylogeny","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D010802","descriptor_name":"Phylogeny","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D010802","descriptor_name":"Phylogeny","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D012984","descriptor_name":"Software","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D012984","descriptor_name":"Software","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D012984","descriptor_name":"Software","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D015497","descriptor_name":"HIV-1","qualifier_ui":"Q000235","qualifier_name":"genetics","is_major_topic":false},{"descriptor_ui":"D015497","descriptor_name":"HIV-1","qualifier_ui":"Q000235","qualifier_name":"genetics","is_major_topic":false},{"descriptor_ui":"D015497","descriptor_name":"HIV-1","qualifier_ui":"Q000235","qualifier_name":"genetics","is_major_topic":false},{"descriptor_ui":"D019143","descriptor_name":"Evolution, Molecular","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D019143","descriptor_name":"Evolution, Molecular","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D019143","descriptor_name":"Evolution, Molecular","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D019295","descriptor_name":"Computational Biology","qualifier_ui":"Q000379","qualifier_name":"methods","is_major_topic":false},{"descriptor_ui":"D019295","descriptor_name":"Computational Biology","qualifier_ui":"Q000379","qualifier_name":"methods","is_major_topic":false},{"descriptor_ui":"D019295","descriptor_name":"Computational Biology","qualifier_ui":"Q000379","qualifier_name":"methods","is_major_topic":false},{"descriptor_ui":"D020407","descriptor_name":"Internet","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D020407","descriptor_name":"Internet","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D020407","descriptor_name":"Internet","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false}],"locations_count":3,"locations":[{"id":"doi:10.1093/bioinformatics/btq429","is_oa":true,"landing_page_url":"https://doi.org/10.1093/bioinformatics/btq429","pdf_url":"https://academic.oup.com/bioinformatics/article-pdf/26/19/2455/48854971/bioinformatics_26_19_2455.pdf","source":{"id":"https://openalex.org/S52395412","display_name":"Bioinformatics","issn_l":"1367-4803","issn":["1367-4803","1367-4811"],"is_oa":false,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310311648","host_organization_name":"Oxford University Press","host_organization_lineage":["https://openalex.org/P4310311648","https://openalex.org/P4310311647"],"host_organization_lineage_names":["Oxford University Press","University of Oxford"],"type":"journal"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Bioinformatics","raw_type":"journal-article"},{"id":"pmid:20671151","is_oa":false,"landing_page_url":"https://pubmed.ncbi.nlm.nih.gov/20671151","pdf_url":null,"source":{"id":"https://openalex.org/S4306525036","display_name":"PubMed","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I1299303238","host_organization_name":"National Institutes of Health","host_organization_lineage":["https://openalex.org/I1299303238"],"host_organization_lineage_names":[],"type":"repository"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Bioinformatics (Oxford, England)","raw_type":null},{"id":"pmh:oai:pubmedcentral.nih.gov:2944195","is_oa":true,"landing_page_url":"https://www.ncbi.nlm.nih.gov/pmc/articles/2944195","pdf_url":null,"source":{"id":"https://openalex.org/S2764455111","display_name":"PubMed Central","issn_l":null,"issn":null,"is_oa":true,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I1299303238","host_organization_name":"National Institutes of