{"id":"https://openalex.org/W2113595151","doi":"https://doi.org/10.1093/bioinformatics/btq422","title":"Multiple gene expression profile alignment for microarray time-series data clustering","display_name":"Multiple gene expression profile alignment for microarray time-series data clustering","publication_year":2010,"publication_date":"2010-07-16","ids":{"openalex":"https://openalex.org/W2113595151","doi":"https://doi.org/10.1093/bioinformatics/btq422","mag":"2113595151","pmid":"https://pubmed.ncbi.nlm.nih.gov/20639411"},"language":"en","primary_location":{"id":"doi:10.1093/bioinformatics/btq422","is_oa":true,"landing_page_url":"https://doi.org/10.1093/bioinformatics/btq422","pdf_url":"https://academic.oup.com/bioinformatics/article-pdf/26/18/2281/48859280/bioinformatics_26_18_2281.pdf","source":{"id":"https://openalex.org/S52395412","display_name":"Bioinformatics","issn_l":"1367-4803","issn":["1367-4803","1367-4811"],"is_oa":false,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310311648","host_organization_name":"Oxford University Press","host_organization_lineage":["https://openalex.org/P4310311648","https://openalex.org/P4310311647"],"host_organization_lineage_names":["Oxford University Press","University of Oxford"],"type":"journal"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Bioinformatics","raw_type":"journal-article"},"type":"article","indexed_in":["crossref","doaj","pubmed"],"open_access":{"is_oa":true,"oa_status":"bronze","oa_url":"https://academic.oup.com/bioinformatics/article-pdf/26/18/2281/48859280/bioinformatics_26_18_2281.pdf","any_repository_has_fulltext":false},"authorships":[{"author_position":"first","author":{"id":"https://openalex.org/A5060761585","display_name":"Numanul Subhani","orcid":null},"institutions":[{"id":"https://openalex.org/I118347636","display_name":"Australian National University","ror":"https://ror.org/019wvm592","country_code":"AU","type":"education","lineage":["https://openalex.org/I118347636"]},{"id":"https://openalex.org/I74413500","display_name":"University of Windsor","ror":"https://ror.org/01gw3d370","country_code":"CA","type":"education","lineage":["https://openalex.org/I74413500"]}],"countries":["AU","CA"],"is_corresponding":true,"raw_author_name":"Numanul Subhani","raw_affiliation_strings":["1 School of Computer Science, 5115 Lambton Tower, University of Windsor, 401 Sunset Avenue, Windsor, Ontario N9B 3P4, Canada and 2Mathematical Sciences Institute, The Australian National University, Canberra ACT 0200, Australia"],"affiliations":[{"raw_affiliation_string":"1 School of Computer Science, 5115 Lambton Tower, University of Windsor, 401 Sunset Avenue, Windsor, Ontario N9B 3P4, Canada and 2Mathematical Sciences Institute, The Australian National University, Canberra ACT 0200, Australia","institution_ids":["https://openalex.org/I74413500","https://openalex.org/I118347636"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5040978295","display_name":"Luis Rueda","orcid":"https://orcid.org/0000-0001-7988-2058"},"institutions":[{"id":"https://openalex.org/I74413500","display_name":"University of Windsor","ror":"https://ror.org/01gw3d370","country_code":"CA","type":"education","lineage":["https://openalex.org/I74413500"]},{"id":"https://openalex.org/I118347636","display_name":"Australian National University","ror":"https://ror.org/019wvm592","country_code":"AU","type":"education","lineage":["https://openalex.org/I118347636"]}],"countries":["AU","CA"],"is_corresponding":false,"raw_author_name":"Luis Rueda","raw_affiliation_strings":["1 School of Computer Science, 5115 Lambton Tower, University of Windsor, 401 Sunset Avenue, Windsor, Ontario N9B 3P4, Canada and 2Mathematical Sciences Institute, The Australian National University, Canberra ACT 0200, Australia"],"affiliations":[{"raw_affiliation_string":"1 School of Computer Science, 5115 Lambton Tower, University of Windsor, 401 Sunset Avenue, Windsor, Ontario N9B 3P4, Canada and 2Mathematical Sciences Institute, The Australian National University, Canberra ACT 0200, Australia","institution_ids":["https://openalex.org/I74413500","https://openalex.org/I118347636"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5070302649","display_name":"Alioune Ngom","orcid":"https://orcid.org/0000-0003-2092-2494"},"institutions":[{"id":"https://openalex.org/I74413500","display_name":"University of