{"id":"https://openalex.org/W2154525756","doi":"https://doi.org/10.1093/bioinformatics/btq409","title":"BioNetCAD: design, simulation and experimental validation of synthetic biochemical networks","display_name":"BioNetCAD: design, simulation and experimental validation of synthetic biochemical networks","publication_year":2010,"publication_date":"2010-07-13","ids":{"openalex":"https://openalex.org/W2154525756","doi":"https://doi.org/10.1093/bioinformatics/btq409","mag":"2154525756","pmid":"https://pubmed.ncbi.nlm.nih.gov/20628073"},"language":"en","primary_location":{"id":"doi:10.1093/bioinformatics/btq409","is_oa":true,"landing_page_url":"https://doi.org/10.1093/bioinformatics/btq409","pdf_url":"https://academic.oup.com/bioinformatics/article-pdf/26/18/2298/48855211/bioinformatics_26_18_2298.pdf","source":{"id":"https://openalex.org/S52395412","display_name":"Bioinformatics","issn_l":"1367-4803","issn":["1367-4803","1367-4811"],"is_oa":false,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310311648","host_organization_name":"Oxford University Press","host_organization_lineage":["https://openalex.org/P4310311648","https://openalex.org/P4310311647"],"host_organization_lineage_names":["Oxford University Press","University of Oxford"],"type":"journal"},"license":"cc-by-nc","license_id":"https://openalex.org/licenses/cc-by-nc","version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Bioinformatics","raw_type":"journal-article"},"type":"article","indexed_in":["crossref","doaj","pubmed"],"open_access":{"is_oa":true,"oa_status":"hybrid","oa_url":"https://academic.oup.com/bioinformatics/article-pdf/26/18/2298/48855211/bioinformatics_26_18_2298.pdf","any_repository_has_fulltext":true},"authorships":[{"author_position":"first","author":{"id":"https://openalex.org/A5064859160","display_name":"St\u00e9phanie Rialle","orcid":"https://orcid.org/0000-0001-7199-2519"},"institutions":[{"id":"https://openalex.org/I1294671590","display_name":"Centre National de la Recherche Scientifique","ror":"https://ror.org/02feahw73","country_code":"FR","type":"funder","lineage":["https://openalex.org/I1294671590"]},{"id":"https://openalex.org/I4210152316","display_name":"Mod\u00e9lisation et Ing\u00e9nierie des Syst\u00e8mes Complexes Biologiques pour le Diagnostic","ror":"https://ror.org/056mmjd70","country_code":"FR","type":"facility","lineage":["https://openalex.org/I1294671590","https://openalex.org/I1294671590","https://openalex.org/I4210096427","https://openalex.org/I4210152316","https://openalex.org/I4210166450"]},{"id":"https://openalex.org/I4210144804","display_name":"Laboratoire de Recherche en Informatique","ror":"https://ror.org/04e3ktk27","country_code":"FR","type":"facility","lineage":["https://openalex.org/I102197404","https://openalex.org/I1294671590","https://openalex.org/I1326498283","https://openalex.org/I4210144804","https://openalex.org/I4210159245"]},{"id":"https://openalex.org/I102197404","display_name":"Universit\u00e9 Paris-Sud","ror":"https://ror.org/028rypz17","country_code":"FR","type":"education","lineage":["https://openalex.org/I102197404"]}],"countries":["FR"],"is_corresponding":true,"raw_author_name":"St\u00e9phanie Rialle","raw_affiliation_strings":["1 SysDiag UMR 3145 CNRS/Bio-Rad, Mod\u00e9lisation et ing\u00e9nierie de syst\u00e8mes complexes biologiques pour le diagnostic, Cap Delta/Parc Eurom\u00e9decine, 1682 rue de la Valsi\u00e8re, CS 61003, 34184 Montpellier Cedex 4 and 2Laboratoire de Recherche en Informatique, CNRS, UMR 8623, Universit\u00e9 Paris-Sud 11, 91405 Orsay Cedex, France"],"affiliations":[{"raw_affiliation_string":"1 SysDiag UMR 3145 CNRS/Bio-Rad, Mod\u00e9lisation et ing\u00e9nierie de syst\u00e8mes complexes biologiques pour le diagnostic, Cap Delta/Parc Eurom\u00e9decine, 1682 rue de la Valsi\u00e8re, CS 61003, 34184 Montpellier Cedex 4 and 2Laboratoire de Recherche en Informatique, CNRS, UMR 8623, Universit\u00e9 Paris-Sud 11, 91405 Orsay Cedex, France","institution_ids":["https://openalex.org/I4210152316","https://openalex.org/I102197404","https://openalex.org/I4210144804","https://openalex.org/I1294671590"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5055089076","display_name":"Liza Felicori","orcid":"https://orcid.org/0000-0002-3240-9658"},"institutions":[{"id":"https://openalex.org/I1294671590","display_name":"Centre National de la Recherche Scientifique","ror":"https://ror.org/02feahw73","country_code":"FR","type":"funder","lineage":["https://openalex.org/I1294671590"]},{"id":"https://openalex.org/I102197404","display_name":"Universit\u00e9 Paris-Sud","ror":"https://ror.org/028rypz17","country_code":"FR","type":"education","lineage":["https://openalex.org/I102197404"]},{"id":"https://openalex.org/I4210144804","display_name":"Laboratoire de Recherche en Informatique","ror":"https://ror.org/04e3ktk27","country_code":"FR","type":"facility","lineage":["https://openalex.org/I102197404","https://openalex.org/I1294671590","https://openalex.org/I1326498283","https://openalex.org/I4210144804","https://openalex.org/I4210159245"]},{"id":"https://openalex.org/I4210152316","display_name":"Mod\u00e9lisation