Health","host_organization_lineage":["https://openalex.org/I1299303238"],"host_organization_lineage_names":[],"type":"repository"},"license":null,"license_id":null,"version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":"Bioinformatics","raw_type":"Text"}],"best_oa_location":{"id":"doi:10.1093/bioinformatics/btq429","is_oa":true,"landing_page_url":"https://doi.org/10.1093/bioinformatics/btq429","pdf_url":"https://academic.oup.com/bioinformatics/article-pdf/26/19/2455/48854971/bioinformatics_26_19_2455.pdf","source":{"id":"https://openalex.org/S52395412","display_name":"Bioinformatics","issn_l":"1367-4803","issn":["1367-4803","1367-4811"],"is_oa":false,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310311648","host_organization_name":"Oxford University Press","host_organization_lineage":["https://openalex.org/P4310311648","https://openalex.org/P4310311647"],"host_organization_lineage_names":["Oxford University Press","University of Oxford"],"type":"journal"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Bioinformatics","raw_type":"journal-article"},"sustainable_development_goals":[{"score":0.6100000143051147,"display_name":"Good health and well-being","id":"https://metadata.un.org/sdg/3"}],"awards":[],"funders":[],"has_content":{"pdf":true,"grobid_xml":true},"content_urls":{"pdf":"https://content.openalex.org/works/W2140028978.pdf","grobid_xml":"https://content.openalex.org/works/W2140028978.grobid-xml"},"referenced_works_count":21,"referenced_works":["https://openalex.org/W1964475452","https://openalex.org/W1987906244","https://openalex.org/W2009596137","https://openalex.org/W2038978937","https://openalex.org/W2061140759","https://openalex.org/W2070519435","https://openalex.org/W2086631924","https://openalex.org/W2100820635","https://openalex.org/W2111762123","https://openalex.org/W2112011866","https://openalex.org/W2122185601","https://openalex.org/W2131203559","https://openalex.org/W2133585817","https://openalex.org/W2135509505","https://openalex.org/W2136847298","https://openalex.org/W2138178197","https://openalex.org/W2144654387","https://openalex.org/W2147710356","https://openalex.org/W2157164556","https://openalex.org/W2159620937","https://openalex.org/W2170565120"],"related_works":["https://openalex.org/W4231704780","https://openalex.org/W2083794993","https://openalex.org/W2618286804","https://openalex.org/W352609212","https://openalex.org/W2329643025","https://openalex.org/W1511772879","https://openalex.org/W4200340037","https://openalex.org/W4379115841","https://openalex.org/W3131163342","https://openalex.org/W2166271660"],"abstract_inverted_index":{"Datamonkey":[0],"is":[1],"a":[2],"popular":[3],"web-based":[4],"suite":[5],"of":[6,38,47],"phylogenetic":[7],"analysis":[8,25],"tools":[9,61],"for":[10,33,86],"use":[11,88],"in":[12,19,70,89],"evolutionary":[13,36,90],"biology.":[14,91],"Since":[15],"the":[16,24,71,76],"original":[17],"release":[18],"2005,":[20],"we":[21,74],"have":[22,62],"expanded":[23],"options":[26,78],"to":[27,66],"include":[28,67],"recently":[29],"developed":[30],"algorithmic":[31],"methods":[32],"recombination":[34],"detection,":[35],"fingerprinting":[37],"genes,":[39],"codon":[40],"model":[41],"selection,":[42],"co-evolution":[43],"between":[44],"sites,":[45,48],"identification":[46],"which":[49],"rapidly":[50],"escape":[51],"host-immune":[52],"pressure":[53],"and":[54,83,93],"HIV-1":[55],"subtype":[56],"assignment.":[57],"The":[58],"traditional":[59],"selection":[60],"also":[63],"been":[64],"augmented":[65],"recent":[68],"developments":[69],"field.":[72],"Here,":[73],"summarize":[75],"analyses":[77],"currently":[79],"available":[80],"on":[81],"Datamonkey,":[82],"provide":[84],"guidelines":[85],"their":[87],"Availability":[92],"documentation:":[94],"http://www.datamonkey.org.":[95]},"counts_by_year":[{"year":2026,"cited_by_count":7},{"year":2025,"cited_by_count":24},{"year":2024,"cited_by_count":39},{"year":2023,"cited_by_count":29},{"year":2022,"cited_by_count":43},{"year":2021,"cited_by_count":81},{"year":2020,"cited_by_count":82},{"year":2019,"cited_by_count":90},{"year":2018,"cited_by_count":129},{"year":2017,"cited_by_count":113},{"year":2016,"cited_by_count":153},{"year":2015,"cited_by_count":137},{"year":2014,"cited_by_count":120},{"year":2013,"cited_by_count":113},{"year":2012,"cited_by_count":46}],"updated_date":"2026-04-21T08:09:41.155169","created_date":"2025-10-10T00:00:00"}