Windsor","ror":"https://ror.org/01gw3d370","country_code":"CA","type":"education","lineage":["https://openalex.org/I74413500"]},{"id":"https://openalex.org/I118347636","display_name":"Australian National University","ror":"https://ror.org/019wvm592","country_code":"AU","type":"education","lineage":["https://openalex.org/I118347636"]}],"countries":["AU","CA"],"is_corresponding":false,"raw_author_name":"Alioune Ngom","raw_affiliation_strings":["1 School of Computer Science, 5115 Lambton Tower, University of Windsor, 401 Sunset Avenue, Windsor, Ontario N9B 3P4, Canada and 2Mathematical Sciences Institute, The Australian National University, Canberra ACT 0200, Australia"],"affiliations":[{"raw_affiliation_string":"1 School of Computer Science, 5115 Lambton Tower, University of Windsor, 401 Sunset Avenue, Windsor, Ontario N9B 3P4, Canada and 2Mathematical Sciences Institute, The Australian National University, Canberra ACT 0200, Australia","institution_ids":["https://openalex.org/I74413500","https://openalex.org/I118347636"]}]},{"author_position":"last","author":{"id":"https://openalex.org/A5014424673","display_name":"Conrad J. Burden","orcid":"https://orcid.org/0000-0003-0015-319X"},"institutions":[{"id":"https://openalex.org/I74413500","display_name":"University of Windsor","ror":"https://ror.org/01gw3d370","country_code":"CA","type":"education","lineage":["https://openalex.org/I74413500"]},{"id":"https://openalex.org/I118347636","display_name":"Australian National University","ror":"https://ror.org/019wvm592","country_code":"AU","type":"education","lineage":["https://openalex.org/I118347636"]}],"countries":["AU","CA"],"is_corresponding":false,"raw_author_name":"Conrad J. Burden","raw_affiliation_strings":["1 School of Computer Science, 5115 Lambton Tower, University of Windsor, 401 Sunset Avenue, Windsor, Ontario N9B 3P4, Canada and 2Mathematical Sciences Institute, The Australian National University, Canberra ACT 0200, Australia"],"affiliations":[{"raw_affiliation_string":"1 School of Computer Science, 5115 Lambton Tower, University of Windsor, 401 Sunset Avenue, Windsor, Ontario N9B 3P4, Canada and 2Mathematical Sciences Institute, The Australian National University, Canberra ACT 0200, Australia","institution_ids":["https://openalex.org/I74413500","https://openalex.org/I118347636"]}]}],"institutions":[],"countries_distinct_count":2,"institutions_distinct_count":4,"corresponding_author_ids":["https://openalex.org/A5060761585"],"corresponding_institution_ids":["https://openalex.org/I118347636","https://openalex.org/I74413500"],"apc_list":{"value":3618,"currency":"USD","value_usd":3618},"apc_paid":null,"fwci":0.135,"has_fulltext":false,"cited_by_count":20,"citation_normalized_percentile":{"value":0.54700487,"is_in_top_1_percent":false,"is_in_top_10_percent":false},"cited_by_percentile_year":{"min":89,"max":97},"biblio":{"volume":"26","issue":"18","first_page":"2281","last_page":"2288"},"is_retracted":false,"is_paratext":false,"is_xpac":false,"primary_topic":{"id":"https://openalex.org/T10885","display_name":"Gene expression and cancer classification","score":0.9987999796867371,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},"topics":[{"id":"https://openalex.org/T10885","display_name":"Gene expression and cancer classification","score":0.9987999796867371,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},{"id":"https://openalex.org/T11975","display_name":"Evolutionary Algorithms and Applications","score":0.9876000285148621,"subfield":{"id":"https://openalex.org/subfields/1702","display_name":"Artificial Intelligence"},"field":{"id":"https://openalex.org/fields/17","display_name":"Computer Science"},"domain":{"id":"https://openalex.org/domains/3","display_name":"Physical Sciences"}},{"id":"https://openalex.org/T10887","display_name":"Bioinformatics and Genomic Networks","score":0.9850000143051147,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}}],"keywords":[{"id":"https://openalex.org/keywords/cluster-analysis","display_name":"Cluster analysis","score":0.8632051348686218},{"id":"https://openalex.org/keywords/pairwise-comparison","display_name":"Pairwise comparison","score":0.763089656829834},{"id":"https://openalex.org/keywords/data-mining","display_name":"Data mining","score":0.6465863585472107},{"id":"https://openalex.org/keywords/computer-science","display_name":"Computer