et Ing\u00e9nierie des Syst\u00e8mes Complexes Biologiques pour le Diagnostic","ror":"https://ror.org/056mmjd70","country_code":"FR","type":"facility","lineage":["https://openalex.org/I1294671590","https://openalex.org/I1294671590","https://openalex.org/I4210096427","https://openalex.org/I4210152316","https://openalex.org/I4210166450"]}],"countries":["FR"],"is_corresponding":false,"raw_author_name":"Liza Felicori","raw_affiliation_strings":["1 SysDiag UMR 3145 CNRS/Bio-Rad, Mod\u00e9lisation et ing\u00e9nierie de syst\u00e8mes complexes biologiques pour le diagnostic, Cap Delta/Parc Eurom\u00e9decine, 1682 rue de la Valsi\u00e8re, CS 61003, 34184 Montpellier Cedex 4 and 2Laboratoire de Recherche en Informatique, CNRS, UMR 8623, Universit\u00e9 Paris-Sud 11, 91405 Orsay Cedex, France"],"affiliations":[{"raw_affiliation_string":"1 SysDiag UMR 3145 CNRS/Bio-Rad, Mod\u00e9lisation et ing\u00e9nierie de syst\u00e8mes complexes biologiques pour le diagnostic, Cap Delta/Parc Eurom\u00e9decine, 1682 rue de la Valsi\u00e8re, CS 61003, 34184 Montpellier Cedex 4 and 2Laboratoire de Recherche en Informatique, CNRS, UMR 8623, Universit\u00e9 Paris-Sud 11, 91405 Orsay Cedex, France","institution_ids":["https://openalex.org/I4210152316","https://openalex.org/I102197404","https://openalex.org/I4210144804","https://openalex.org/I1294671590"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5050207038","display_name":"Camila Dias-Lopes","orcid":null},"institutions":[{"id":"https://openalex.org/I4210144804","display_name":"Laboratoire de Recherche en Informatique","ror":"https://ror.org/04e3ktk27","country_code":"FR","type":"facility","lineage":["https://openalex.org/I102197404","https://openalex.org/I1294671590","https://openalex.org/I1326498283","https://openalex.org/I4210144804","https://openalex.org/I4210159245"]},{"id":"https://openalex.org/I1294671590","display_name":"Centre National de la Recherche Scientifique","ror":"https://ror.org/02feahw73","country_code":"FR","type":"funder","lineage":["https://openalex.org/I1294671590"]},{"id":"https://openalex.org/I4210152316","display_name":"Mod\u00e9lisation et Ing\u00e9nierie des Syst\u00e8mes Complexes Biologiques pour le Diagnostic","ror":"https://ror.org/056mmjd70","country_code":"FR","type":"facility","lineage":["https://openalex.org/I1294671590","https://openalex.org/I1294671590","https://openalex.org/I4210096427","https://openalex.org/I4210152316","https://openalex.org/I4210166450"]},{"id":"https://openalex.org/I102197404","display_name":"Universit\u00e9 Paris-Sud","ror":"https://ror.org/028rypz17","country_code":"FR","type":"education","lineage":["https://openalex.org/I102197404"]}],"countries":["FR"],"is_corresponding":false,"raw_author_name":"Camila Dias-Lopes","raw_affiliation_strings":["1 SysDiag UMR 3145 CNRS/Bio-Rad, Mod\u00e9lisation et ing\u00e9nierie de syst\u00e8mes complexes biologiques pour le diagnostic, Cap Delta/Parc Eurom\u00e9decine, 1682 rue de la Valsi\u00e8re, CS 61003, 34184 Montpellier Cedex 4 and 2Laboratoire de Recherche en Informatique, CNRS, UMR 8623, Universit\u00e9 Paris-Sud 11, 91405 Orsay Cedex, France"],"affiliations":[{"raw_affiliation_string":"1 SysDiag UMR 3145 CNRS/Bio-Rad, Mod\u00e9lisation et ing\u00e9nierie de syst\u00e8mes complexes biologiques pour le diagnostic, Cap Delta/Parc Eurom\u00e9decine, 1682 rue de la Valsi\u00e8re, CS 61003, 34184 Montpellier Cedex 4 and 2Laboratoire de Recherche en Informatique, CNRS, UMR 8623, Universit\u00e9 Paris-Sud 11, 91405 Orsay Cedex, France","institution_ids":["https://openalex.org/I4210152316","https://openalex.org/I102197404","https://openalex.org/I4210144804","https://openalex.org/I1294671590"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5059417503","display_name":"Sabine P\u00e9r\u00e8s","orcid":"https://orcid.org/0000-0002-4467-9989"},"institutions":[{"id":"https://openalex.org/I4210144804","display_name":"Laboratoire de Recherche en Informatique","ror":"https://ror.org/04e3ktk27","country_code":"FR","type":"facility","lineage":["https://openalex.org/I102197404","https://openalex.org/I1294671590","https://openalex.org/I1326498283","https://openalex.org/I4210144804","https://openalex.org/I4210159245"]},{"id":"https://openalex.org/I4210152316","display_name":"Mod\u00e9lisation et Ing\u00e9nierie des Syst\u00e8mes Complexes Biologiques pour le Diagnostic","ror":"https://ror.org/056mmjd70","country_code":"FR","type":"facility","lineage":["https://openalex.org/I1294671590","https://openalex.org/I1294671590","https://openalex.org/I4210096427","https://openalex.org/I4210152316","https://openalex.org/I4210166450"]},{"id":"https://openalex.org/I1294671590","display_name":"Centre National de la Recherche