{"id":"https://openalex.org/W2161538187","doi":"https://doi.org/10.1093/bioinformatics/btq402","title":"Fast overlapping of protein contact maps by alignment of eigenvectors","display_name":"Fast overlapping of protein contact maps by alignment of eigenvectors","publication_year":2010,"publication_date":"2010-07-07","ids":{"openalex":"https://openalex.org/W2161538187","doi":"https://doi.org/10.1093/bioinformatics/btq402","mag":"2161538187","pmid":"https://pubmed.ncbi.nlm.nih.gov/20610612"},"language":"en","primary_location":{"id":"doi:10.1093/bioinformatics/btq402","is_oa":false,"landing_page_url":"https://doi.org/10.1093/bioinformatics/btq402","pdf_url":null,"source":{"id":"https://openalex.org/S52395412","display_name":"Bioinformatics","issn_l":"1367-4803","issn":["1367-4803","1367-4811"],"is_oa":false,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310311648","host_organization_name":"Oxford University Press","host_organization_lineage":["https://openalex.org/P4310311648","https://openalex.org/P4310311647"],"host_organization_lineage_names":["Oxford University Press","University of Oxford"],"type":"journal"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Bioinformatics","raw_type":"journal-article"},"type":"article","indexed_in":["crossref","doaj","pubmed"],"open_access":{"is_oa":false,"oa_status":"closed","oa_url":null,"any_repository_has_fulltext":false},"authorships":[{"author_position":"first","author":{"id":"https://openalex.org/A5055593623","display_name":"Pietro Di Lena","orcid":"https://orcid.org/0000-0002-1838-8918"},"institutions":[{"id":"https://openalex.org/I9360294","display_name":"University of Bologna","ror":"https://ror.org/01111rn36","country_code":"IT","type":"education","lineage":["https://openalex.org/I9360294"]}],"countries":["IT"],"is_corresponding":true,"raw_author_name":"Pietro Di Lena","raw_affiliation_strings":["1 Department of Computer Science, University of Bologna, Mura Anteo Zamboni 7 and 2Biocomputing Group, University of Bologna, Via S.Giacomo 9/2, 40127 Bologna, Italy"],"affiliations":[{"raw_affiliation_string":"1 Department of Computer Science, University of Bologna, Mura Anteo Zamboni 7 and 2Biocomputing Group, University of Bologna, Via S.Giacomo 9/2, 40127 Bologna, Italy","institution_ids":["https://openalex.org/I9360294"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5060232841","display_name":"Piero Fariselli","orcid":"https://orcid.org/0000-0003-1811-4762"},"institutions":[{"id":"https://openalex.org/I9360294","display_name":"University of Bologna","ror":"https://ror.org/01111rn36","country_code":"IT","type":"education","lineage":["https://openalex.org/I9360294"]}],"countries":["IT"],"is_corresponding":false,"raw_author_name":"Piero Fariselli","raw_affiliation_strings":["1 Department of Computer Science, University of Bologna, Mura Anteo Zamboni 7 and 2Biocomputing Group, University of Bologna, Via S.Giacomo 9/2, 40127 Bologna, Italy"],"affiliations":[{"raw_affiliation_string":"1 Department of Computer Science, University of Bologna, Mura Anteo Zamboni 7 and 2Biocomputing Group, University of Bologna, Via S.Giacomo 9/2, 40127 Bologna, Italy","institution_ids":["https://openalex.org/I9360294"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5061123241","display_name":"Luciano Margara","orcid":"https://orcid.org/0000-0001-7816-1937"},"institutions":[{"id":"https://openalex.org/I9360294","display_name":"University of Bologna","ror":"https://ror.org/01111rn36","country_code":"IT","type":"education","lineage":["https://openalex.org/I9360294"]}],"countries":["IT"],"is_corresponding":false,"raw_author_name":"Luciano Margara","raw_affiliation_strings":["1 Department of Computer Science, University of Bologna, Mura Anteo Zamboni 7 and 2Biocomputing Group, University of Bologna, Via S.Giacomo 9/2, 40127 Bologna, Italy"],"affiliations":[{"raw_affiliation_string":"1 