science","score":0.6241637468338013},{"id":"https://openalex.org/keywords/similarity","display_name":"Similarity (geometry)","score":0.6000244617462158},{"id":"https://openalex.org/keywords/series","display_name":"Series (stratigraphy)","score":0.5789561867713928},{"id":"https://openalex.org/keywords/expression","display_name":"Expression (computer science)","score":0.5397475957870483},{"id":"https://openalex.org/keywords/time-series","display_name":"Time series","score":0.4791659414768219},{"id":"https://openalex.org/keywords/data-set","display_name":"Data set","score":0.4614355266094208},{"id":"https://openalex.org/keywords/dimension","display_name":"Dimension (graph theory)","score":0.45604968070983887},{"id":"https://openalex.org/keywords/data-point","display_name":"Data point","score":0.43455174565315247},{"id":"https://openalex.org/keywords/similarity-measure","display_name":"Similarity measure","score":0.4179394841194153},{"id":"https://openalex.org/keywords/pattern-recognition","display_name":"Pattern recognition (psychology)","score":0.38430655002593994},{"id":"https://openalex.org/keywords/artificial-intelligence","display_name":"Artificial intelligence","score":0.3329245448112488},{"id":"https://openalex.org/keywords/mathematics","display_name":"Mathematics","score":0.25365257263183594},{"id":"https://openalex.org/keywords/machine-learning","display_name":"Machine learning","score":0.17614230513572693},{"id":"https://openalex.org/keywords/biology","display_name":"Biology","score":0.07457852363586426}],"concepts":[{"id":"https://openalex.org/C73555534","wikidata":"https://www.wikidata.org/wiki/Q622825","display_name":"Cluster analysis","level":2,"score":0.8632051348686218},{"id":"https://openalex.org/C184898388","wikidata":"https://www.wikidata.org/wiki/Q1435712","display_name":"Pairwise comparison","level":2,"score":0.763089656829834},{"id":"https://openalex.org/C124101348","wikidata":"https://www.wikidata.org/wiki/Q172491","display_name":"Data mining","level":1,"score":0.6465863585472107},{"id":"https://openalex.org/C41008148","wikidata":"https://www.wikidata.org/wiki/Q21198","display_name":"Computer science","level":0,"score":0.6241637468338013},{"id":"https://openalex.org/C103278499","wikidata":"https://www.wikidata.org/wiki/Q254465","display_name":"Similarity (geometry)","level":3,"score":0.6000244617462158},{"id":"https://openalex.org/C143724316","wikidata":"https://www.wikidata.org/wiki/Q312468","display_name":"Series (stratigraphy)","level":2,"score":0.5789561867713928},{"id":"https://openalex.org/C90559484","wikidata":"https://www.wikidata.org/wiki/Q778379","display_name":"Expression (computer science)","level":2,"score":0.5397475957870483},{"id":"https://openalex.org/C151406439","wikidata":"https://www.wikidata.org/wiki/Q186588","display_name":"Time series","level":2,"score":0.4791659414768219},{"id":"https://openalex.org/C58489278","wikidata":"https://www.wikidata.org/wiki/Q1172284","display_name":"Data set","level":2,"score":0.4614355266094208},{"id":"https://openalex.org/C33676613","wikidata":"https://www.wikidata.org/wiki/Q13415176","display_name":"Dimension (graph theory)","level":2,"score":0.45604968070983887},{"id":"https://openalex.org/C21080849","wikidata":"https://www.wikidata.org/wiki/Q13611879","display_name":"Data point","level":2,"score":0.43455174565315247},{"id":"https://openalex.org/C2776517306","wikidata":"https://www.wikidata.org/wiki/Q29017317","display_name":"Similarity measure","level":2,"score":0.4179394841194153},{"id":"https://openalex.org/C153180895","wikidata":"https://www.wikidata.org/wiki/Q7148389","display_name":"Pattern recognition (psychology)","level":2,"score":0.38430655002593994},{"id":"https://openalex.org/C154945302","wikidata":"https://www.wikidata.org/wiki/Q11660","display_name":"Artificial intelligence","level":1,"score":0.3329245448112488},{"id":"https://openalex.org/C33923547","wikidata":"https://www.wikidata.org/wiki/Q395","display_name":"Mathematics","level":0,"score":0.25365257263183594},{"id":"https://openalex.org/C119857082","wikidata":"https://www.wikidata.org/wiki/Q2539","display_name":"Machine learning","level":1,"score":0.17614230513572693},{"id":"https://openalex.org/C86803240","wikidata":"https://www.wikidata.org/wiki/Q420","display_name":"Biology","level":0,"score":0.07457852363586426},{"id":"https://openalex.org/C202444582","wikidata":"https://www.wikidata.org/wiki/Q837863","display_name":"Pure