Scientifique","ror":"https://ror.org/02feahw73","country_code":"FR","type":"funder","lineage":["https://openalex.org/I1294671590"]},{"id":"https://openalex.org/I102197404","display_name":"Universit\u00e9 Paris-Sud","ror":"https://ror.org/028rypz17","country_code":"FR","type":"education","lineage":["https://openalex.org/I102197404"]}],"countries":["FR"],"is_corresponding":false,"raw_author_name":"Sabine P\u00e9r\u00e8s","raw_affiliation_strings":["1 SysDiag UMR 3145 CNRS/Bio-Rad, Mod\u00e9lisation et ing\u00e9nierie de syst\u00e8mes complexes biologiques pour le diagnostic, Cap Delta/Parc Eurom\u00e9decine, 1682 rue de la Valsi\u00e8re, CS 61003, 34184 Montpellier Cedex 4 and 2Laboratoire de Recherche en Informatique, CNRS, UMR 8623, Universit\u00e9 Paris-Sud 11, 91405 Orsay Cedex, France"],"affiliations":[{"raw_affiliation_string":"1 SysDiag UMR 3145 CNRS/Bio-Rad, Mod\u00e9lisation et ing\u00e9nierie de syst\u00e8mes complexes biologiques pour le diagnostic, Cap Delta/Parc Eurom\u00e9decine, 1682 rue de la Valsi\u00e8re, CS 61003, 34184 Montpellier Cedex 4 and 2Laboratoire de Recherche en Informatique, CNRS, UMR 8623, Universit\u00e9 Paris-Sud 11, 91405 Orsay Cedex, France","institution_ids":["https://openalex.org/I4210152316","https://openalex.org/I102197404","https://openalex.org/I4210144804","https://openalex.org/I1294671590"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5001918265","display_name":"Sana\u00e2 El Atia","orcid":null},"institutions":[{"id":"https://openalex.org/I4210152316","display_name":"Mod\u00e9lisation et Ing\u00e9nierie des Syst\u00e8mes Complexes Biologiques pour le Diagnostic","ror":"https://ror.org/056mmjd70","country_code":"FR","type":"facility","lineage":["https://openalex.org/I1294671590","https://openalex.org/I1294671590","https://openalex.org/I4210096427","https://openalex.org/I4210152316","https://openalex.org/I4210166450"]},{"id":"https://openalex.org/I102197404","display_name":"Universit\u00e9 Paris-Sud","ror":"https://ror.org/028rypz17","country_code":"FR","type":"education","lineage":["https://openalex.org/I102197404"]},{"id":"https://openalex.org/I4210144804","display_name":"Laboratoire de Recherche en Informatique","ror":"https://ror.org/04e3ktk27","country_code":"FR","type":"facility","lineage":["https://openalex.org/I102197404","https://openalex.org/I1294671590","https://openalex.org/I1326498283","https://openalex.org/I4210144804","https://openalex.org/I4210159245"]},{"id":"https://openalex.org/I1294671590","display_name":"Centre National de la Recherche Scientifique","ror":"https://ror.org/02feahw73","country_code":"FR","type":"funder","lineage":["https://openalex.org/I1294671590"]}],"countries":["FR"],"is_corresponding":false,"raw_author_name":"Sana\u00e2 El Atia","raw_affiliation_strings":["1 SysDiag UMR 3145 CNRS/Bio-Rad, Mod\u00e9lisation et ing\u00e9nierie de syst\u00e8mes complexes biologiques pour le diagnostic, Cap Delta/Parc Eurom\u00e9decine, 1682 rue de la Valsi\u00e8re, CS 61003, 34184 Montpellier Cedex 4 and 2Laboratoire de Recherche en Informatique, CNRS, UMR 8623, Universit\u00e9 Paris-Sud 11, 91405 Orsay Cedex, France"],"affiliations":[{"raw_affiliation_string":"1 SysDiag UMR 3145 CNRS/Bio-Rad, Mod\u00e9lisation et ing\u00e9nierie de syst\u00e8mes complexes biologiques pour le diagnostic, Cap Delta/Parc Eurom\u00e9decine, 1682 rue de la Valsi\u00e8re, CS 61003, 34184 Montpellier Cedex 4 and 2Laboratoire de Recherche en Informatique, CNRS, UMR 8623, Universit\u00e9 Paris-Sud 11, 91405 Orsay Cedex, France","institution_ids":["https://openalex.org/I4210152316","https://openalex.org/I102197404","https://openalex.org/I4210144804","https://openalex.org/I1294671590"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5088629839","display_name":"Alain R. Thierry","orcid":"https://orcid.org/0000-0002-4632-5404"},"institutions":[{"id":"https://openalex.org/I1294671590","display_name":"Centre National de la Recherche Scientifique","ror":"https://ror.org/02feahw73","country_code":"FR","type":"funder","lineage":["https://openalex.org/I1294671590"]},{"id":"https://openalex.org/I4210152316","display_name":"Mod\u00e9lisation et Ing\u00e9nierie des Syst\u00e8mes Complexes Biologiques pour le Diagnostic","ror":"https://ror.org/056mmjd70","country_code":"FR","type":"facility","lineage":["https://openalex.org/I1294671590","https://openalex.org/I1294671590","https://openalex.org/I4210096427","https://openalex.org/I4210152316","https://openalex.org/I4210166450"]},{"id":"https://openalex.org/I102197404","display_name":"Universit\u00e9 Paris-Sud","ror":"https://ror.org/028rypz17","country_code":"FR","type":"education","lineage":["https://openalex.org/I102197404"]},{"id":"https://openalex.org/I4210144804","display_name":"Laboratoire de Recherche en Informatique","ror":"https://ror.org/04e3ktk27","country_code":"FR","type":"facility","lineage":["https://openalex.org/I102197404","https://openalex.org/I1294671590","https://openalex.org/I1326498283","https://openalex.org/I4210144804","https://openalex.org/I4210159245"]}],"countries":["FR"],"is_corresponding":false,"raw_author_name":"Alain