Department of Computer Science, University of Bologna, Mura Anteo Zamboni 7 and 2Biocomputing Group, University of Bologna, Via S.Giacomo 9/2, 40127 Bologna, Italy","institution_ids":["https://openalex.org/I9360294"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5017769494","display_name":"Marco Vassura","orcid":null},"institutions":[{"id":"https://openalex.org/I9360294","display_name":"University of Bologna","ror":"https://ror.org/01111rn36","country_code":"IT","type":"education","lineage":["https://openalex.org/I9360294"]}],"countries":["IT"],"is_corresponding":false,"raw_author_name":"Marco Vassura","raw_affiliation_strings":["1 Department of Computer Science, University of Bologna, Mura Anteo Zamboni 7 and 2Biocomputing Group, University of Bologna, Via S.Giacomo 9/2, 40127 Bologna, Italy"],"affiliations":[{"raw_affiliation_string":"1 Department of Computer Science, University of Bologna, Mura Anteo Zamboni 7 and 2Biocomputing Group, University of Bologna, Via S.Giacomo 9/2, 40127 Bologna, Italy","institution_ids":["https://openalex.org/I9360294"]}]},{"author_position":"last","author":{"id":"https://openalex.org/A5053410790","display_name":"Rita Casadio","orcid":"https://orcid.org/0000-0002-7462-7039"},"institutions":[{"id":"https://openalex.org/I9360294","display_name":"University of Bologna","ror":"https://ror.org/01111rn36","country_code":"IT","type":"education","lineage":["https://openalex.org/I9360294"]}],"countries":["IT"],"is_corresponding":false,"raw_author_name":"Rita Casadio","raw_affiliation_strings":["1 Department of Computer Science, University of Bologna, Mura Anteo Zamboni 7 and 2Biocomputing Group, University of Bologna, Via S.Giacomo 9/2, 40127 Bologna, Italy"],"affiliations":[{"raw_affiliation_string":"1 Department of Computer Science, University of Bologna, Mura Anteo Zamboni 7 and 2Biocomputing Group, University of Bologna, Via S.Giacomo 9/2, 40127 Bologna, Italy","institution_ids":["https://openalex.org/I9360294"]}]}],"institutions":[],"countries_distinct_count":1,"institutions_distinct_count":5,"corresponding_author_ids":["https://openalex.org/A5055593623"],"corresponding_institution_ids":["https://openalex.org/I9360294"],"apc_list":{"value":3618,"currency":"USD","value_usd":3618},"apc_paid":null,"fwci":1.3217,"has_fulltext":false,"cited_by_count":36,"citation_normalized_percentile":{"value":0.79824871,"is_in_top_1_percent":false,"is_in_top_10_percent":false},"cited_by_percentile_year":{"min":89,"max":98},"biblio":{"volume":"26","issue":"18","first_page":"2250","last_page":"2258"},"is_retracted":false,"is_paratext":false,"is_xpac":false,"primary_topic":{"id":"https://openalex.org/T10044","display_name":"Protein Structure and Dynamics","score":0.998199999332428,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},"topics":[{"id":"https://openalex.org/T10044","display_name":"Protein Structure and Dynamics","score":0.998199999332428,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},{"id":"https://openalex.org/T10519","display_name":"Advanced Proteomics Techniques and Applications","score":0.9973000288009644,"subfield":{"id":"https://openalex.org/subfields/1607","display_name":"Spectroscopy"},"field":{"id":"https://openalex.org/fields/16","display_name":"Chemistry"},"domain":{"id":"https://openalex.org/domains/3","display_name":"Physical Sciences"}},{"id":"https://openalex.org/T10887","display_name":"Bioinformatics and Genomic Networks","score":0.9972000122070312,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}}],"keywords":[{"id":"https://openalex.org/keywords/similarity","display_name":"Similarity (geometry)","score":0.6895361542701721},{"id":"https://openalex.org/keywords/eigenvalues-and-eigenvectors","display_name":"Eigenvalues and eigenvectors","score":0.6523921489715576},{"id":"https://openalex.org/keywords/computer-science","display_name":"Computer