{"id":"https://openalex.org/W2059736685","doi":"https://doi.org/10.1093/bioinformatics/btq393","title":"Inferring cancer subnetwork markers using density-constrained biclustering","display_name":"Inferring cancer subnetwork markers using density-constrained biclustering","publication_year":2010,"publication_date":"2010-09-04","ids":{"openalex":"https://openalex.org/W2059736685","doi":"https://doi.org/10.1093/bioinformatics/btq393","mag":"2059736685","pmid":"https://pubmed.ncbi.nlm.nih.gov/20823331"},"language":"en","primary_location":{"id":"doi:10.1093/bioinformatics/btq393","is_oa":true,"landing_page_url":"https://doi.org/10.1093/bioinformatics/btq393","pdf_url":"https://academic.oup.com/bioinformatics/article-pdf/26/18/i625/48859000/bioinformatics_26_18_i625.pdf","source":{"id":"https://openalex.org/S52395412","display_name":"Bioinformatics","issn_l":"1367-4803","issn":["1367-4803","1367-4811"],"is_oa":false,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310311648","host_organization_name":"Oxford University Press","host_organization_lineage":["https://openalex.org/P4310311648","https://openalex.org/P4310311647"],"host_organization_lineage_names":["Oxford University Press","University of Oxford"],"type":"journal"},"license":"cc-by-nc","license_id":"https://openalex.org/licenses/cc-by-nc","version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Bioinformatics","raw_type":"journal-article"},"type":"article","indexed_in":["crossref","doaj","pubmed"],"open_access":{"is_oa":true,"oa_status":"hybrid","oa_url":"https://academic.oup.com/bioinformatics/article-pdf/26/18/i625/48859000/bioinformatics_26_18_i625.pdf","any_repository_has_fulltext":true},"authorships":[{"author_position":"first","author":{"id":"https://openalex.org/A5022850021","display_name":"Phuong Dao","orcid":"https://orcid.org/0000-0001-5285-6271"},"institutions":[{"id":"https://openalex.org/I141945490","display_name":"University of British Columbia","ror":"https://ror.org/03rmrcq20","country_code":"CA","type":"education","lineage":["https://openalex.org/I141945490"]},{"id":"https://openalex.org/I95457486","display_name":"University of California, Berkeley","ror":"https://ror.org/01an7q238","country_code":"US","type":"education","lineage":["https://openalex.org/I95457486"]},{"id":"https://openalex.org/I18014758","display_name":"Simon Fraser University","ror":"https://ror.org/0213rcc28","country_code":"CA","type":"education","lineage":["https://openalex.org/I18014758"]}],"countries":["CA","US"],"is_corresponding":true,"raw_author_name":"Phuong Dao","raw_affiliation_strings":["1 School of Computing Science, Simon Fraser University, Burnaby, 2University of British Columbia Centre for Disease Control, Vancouver, 3GenomeDX Biosciences Inc., Vancouver, BC, Canada and 4Department of Mathematics, University of California, Berkeley, CA, USA"],"affiliations":[{"raw_affiliation_string":"1 School of Computing Science, Simon Fraser University, Burnaby, 2University of British Columbia Centre for Disease Control, Vancouver, 3GenomeDX Biosciences Inc., Vancouver, BC, Canada and 4Department of Mathematics, University of California, Berkeley, CA, USA","institution_ids":["https://openalex.org/I141945490","https://openalex.org/I18014758","https://openalex.org/I95457486"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5103083871","display_name":"Recep \u00c7olak","orcid":"https://orcid.org/0000-0002-7119-6202"},"institutions":[{"id":"https://openalex.org/I141945490","display_name":"University of British Columbia","ror":"https://ror.org/03rmrcq20","country_code":"CA","type":"education","lineage":["https://openalex.org/I141945490"]},{"id":"https://openalex.org/I95457486","display_name":"University of California, Berkeley","ror":"https://ror.org/01an7q238","country_code":"US","type":"education","lineage":["https://openalex.org/I95457486"]},{"id":"https://openalex.org/I18014758","display_name":"Simon Fraser University","ror":"https://ror.org/0213rcc28","country_code":"CA","type":"education","lineage":["https://openalex.org/I18014758"]}],"countries":["CA","US"],"is_corresponding":false,"raw_author_name":"Recep Colak","raw_affiliation_strings":["1 School of Computing Science, Simon Fraser University, Burnaby, 2University of British Columbia Centre for Disease Control, Vancouver, 3GenomeDX Biosciences Inc., Vancouver, BC, Canada and 4Department of Mathematics, University of California, Berkeley, CA, USA"],"affiliations":[{"raw_affiliation_string":"1 School