R. Thierry","raw_affiliation_strings":["1 SysDiag UMR 3145 CNRS/Bio-Rad, Mod\u00e9lisation et ing\u00e9nierie de syst\u00e8mes complexes biologiques pour le diagnostic, Cap Delta/Parc Eurom\u00e9decine, 1682 rue de la Valsi\u00e8re, CS 61003, 34184 Montpellier Cedex 4 and 2Laboratoire de Recherche en Informatique, CNRS, UMR 8623, Universit\u00e9 Paris-Sud 11, 91405 Orsay Cedex, France"],"affiliations":[{"raw_affiliation_string":"1 SysDiag UMR 3145 CNRS/Bio-Rad, Mod\u00e9lisation et ing\u00e9nierie de syst\u00e8mes complexes biologiques pour le diagnostic, Cap Delta/Parc Eurom\u00e9decine, 1682 rue de la Valsi\u00e8re, CS 61003, 34184 Montpellier Cedex 4 and 2Laboratoire de Recherche en Informatique, CNRS, UMR 8623, Universit\u00e9 Paris-Sud 11, 91405 Orsay Cedex, France","institution_ids":["https://openalex.org/I4210152316","https://openalex.org/I102197404","https://openalex.org/I4210144804","https://openalex.org/I1294671590"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5059938457","display_name":"Patrick Amar","orcid":"https://orcid.org/0000-0003-0584-0546"},"institutions":[{"id":"https://openalex.org/I4210152316","display_name":"Mod\u00e9lisation et Ing\u00e9nierie des Syst\u00e8mes Complexes Biologiques pour le Diagnostic","ror":"https://ror.org/056mmjd70","country_code":"FR","type":"facility","lineage":["https://openalex.org/I1294671590","https://openalex.org/I1294671590","https://openalex.org/I4210096427","https://openalex.org/I4210152316","https://openalex.org/I4210166450"]},{"id":"https://openalex.org/I102197404","display_name":"Universit\u00e9 Paris-Sud","ror":"https://ror.org/028rypz17","country_code":"FR","type":"education","lineage":["https://openalex.org/I102197404"]},{"id":"https://openalex.org/I4210144804","display_name":"Laboratoire de Recherche en Informatique","ror":"https://ror.org/04e3ktk27","country_code":"FR","type":"facility","lineage":["https://openalex.org/I102197404","https://openalex.org/I1294671590","https://openalex.org/I1326498283","https://openalex.org/I4210144804","https://openalex.org/I4210159245"]},{"id":"https://openalex.org/I1294671590","display_name":"Centre National de la Recherche Scientifique","ror":"https://ror.org/02feahw73","country_code":"FR","type":"funder","lineage":["https://openalex.org/I1294671590"]}],"countries":["FR"],"is_corresponding":false,"raw_author_name":"Patrick Amar","raw_affiliation_strings":["1 SysDiag UMR 3145 CNRS/Bio-Rad, Mod\u00e9lisation et ing\u00e9nierie de syst\u00e8mes complexes biologiques pour le diagnostic, Cap Delta/Parc Eurom\u00e9decine, 1682 rue de la Valsi\u00e8re, CS 61003, 34184 Montpellier Cedex 4 and 2Laboratoire de Recherche en Informatique, CNRS, UMR 8623, Universit\u00e9 Paris-Sud 11, 91405 Orsay Cedex, France"],"affiliations":[{"raw_affiliation_string":"1 SysDiag UMR 3145 CNRS/Bio-Rad, Mod\u00e9lisation et ing\u00e9nierie de syst\u00e8mes complexes biologiques pour le diagnostic, Cap Delta/Parc Eurom\u00e9decine, 1682 rue de la Valsi\u00e8re, CS 61003, 34184 Montpellier Cedex 4 and 2Laboratoire de Recherche en Informatique, CNRS, UMR 8623, Universit\u00e9 Paris-Sud 11, 91405 Orsay Cedex, France","institution_ids":["https://openalex.org/I4210152316","https://openalex.org/I102197404","https://openalex.org/I4210144804","https://openalex.org/I1294671590"]}]},{"author_position":"last","author":{"id":"https://openalex.org/A5070559991","display_name":"Franck Molina","orcid":"https://orcid.org/0000-0003-4181-0854"},"institutions":[{"id":"https://openalex.org/I4210152316","display_name":"Mod\u00e9lisation et Ing\u00e9nierie des Syst\u00e8mes Complexes Biologiques pour le Diagnostic","ror":"https://ror.org/056mmjd70","country_code":"FR","type":"facility","lineage":["https://openalex.org/I1294671590","https://openalex.org/I1294671590","https://openalex.org/I4210096427","https://openalex.org/I4210152316","https://openalex.org/I4210166450"]},{"id":"https://openalex.org/I1294671590","display_name":"Centre National de la Recherche Scientifique","ror":"https://ror.org/02feahw73","country_code":"FR","type":"funder","lineage":["https://openalex.org/I1294671590"]},{"id":"https://openalex.org/I102197404","display_name":"Universit\u00e9 Paris-Sud","ror":"https://ror.org/028rypz17","country_code":"FR","type":"education","lineage":["https://openalex.org/I102197404"]},{"id":"https://openalex.org/I4210144804","display_name":"Laboratoire de Recherche en Informatique","ror":"https://ror.org/04e3ktk27","country_code":"FR","type":"facility","lineage":["https://openalex.org/I102197404","https://openalex.org/I1294671590","https://openalex.org/I1326498283","https://openalex.org/I4210144804","https://openalex.org/I4210159245"]}],"countries":["FR"],"is_corresponding":false,"raw_author_name":"Franck Molina","raw_affiliation_strings":["1 SysDiag UMR 3145 CNRS/Bio-Rad, Mod\u00e9lisation et ing\u00e9nierie de syst\u00e8mes complexes biologiques pour le diagnostic, Cap Delta/Parc