science","score":0.622751772403717},{"id":"https://openalex.org/keywords/algorithm","display_name":"Algorithm","score":0.5475633144378662},{"id":"https://openalex.org/keywords/heuristic","display_name":"Heuristic","score":0.5290469527244568},{"id":"https://openalex.org/keywords/structural-alignment","display_name":"Structural alignment","score":0.5172393918037415},{"id":"https://openalex.org/keywords/noise","display_name":"Noise (video)","score":0.5002536773681641},{"id":"https://openalex.org/keywords/scale","display_name":"Scale (ratio)","score":0.457890123128891},{"id":"https://openalex.org/keywords/pattern-recognition","display_name":"Pattern recognition (psychology)","score":0.42836999893188477},{"id":"https://openalex.org/keywords/artificial-intelligence","display_name":"Artificial intelligence","score":0.36897507309913635},{"id":"https://openalex.org/keywords/data-mining","display_name":"Data mining","score":0.3316391408443451},{"id":"https://openalex.org/keywords/sequence-alignment","display_name":"Sequence alignment","score":0.22170427441596985},{"id":"https://openalex.org/keywords/image","display_name":"Image (mathematics)","score":0.19858378171920776}],"concepts":[{"id":"https://openalex.org/C103278499","wikidata":"https://www.wikidata.org/wiki/Q254465","display_name":"Similarity (geometry)","level":3,"score":0.6895361542701721},{"id":"https://openalex.org/C158693339","wikidata":"https://www.wikidata.org/wiki/Q190524","display_name":"Eigenvalues and eigenvectors","level":2,"score":0.6523921489715576},{"id":"https://openalex.org/C41008148","wikidata":"https://www.wikidata.org/wiki/Q21198","display_name":"Computer science","level":0,"score":0.622751772403717},{"id":"https://openalex.org/C11413529","wikidata":"https://www.wikidata.org/wiki/Q8366","display_name":"Algorithm","level":1,"score":0.5475633144378662},{"id":"https://openalex.org/C173801870","wikidata":"https://www.wikidata.org/wiki/Q201413","display_name":"Heuristic","level":2,"score":0.5290469527244568},{"id":"https://openalex.org/C4668613","wikidata":"https://www.wikidata.org/wiki/Q4116110","display_name":"Structural alignment","level":5,"score":0.5172393918037415},{"id":"https://openalex.org/C99498987","wikidata":"https://www.wikidata.org/wiki/Q2210247","display_name":"Noise (video)","level":3,"score":0.5002536773681641},{"id":"https://openalex.org/C2778755073","wikidata":"https://www.wikidata.org/wiki/Q10858537","display_name":"Scale (ratio)","level":2,"score":0.457890123128891},{"id":"https://openalex.org/C153180895","wikidata":"https://www.wikidata.org/wiki/Q7148389","display_name":"Pattern recognition (psychology)","level":2,"score":0.42836999893188477},{"id":"https://openalex.org/C154945302","wikidata":"https://www.wikidata.org/wiki/Q11660","display_name":"Artificial intelligence","level":1,"score":0.36897507309913635},{"id":"https://openalex.org/C124101348","wikidata":"https://www.wikidata.org/wiki/Q172491","display_name":"Data mining","level":1,"score":0.3316391408443451},{"id":"https://openalex.org/C45484198","wikidata":"https://www.wikidata.org/wiki/Q827246","display_name":"Sequence alignment","level":4,"score":0.22170427441596985},{"id":"https://openalex.org/C115961682","wikidata":"https://www.wikidata.org/wiki/Q860623","display_name":"Image (mathematics)","level":2,"score":0.19858378171920776},{"id":"https://openalex.org/C185592680","wikidata":"https://www.wikidata.org/wiki/Q2329","display_name":"Chemistry","level":0,"score":0.0},{"id":"https://openalex.org/C104317684","wikidata":"https://www.wikidata.org/wiki/Q7187","display_name":"Gene","level":2,"score":0.0},{"id":"https://openalex.org/C121332964","wikidata":"https://www.wikidata.org/wiki/Q413","display_name":"Physics","level":0,"score":0.0},{"id":"https://openalex.org/C62520636","wikidata":"https://www.wikidata.org/wiki/Q944","display_name":"Quantum