mathematics","level":1,"score":0.0},{"id":"https://openalex.org/C151730666","wikidata":"https://www.wikidata.org/wiki/Q7205","display_name":"Paleontology","level":1,"score":0.0},{"id":"https://openalex.org/C199360897","wikidata":"https://www.wikidata.org/wiki/Q9143","display_name":"Programming language","level":1,"score":0.0},{"id":"https://openalex.org/C115961682","wikidata":"https://www.wikidata.org/wiki/Q860623","display_name":"Image (mathematics)","level":2,"score":0.0}],"mesh":[{"descriptor_ui":"D000465","descriptor_name":"Algorithms","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D000465","descriptor_name":"Algorithms","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D000465","descriptor_name":"Algorithms","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D015870","descriptor_name":"Gene Expression","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D015870","descriptor_name":"Gene Expression","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D015870","descriptor_name":"Gene Expression","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D016000","descriptor_name":"Cluster Analysis","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D016000","descriptor_name":"Cluster Analysis","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D016000","descriptor_name":"Cluster Analysis","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D020411","descriptor_name":"Oligonucleotide Array Sequence Analysis","qualifier_ui":"Q000379","qualifier_name":"methods","is_major_topic":false},{"descriptor_ui":"D020411","descriptor_name":"Oligonucleotide Array Sequence Analysis","qualifier_ui":"Q000379","qualifier_name":"methods","is_major_topic":false},{"descriptor_ui":"D020411","descriptor_name":"Oligonucleotide Array Sequence Analysis","qualifier_ui":"Q000379","qualifier_name":"methods","is_major_topic":false},{"descriptor_ui":"D020869","descriptor_name":"Gene Expression Profiling","qualifier_ui":"Q000379","qualifier_name":"methods","is_major_topic":false},{"descriptor_ui":"D020869","descriptor_name":"Gene Expression Profiling","qualifier_ui":"Q000379","qualifier_name":"methods","is_major_topic":false},{"descriptor_ui":"D020869","descriptor_name":"Gene Expression Profiling","qualifier_ui":"Q000379","qualifier_name":"methods","is_major_topic":false}],"locations_count":4,"locations":[{"id":"doi:10.1093/bioinformatics/btq422","is_oa":true,"landing_page_url":"https://doi.org/10.1093/bioinformatics/btq422","pdf_url":"https://academic.oup.com/bioinformatics/article-pdf/26/18/2281/48859280/bioinformatics_26_18_2281.pdf","source":{"id":"https://openalex.org/S52395412","display_name":"Bioinformatics","issn_l":"1367-4803","issn":["1367-4803","1367-4811"],"is_oa":false,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310311648","host_organization_name":"Oxford University Press","host_organization_lineage":["https://openalex.org/P4310311648","https://openalex.org/P4310311647"],"host_organization_lineage_names":["Oxford University Press","University of Oxford"],"type":"journal"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Bioinformatics","raw_type":"journal-article"},{"id":"pmid:20639411","is_oa":false,"landing_page_url":"https://pubmed.ncbi.nlm.nih.gov/20639411","pdf_url":null,"source":{"id":"https://openalex.org/S4306525036","display_name":"PubMed","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I1299303238","host_organization_name":"National Institutes of Health","host_organization_lineage":["https://openalex.org/I1299303238"],"host_organization_lineage_names":[],"type":"repository"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Bioinformatics (Oxford, England)","raw_type":null},{"id":"pmh:oai:openresearch-repository.anu.edu.au:1885/52573","is_oa":false,"landing_page_url":"http://hdl.handle.net/1885/52573","pdf_url":null,"source":{"id":"https://openalex.org/S4306402539","display_name":"ANU Open Research (Australian National University)","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I118347636","host_organization_name":"Australian National University","host_organization_lineage":["https://openalex.org/I118347636"],"host_organization_lineage_names":[],"type":"repository"},"license":null,"license_id":null,"version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":"Bioinformatics","raw_type":"Journal