Eurom\u00e9decine, 1682 rue de la Valsi\u00e8re, CS 61003, 34184 Montpellier Cedex 4 and 2Laboratoire de Recherche en Informatique, CNRS, UMR 8623, Universit\u00e9 Paris-Sud 11, 91405 Orsay Cedex, France"],"affiliations":[{"raw_affiliation_string":"1 SysDiag UMR 3145 CNRS/Bio-Rad, Mod\u00e9lisation et ing\u00e9nierie de syst\u00e8mes complexes biologiques pour le diagnostic, Cap Delta/Parc Eurom\u00e9decine, 1682 rue de la Valsi\u00e8re, CS 61003, 34184 Montpellier Cedex 4 and 2Laboratoire de Recherche en Informatique, CNRS, UMR 8623, Universit\u00e9 Paris-Sud 11, 91405 Orsay Cedex, France","institution_ids":["https://openalex.org/I4210152316","https://openalex.org/I102197404","https://openalex.org/I4210144804","https://openalex.org/I1294671590"]}]}],"institutions":[],"countries_distinct_count":1,"institutions_distinct_count":8,"corresponding_author_ids":["https://openalex.org/A5064859160"],"corresponding_institution_ids":["https://openalex.org/I102197404","https://openalex.org/I1294671590","https://openalex.org/I4210144804","https://openalex.org/I4210152316"],"apc_list":{"value":3618,"currency":"USD","value_usd":3618},"apc_paid":{"value":3618,"currency":"USD","value_usd":3618},"fwci":1.3554,"has_fulltext":true,"cited_by_count":18,"citation_normalized_percentile":{"value":0.80288879,"is_in_top_1_percent":false,"is_in_top_10_percent":false},"cited_by_percentile_year":{"min":89,"max":98},"biblio":{"volume":"26","issue":"18","first_page":"2298","last_page":"2304"},"is_retracted":false,"is_paratext":false,"is_xpac":false,"primary_topic":{"id":"https://openalex.org/T10621","display_name":"Gene Regulatory Network Analysis","score":0.9998999834060669,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},"topics":[{"id":"https://openalex.org/T10621","display_name":"Gene Regulatory Network Analysis","score":0.9998999834060669,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},{"id":"https://openalex.org/T10932","display_name":"Microbial Metabolic Engineering and Bioproduction","score":0.9962999820709229,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},{"id":"https://openalex.org/T10887","display_name":"Bioinformatics and Genomic Networks","score":0.9868999719619751,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}}],"keywords":[{"id":"https://openalex.org/keywords/computer-science","display_name":"Computer science","score":0.7810142040252686},{"id":"https://openalex.org/keywords/synthetic-biology","display_name":"Synthetic biology","score":0.6743106842041016},{"id":"https://openalex.org/keywords/sbml","display_name":"SBML","score":0.6413196921348572},{"id":"https://openalex.org/keywords/ode","display_name":"Ode","score":0.6360021233558655},{"id":"https://openalex.org/keywords/construct","display_name":"Construct (python library)","score":0.6332826614379883},{"id":"https://openalex.org/keywords/java","display_name":"Java","score":0.6031219363212585},{"id":"https://openalex.org/keywords/software","display_name":"Software","score":0.5466330051422119},{"id":"https://openalex.org/keywords/ordinary-differential-equation","display_name":"Ordinary differential equation","score":0.522974967956543},{"id":"https://openalex.org/keywords/biological-network","display_name":"Biological network","score":0.46900439262390137},{"id":"https://openalex.org/keywords/experimental-data","display_name":"Experimental data","score":0.4474843442440033},{"id":"https://openalex.org/keywords/reverse-engineering","display_name":"Reverse engineering","score":0.4347204864025116},{"id":"https://openalex.org/keywords/model-validation","display_name":"Model validation","score":0.42027774453163147},{"id":"https://openalex.org/keywords/programming-language","display_name":"Programming language","score":0.3658411502838135},{"id":"https://openalex.org/keywords/data-mining","display_name":"Data mining","score":0.356644868850708},{"id":"https://openalex.org/keywords/software-engineering","display_name":"Software engineering","score":0.35397037863731384},{"id":"https://openalex.org/keywords/bioinformatics","display_name":"Bioinformatics","score":0.1948239803314209},{"id":"https://openalex.org/keywords/operating-system","display_name":"Operating system","score":0.17200550436973572},{"id":"https://openalex.org/keywords/differential-equation","display_name":"Differential equation","score":0.15307071805000305},{"id":"https://openalex.org/keywords/data-science","display_name":"Data science","score":0.12084203958511353},{"id":"https://openalex.org/keywords/biology","display_name":"Biology","score":0.09197282791137695},{"id":"https://openalex.org/keywords/mathematics","display_name":"Mathematics","score":0.07864919304847717}],"concepts":[{"id":"https://openalex.org/C41008148","wikidata":"https://www.wikidata.org/wiki/Q21198","display_name":"Computer science","level":0,"score":0.7810142040252686},{"id":"https://openalex.org/C191908910","wikidata":"https://www.wikidata.org/wiki/Q862838","display_name":"Synthetic