mechanics","level":1,"score":0.0},{"id":"https://openalex.org/C167625842","wikidata":"https://www.wikidata.org/wiki/Q899763","display_name":"Peptide sequence","level":3,"score":0.0},{"id":"https://openalex.org/C55493867","wikidata":"https://www.wikidata.org/wiki/Q7094","display_name":"Biochemistry","level":1,"score":0.0}],"mesh":[{"descriptor_ui":"D000465","descriptor_name":"Algorithms","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D000465","descriptor_name":"Algorithms","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D000465","descriptor_name":"Algorithms","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D011487","descriptor_name":"Protein Conformation","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D011487","descriptor_name":"Protein Conformation","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D011487","descriptor_name":"Protein Conformation","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D011506","descriptor_name":"Proteins","qualifier_ui":"Q000502","qualifier_name":"physiology","is_major_topic":false},{"descriptor_ui":"D011506","descriptor_name":"Proteins","qualifier_ui":"Q000502","qualifier_name":"physiology","is_major_topic":false},{"descriptor_ui":"D011506","descriptor_name":"Proteins","qualifier_ui":"Q000502","qualifier_name":"physiology","is_major_topic":false},{"descriptor_ui":"D011506","descriptor_name":"Proteins","qualifier_ui":"Q000737","qualifier_name":"chemistry","is_major_topic":false},{"descriptor_ui":"D011506","descriptor_name":"Proteins","qualifier_ui":"Q000737","qualifier_name":"chemistry","is_major_topic":false},{"descriptor_ui":"D011506","descriptor_name":"Proteins","qualifier_ui":"Q000737","qualifier_name":"chemistry","is_major_topic":false},{"descriptor_ui":"D019295","descriptor_name":"Computational Biology","qualifier_ui":"Q000379","qualifier_name":"methods","is_major_topic":false},{"descriptor_ui":"D019295","descriptor_name":"Computational Biology","qualifier_ui":"Q000379","qualifier_name":"methods","is_major_topic":false},{"descriptor_ui":"D019295","descriptor_name":"Computational Biology","qualifier_ui":"Q000379","qualifier_name":"methods","is_major_topic":false}],"locations_count":4,"locations":[{"id":"doi:10.1093/bioinformatics/btq402","is_oa":false,"landing_page_url":"https://doi.org/10.1093/bioinformatics/btq402","pdf_url":null,"source":{"id":"https://openalex.org/S52395412","display_name":"Bioinformatics","issn_l":"1367-4803","issn":["1367-4803","1367-4811"],"is_oa":false,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310311648","host_organization_name":"Oxford University Press","host_organization_lineage":["https://openalex.org/P4310311648","https://openalex.org/P4310311647"],"host_organization_lineage_names":["Oxford University Press","University of Oxford"],"type":"journal"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Bioinformatics","raw_type":"journal-article"},{"id":"pmid:20610612","is_oa":false,"landing_page_url":"https://pubmed.ncbi.nlm.nih.gov/20610612","pdf_url":null,"source":{"id":"https://openalex.org/S4306525036","display_name":"PubMed","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I1299303238","host_organization_name":"National Institutes of Health","host_organization_lineage":["https://openalex.org/I1299303238"],"host_organization_lineage_names":[],"type":"repository"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Bioinformatics (Oxford, England)","raw_type":null},{"id":"pmh:oai:cris.unibo.it:11585/100472","is_oa":false,"landing_page_url":"http://hdl.handle.net/11585/100472","pdf_url":null,"source":{"id":"https://openalex.org/S4306402579","display_name":"Archivio istituzionale della ricerca (Alma Mater Studiorum Universit\u00e0 di Bologna)","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I4210117483","host_organization_name":"Istituto di Ematologia di