article"},{"id":"pmh:oai:openresearch-repository.anu.edu.au:1885/733800308","is_oa":false,"landing_page_url":"https://hdl.handle.net/1885/733800308","pdf_url":null,"source":{"id":"https://openalex.org/S4306402539","display_name":"ANU Open Research (Australian National University)","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I118347636","host_organization_name":"Australian National University","host_organization_lineage":["https://openalex.org/I118347636"],"host_organization_lineage_names":[],"type":"repository"},"license":null,"license_id":null,"version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":"Bioinformatics","raw_type":"Conference paper"}],"best_oa_location":{"id":"doi:10.1093/bioinformatics/btq422","is_oa":true,"landing_page_url":"https://doi.org/10.1093/bioinformatics/btq422","pdf_url":"https://academic.oup.com/bioinformatics/article-pdf/26/18/2281/48859280/bioinformatics_26_18_2281.pdf","source":{"id":"https://openalex.org/S52395412","display_name":"Bioinformatics","issn_l":"1367-4803","issn":["1367-4803","1367-4811"],"is_oa":false,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310311648","host_organization_name":"Oxford University Press","host_organization_lineage":["https://openalex.org/P4310311648","https://openalex.org/P4310311647"],"host_organization_lineage_names":["Oxford University Press","University of Oxford"],"type":"journal"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Bioinformatics","raw_type":"journal-article"},"sustainable_development_goals":[],"awards":[],"funders":[],"has_content":{"pdf":true,"grobid_xml":true},"content_urls":{"pdf":"https://content.openalex.org/works/W2113595151.pdf","grobid_xml":"https://content.openalex.org/works/W2113595151.grobid-xml"},"referenced_works_count":24,"referenced_works":["https://openalex.org/W1503537619","https://openalex.org/W1531298303","https://openalex.org/W1532816937","https://openalex.org/W1579175606","https://openalex.org/W1969289662","https://openalex.org/W1969810123","https://openalex.org/W1976208596","https://openalex.org/W2029485495","https://openalex.org/W2049633694","https://openalex.org/W2096295012","https://openalex.org/W2135000328","https://openalex.org/W2135187880","https://openalex.org/W2135502751","https://openalex.org/W2135951244","https://openalex.org/W2142460132","https://openalex.org/W2148560070","https://openalex.org/W2148894497","https://openalex.org/W2163856173","https://openalex.org/W2167839606","https://openalex.org/W2222512263","https://openalex.org/W3129711340","https://openalex.org/W4239048948","https://openalex.org/W4292692470","https://openalex.org/W6631985740"],"related_works":["https://openalex.org/W1488437289","https://openalex.org/W2187249578","https://openalex.org/W2374956505","https://openalex.org/W2399400609","https://openalex.org/W2563298538","https://openalex.org/W1594610071","https://openalex.org/W126601891","https://openalex.org/W2358805260","https://openalex.org/W2511563733","https://openalex.org/W4306377369"],"abstract_inverted_index":{"We":[0,43],"introduce":[1,45],"pairwise":[2,28,58],"gene":[3],"expression":[4,53],"profile":[5,54],"alignment,":[6,55],"which":[7,56],"vertically":[8],"shifts":[9],"two":[10],"profiles":[11],"in":[12],"such":[13],"a":[14,33,46,61],"way":[15],"that":[16,37,50],"the":[17,27],"area":[18],"between":[19],"their":[20],"corresponding":[21],"curves":[22],"is":[23,38],"minimal.":[24],"Based":[25],"on":[26,67],"alignment":[29,59],"operation,":[30],"we":[31],"define":[32],"new":[34,47],"distance":[35],"function":[36],"appropriate":[39],"for":[40],"time-series":[41],"profiles.":[42,64],"also":[44],"clustering":[48],"method":[49],"involves":[51],"multiple":[52],"generalizes":[57],"to":[60],"set":[62],"of":[63,73],"Extensive":[65],"experiments":[66],"well-known":[68],"datasets":[69],"yield":[70],"encouraging":[71],"results":[72],"at":[74],"least":[75],"80%":[76],"classification":[77],"accuracy.":[78]},"counts_by_year":[{"year":2025,"cited_by_count":1},{"year":2024,"cited_by_count":2},{"year":2022,"cited_by_count":1},{"year":2021,"cited_by_count":4},{"year":2020,"cited_by_count":3},{"year":2019,"cited_by_count":1},{"year":2018,"cited_by_count":3},{"year":2017,"cited_by_count":1},{"year":2015,"cited_by_count":2},{"year":2014,"cited_by_count":1}],"updated_date":"2026-03-16T09:10:04.655348","created_date":"2025-10-10T00:00:00"}