biology","level":2,"score":0.6743106842041016},{"id":"https://openalex.org/C87186988","wikidata":"https://www.wikidata.org/wiki/Q452197","display_name":"SBML","level":4,"score":0.6413196921348572},{"id":"https://openalex.org/C34862557","wikidata":"https://www.wikidata.org/wiki/Q178985","display_name":"Ode","level":2,"score":0.6360021233558655},{"id":"https://openalex.org/C2780801425","wikidata":"https://www.wikidata.org/wiki/Q5164392","display_name":"Construct (python library)","level":2,"score":0.6332826614379883},{"id":"https://openalex.org/C548217200","wikidata":"https://www.wikidata.org/wiki/Q251","display_name":"Java","level":2,"score":0.6031219363212585},{"id":"https://openalex.org/C2777904410","wikidata":"https://www.wikidata.org/wiki/Q7397","display_name":"Software","level":2,"score":0.5466330051422119},{"id":"https://openalex.org/C51544822","wikidata":"https://www.wikidata.org/wiki/Q465274","display_name":"Ordinary differential equation","level":3,"score":0.522974967956543},{"id":"https://openalex.org/C28225019","wikidata":"https://www.wikidata.org/wiki/Q4915005","display_name":"Biological network","level":2,"score":0.46900439262390137},{"id":"https://openalex.org/C55037315","wikidata":"https://www.wikidata.org/wiki/Q5421151","display_name":"Experimental data","level":2,"score":0.4474843442440033},{"id":"https://openalex.org/C207850805","wikidata":"https://www.wikidata.org/wiki/Q269608","display_name":"Reverse engineering","level":2,"score":0.4347204864025116},{"id":"https://openalex.org/C3019813237","wikidata":"https://www.wikidata.org/wiki/Q65089264","display_name":"Model validation","level":2,"score":0.42027774453163147},{"id":"https://openalex.org/C199360897","wikidata":"https://www.wikidata.org/wiki/Q9143","display_name":"Programming language","level":1,"score":0.3658411502838135},{"id":"https://openalex.org/C124101348","wikidata":"https://www.wikidata.org/wiki/Q172491","display_name":"Data mining","level":1,"score":0.356644868850708},{"id":"https://openalex.org/C115903868","wikidata":"https://www.wikidata.org/wiki/Q80993","display_name":"Software engineering","level":1,"score":0.35397037863731384},{"id":"https://openalex.org/C60644358","wikidata":"https://www.wikidata.org/wiki/Q128570","display_name":"Bioinformatics","level":1,"score":0.1948239803314209},{"id":"https://openalex.org/C111919701","wikidata":"https://www.wikidata.org/wiki/Q9135","display_name":"Operating system","level":1,"score":0.17200550436973572},{"id":"https://openalex.org/C78045399","wikidata":"https://www.wikidata.org/wiki/Q11214","display_name":"Differential equation","level":2,"score":0.15307071805000305},{"id":"https://openalex.org/C2522767166","wikidata":"https://www.wikidata.org/wiki/Q2374463","display_name":"Data science","level":1,"score":0.12084203958511353},{"id":"https://openalex.org/C86803240","wikidata":"https://www.wikidata.org/wiki/Q420","display_name":"Biology","level":0,"score":0.09197282791137695},{"id":"https://openalex.org/C33923547","wikidata":"https://www.wikidata.org/wiki/Q395","display_name":"Mathematics","level":0,"score":0.07864919304847717},{"id":"https://openalex.org/C134306372","wikidata":"https://www.wikidata.org/wiki/Q7754","display_name":"Mathematical analysis","level":1,"score":0.0},{"id":"https://openalex.org/C8797682","wikidata":"https://www.wikidata.org/wiki/Q2115","display_name":"XML","level":2,"score":0.0},{"id":"https://openalex.org/C45874996","wikidata":"https://www.wikidata.org/wiki/Q37045","display_name":"Markup language","level":3,"score":0.0},{"id":"https://openalex.org/C105795698","wikidata":"https://www.wikidata.org/wiki/Q12483","display_name":"Statistics","level":1,"score":0.0},{"id":"https://openalex.org/C28826006","wikidata":"https://www.wikidata.org/wiki/Q33521","display_name":"Applied mathematics","level":1,"score":0.0}],"mesh":[{"descriptor_ui":"D003198","descriptor_name":"Computer Simulation","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D003198","descriptor_name":"Computer Simulation","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D003198","descriptor_name":"Computer Simulation","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D008954","descriptor_name":"Models, Biological","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D008954","descriptor_name":"Models, Biological","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D008954","descriptor_name":"Models, Biological","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D011381","descriptor_name":"Programming Languages","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D011381","descriptor_name":"Programming Languages","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D011381","descriptor_name":"Programming