Bologna","host_organization_lineage":["https://openalex.org/I4210117483"],"host_organization_lineage_names":[],"type":"repository"},"license":null,"license_id":null,"version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":"","raw_type":"info:eu-repo/semantics/article"},{"id":"pmh:oai:www.research.unipd.it:11577/3184056","is_oa":false,"landing_page_url":"http://hdl.handle.net/11577/3184056","pdf_url":null,"source":{"id":"https://openalex.org/S4306402547","display_name":"Padua Research Archive (University of Padova)","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I138689650","host_organization_name":"University of Padua","host_organization_lineage":["https://openalex.org/I138689650"],"host_organization_lineage_names":[],"type":"repository"},"license":null,"license_id":null,"version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":null,"raw_type":"info:eu-repo/semantics/article"}],"best_oa_location":null,"sustainable_development_goals":[],"awards":[],"funders":[],"has_content":{"grobid_xml":false,"pdf":false},"content_urls":null,"referenced_works_count":53,"referenced_works":["https://openalex.org/W159504957","https://openalex.org/W250062009","https://openalex.org/W1485231155","https://openalex.org/W1485732691","https://openalex.org/W1518994209","https://openalex.org/W1546813853","https://openalex.org/W1548843388","https://openalex.org/W1679685030","https://openalex.org/W1888237630","https://openalex.org/W1916412816","https://openalex.org/W1975168057","https://openalex.org/W1978273076","https://openalex.org/W1982420443","https://openalex.org/W1982950909","https://openalex.org/W1984497398","https://openalex.org/W1987446297","https://openalex.org/W1987570579","https://openalex.org/W1991115149","https://openalex.org/W2006796203","https://openalex.org/W2009836662","https://openalex.org/W2022058405","https://openalex.org/W2040594319","https://openalex.org/W2053281575","https://openalex.org/W2057251215","https://openalex.org/W2064651547","https://openalex.org/W2073660699","https://openalex.org/W2074231493","https://openalex.org/W2088367821","https://openalex.org/W2091582642","https://openalex.org/W2097573050","https://openalex.org/W2102245393","https://openalex.org/W2107085419","https://openalex.org/W2107110246","https://openalex.org/W2107356010","https://openalex.org/W2108182844","https://openalex.org/W2110397834","https://openalex.org/W2126482097","https://openalex.org/W2128653811","https://openalex.org/W2136567909","https://openalex.org/W2151554142","https://openalex.org/W2152132697","https://openalex.org/W2152326664","https://openalex.org/W2158714788","https://openalex.org/W2169941775","https://openalex.org/W3145013517","https://openalex.org/W4230665353","https://openalex.org/W6606397475","https://openalex.org/W6632783189","https://openalex.org/W6639784608","https://openalex.org/W6652751874","https://openalex.org/W6666858101","https://openalex.org/W6676053018","https://openalex.org/W6986100638"],"related_works":["https://openalex.org/W2165749285","https://openalex.org/W2375480909","https://openalex.org/W2353314428","https://openalex.org/W2474979212","https://openalex.org/W2562455930","https://openalex.org/W2001036795","https://openalex.org/W2154748900","https://openalex.org/W3093811938","https://openalex.org/W4390092784","https://openalex.org/W127450631"],"abstract_inverted_index":{"Available":[0],"at":[1],"http://bioinformatics.cs.unibo.it/Al-Eigen.":[2]},"counts_by_year":[{"year":2024,"cited_by_count":1},{"year":2023,"cited_by_count":1},{"year":2021,"cited_by_count":4},{"year":2020,"cited_by_count":4},{"year":2019,"cited_by_count":5},{"year":2017,"cited_by_count":5},{"year":2015,"cited_by_count":2},{"year":2014,"cited_by_count":4},{"year":2013,"cited_by_count":3},{"year":2012,"cited_by_count":3}],"updated_date":"2025-11-06T03:46:38.306776","created_date":"2025-10-10T00:00:00"}