Languages","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D011506","descriptor_name":"Proteins","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D011506","descriptor_name":"Proteins","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D011506","descriptor_name":"Proteins","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D012984","descriptor_name":"Software","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D012984","descriptor_name":"Software","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D012984","descriptor_name":"Software","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D014176","descriptor_name":"Protein Biosynthesis","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D014176","descriptor_name":"Protein Biosynthesis","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D014176","descriptor_name":"Protein Biosynthesis","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D016208","descriptor_name":"Databases, Factual","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D016208","descriptor_name":"Databases, Factual","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D016208","descriptor_name":"Databases, Factual","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D017076","descriptor_name":"Computer-Aided Design","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D017076","descriptor_name":"Computer-Aided Design","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D017076","descriptor_name":"Computer-Aided Design","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D019295","descriptor_name":"Computational Biology","qualifier_ui":"Q000379","qualifier_name":"methods","is_major_topic":false},{"descriptor_ui":"D019295","descriptor_name":"Computational Biology","qualifier_ui":"Q000379","qualifier_name":"methods","is_major_topic":false},{"descriptor_ui":"D019295","descriptor_name":"Computational Biology","qualifier_ui":"Q000379","qualifier_name":"methods","is_major_topic":false},{"descriptor_ui":"D049490","descriptor_name":"Systems Biology","qualifier_ui":"Q000379","qualifier_name":"methods","is_major_topic":false},{"descriptor_ui":"D049490","descriptor_name":"Systems Biology","qualifier_ui":"Q000379","qualifier_name":"methods","is_major_topic":false},{"descriptor_ui":"D049490","descriptor_name":"Systems Biology","qualifier_ui":"Q000379","qualifier_name":"methods","is_major_topic":false}],"locations_count":5,"locations":[{"id":"doi:10.1093/bioinformatics/btq409","is_oa":true,"landing_page_url":"https://doi.org/10.1093/bioinformatics/btq409","pdf_url":"https://academic.oup.com/bioinformatics/article-pdf/26/18/2298/48855211/bioinformatics_26_18_2298.pdf","source":{"id":"https://openalex.org/S52395412","display_name":"Bioinformatics","issn_l":"1367-4803","issn":["1367-4803","1367-4811"],"is_oa":false,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310311648","host_organization_name":"Oxford University Press","host_organization_lineage":["https://openalex.org/P4310311648","https://openalex.org/P4310311647"],"host_organization_lineage_names":["Oxford University Press","University of Oxford"],"type":"journal"},"license":"cc-by-nc","license_id":"https://openalex.org/licenses/cc-by-nc","version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Bioinformatics","raw_type":"journal-article"},{"id":"pmid:20628073","is_oa":false,"landing_page_url":"https://pubmed.ncbi.nlm.nih.gov/20628073","pdf_url":null,"source":{"id":"https://openalex.org/S4306525036","display_name":"PubMed","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I1299303238","host_organization_name":"National Institutes of Health","host_organization_lineage":["https://openalex.org/I1299303238"],"host_organization_lineage_names":[],"type":"repository"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Bioinformatics (Oxford, England)","raw_type":null},{"id":"pmh:oai:CiteSeerX.psu:10.1.1.824.4517","is_oa":false,"landing_page_url":"http://citeseerx.ist.psu.edu/viewdoc/summary?doi=10.1.1.824.4517","pdf_url":null,"source":null,"license":null,"license_id":null,"version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":"http://bioinformatics.oxfordjournals.org/content/early/2010/07/13/bioinformatics.btq409.full.pdf","raw_type":"text"},{"id":"pmh:oai:HAL:hal-04814810v1","is_oa":false,"landing_page_url":"https://hal.science/hal-04814810","pdf_url":null,"source":{"id":"https://openalex.org/S4406922466","display_name":"SPIRE - Sciences Po Institutional REpository","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":null,"host_organization_name":null,"host_organization_lineage":[],"host_organization_lineage_names":[],"type":"repository"},"license":null,"license_id":null,"version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":"Bioinformatics, 2010, 26 (18), pp.2298-2304. &#x27E8;10.1093/bioinformatics/btq409&#x27E9;","raw_type":"Journal articles"},{"id":"pmh:oai:pubmedcentral.nih.gov:2935418","is_oa":true,"landing_page_url":"https://www.ncbi.nlm.nih.gov/pmc/articles/2935418","pdf_url":null,"source":{"id":"https://openalex.org/S2764455111","display_name":"PubMed Central","issn_l":null,"issn":null,"is_oa":true,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I1299303238","host_organization_name":"National Institutes of Health","host_organization_lineage":["https://openalex.org/I1299303238"],"host_organization_lineage_names":[],"type":"repository"},"license":null,"license_id":null,"version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":"Bioinformatics","raw_type":"Text"}],"best_oa_location":{"id":"doi:10.1093/bioinformatics/btq409","is_oa":true,"landing_page_url":"https://doi.org/10.1093/bioinformatics/btq409","pdf_url":"https://academic.oup.com/bioinformatics/article-pdf/26/18/2298/48855211/bioinformatics_26_18_2298.pdf","source":{"id":"https://openalex.org/S52395412","display_name":"Bioinformatics","issn_l":"1367-4803","issn":["1367-4803","1367-4811"],"is_oa":false,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310311648","host_organization_name":"Oxford University Press","host_organization_lineage":["https://openalex.org/P4310311648","https://openalex.org/P4310311647"],"host_organization_lineage_names":["Oxford University Press","University of Oxford"],"type":"journal"},"license":"cc-by-nc","license_id":"https://openalex.org/licenses/cc-by-nc","version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Bioinformatics","raw_type":"journal-article"},"sustainable_development_goals":[{"score":0.4699999988079071,"display_name":"Industry, innovation and infrastructure","id":"https://metadata.un.org/sdg/9"}],"awards":[{"id":"https://openalex.org/G289819648","display_name":null,"funder_award_id":"Brazil (CNPq)","funder_id":"https://openalex.org/F4320322025","funder_display_name":"Conselho Nacional de Desenvolvimento Cient\u00edfico e Tecnol\u00f3gico"},{"id":"https://openalex.org/G97595544","display_name":null,"funder_award_id":"(INSERM)","funder_id":"https://openalex.org/F4320320893","funder_display_name":"Institut National de la Sant\u00e9 et de la Recherche M\u00e9dicale"}],"funders":[{"id":"https://openalex.org/F4320320893","display_name":"Institut National de la Sant\u00e9 et de la Recherche M\u00e9dicale","ror":"https://ror.org/02vjkv261"},{"id":"https://openalex.org/F4320322025","display_name":"Conselho Nacional de Desenvolvimento Cient\u00edfico e Tecnol\u00f3gico","ror":"https://ror.org/03swz6y49"},{"id":"https://openalex.org/F4320323012","display_name":"Instituto Nacional de Ci\u00eancia e Tecnologia em Toxinas","ror":"https://ror.org/026g3rz20"}],"has_content":{"pdf":true,"grobid_xml":true},"content_urls":{"pdf":"https://content.openalex.org/works/W2154525756.pdf","grobid_xml":"https://content.openalex.org/works/W2154525756.grobid-xml"},"referenced_works_count":38,"referenced_works":["https://openalex.org/W1645305843","https://openalex.org/W1842089573","https://openalex.org/W1974553906","https://openalex.org/W1982834739","https://openalex.org/W1983849957","https://openalex.org/W1995668527","https://openalex.org/W1998505309","https://openalex.org/W2011318772","https://openalex.org/W2013330518","https://openalex.org/W2019619327","https://openalex.org/W2029108612","https://openalex.org/W2038264484","https://openalex.org/W2045095831","https://openalex.org/W2045478141","https://openalex.org/W2046906423","https://openalex.org/W2047882868","https://openalex.org/W2051266530","https://openalex.org/W2054835595","https://openalex.org/W2069571028","https://openalex.org/W2076931029","https://openalex.org/W2100352075","https://openalex.org/W2101506009","https://openalex.org/W2102530672","https://openalex.org/W2117364474","https://openalex.org/W2118902880","https://openalex.org/W2124926885","https://openalex.org/W2134759932","https://openalex.org/W2135280136","https://openalex.org/W2136297637","https://openalex.org/W2144588155","https://openalex.org/W2149202606","https://openalex.org/W2150700412","https://openalex.org/W2150908245","https://openalex.org/W2153517004","https://openalex.org/W2772934464","https://openalex.org/W4211208250","https://openalex.org/W6638861505","https://openalex.org/W6680029972"],"related_works":["https://openalex.org/W2023783465","https://openalex.org/W2528467228","https://openalex.org/W2793858867","https://openalex.org/W1533895412","https://openalex.org/W2051503810","https://openalex.org/W2800988627","https://openalex.org/W3110830656","https://openalex.org/W2612856160","https://openalex.org/W3136254756","https://openalex.org/W2103641729"],"abstract_inverted_index":{"BioNetCAD":[0],"is":[1,7,17],"freely":[2,18],"available":[3],"at":[4,20],"http://www.sysdiag.cnrs.fr/BioNetCAD.":[5],"It":[6],"implemented":[8],"in":[9],"Java":[10],"and":[11],"supported":[12],"on":[13],"MS":[14],"Windows.":[15],"CompuBioTicDB":[16],"accessible":[19],"http://compubiotic.sysdiag.cnrs.fr/.":[21]},"counts_by_year":[{"year":2026,"cited_by_count":1},{"year":2022,"cited_by_count":1},{"year":2020,"cited_by_count":1},{"year":2019,"cited_by_count":1},{"year":2018,"cited_by_count":1},{"year":2016,"cited_by_count":1},{"year":2015,"cited_by_count":2},{"year":2013,"cited_by_count":4},{"year":2012,"cited_by_count":2}],"updated_date":"2026-04-21T08:09:41.155169","created_date":"2025-10-10T00:00:00"}