of Computing Science, Simon Fraser University, Burnaby, 2University of British Columbia Centre for Disease Control, Vancouver, 3GenomeDX Biosciences Inc., Vancouver, BC, Canada and 4Department of Mathematics, University of California, Berkeley, CA, USA","institution_ids":["https://openalex.org/I141945490","https://openalex.org/I18014758","https://openalex.org/I95457486"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5065344327","display_name":"Raheleh Salari","orcid":null},"institutions":[{"id":"https://openalex.org/I18014758","display_name":"Simon Fraser University","ror":"https://ror.org/0213rcc28","country_code":"CA","type":"education","lineage":["https://openalex.org/I18014758"]},{"id":"https://openalex.org/I95457486","display_name":"University of California, Berkeley","ror":"https://ror.org/01an7q238","country_code":"US","type":"education","lineage":["https://openalex.org/I95457486"]},{"id":"https://openalex.org/I141945490","display_name":"University of British Columbia","ror":"https://ror.org/03rmrcq20","country_code":"CA","type":"education","lineage":["https://openalex.org/I141945490"]}],"countries":["CA","US"],"is_corresponding":false,"raw_author_name":"Raheleh Salari","raw_affiliation_strings":["1 School of Computing Science, Simon Fraser University, Burnaby, 2University of British Columbia Centre for Disease Control, Vancouver, 3GenomeDX Biosciences Inc., Vancouver, BC, Canada and 4Department of Mathematics, University of California, Berkeley, CA, USA"],"affiliations":[{"raw_affiliation_string":"1 School of Computing Science, Simon Fraser University, Burnaby, 2University of British Columbia Centre for Disease Control, Vancouver, 3GenomeDX Biosciences Inc., Vancouver, BC, Canada and 4Department of Mathematics, University of California, Berkeley, CA, USA","institution_ids":["https://openalex.org/I141945490","https://openalex.org/I18014758","https://openalex.org/I95457486"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5069877936","display_name":"Flavia Moser","orcid":null},"institutions":[{"id":"https://openalex.org/I95457486","display_name":"University of California, Berkeley","ror":"https://ror.org/01an7q238","country_code":"US","type":"education","lineage":["https://openalex.org/I95457486"]},{"id":"https://openalex.org/I141945490","display_name":"University of British Columbia","ror":"https://ror.org/03rmrcq20","country_code":"CA","type":"education","lineage":["https://openalex.org/I141945490"]},{"id":"https://openalex.org/I18014758","display_name":"Simon Fraser University","ror":"https://ror.org/0213rcc28","country_code":"CA","type":"education","lineage":["https://openalex.org/I18014758"]}],"countries":["CA","US"],"is_corresponding":false,"raw_author_name":"Flavia Moser","raw_affiliation_strings":["1 School of Computing Science, Simon Fraser University, Burnaby, 2University of British Columbia Centre for Disease Control, Vancouver, 3GenomeDX Biosciences Inc., Vancouver, BC, Canada and 4Department of Mathematics, University of California, Berkeley, CA, USA"],"affiliations":[{"raw_affiliation_string":"1 School of Computing Science, Simon Fraser University, Burnaby, 2University of British Columbia Centre for Disease Control, Vancouver, 3GenomeDX Biosciences Inc., Vancouver, BC, Canada and 4Department of Mathematics, University of California, Berkeley, CA, USA","institution_ids":["https://openalex.org/I141945490","https://openalex.org/I18014758","https://openalex.org/I95457486"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5014582211","display_name":"Elai Davicioni","orcid":"https://orcid.org/0000-0001-9136-099X"},"institutions":[{"id":"https://openalex.org/I18014758","display_name":"Simon Fraser University","ror":"https://ror.org/0213rcc28","country_code":"CA","type":"education","lineage":["https://openalex.org/I18014758"]},{"id":"https://openalex.org/I141945490","display_name":"University of British Columbia","ror":"https://ror.org/03rmrcq20","country_code":"CA","type":"education","lineage":["https://openalex.org/I141945490"]},{"id":"https://openalex.org/I95457486","display_name":"University of California, Berkeley","ror":"https://ror.org/01an7q238","country_code":"US","type":"education","lineage":["https://openalex.org/I95457486"]}],"countries":["CA","US"],"is_corresponding":false,"raw_author_name":"Elai Davicioni","raw_affiliation_strings":["1 School of Computing Science, Simon Fraser University, Burnaby, 2University of British Columbia Centre for Disease Control, Vancouver, 3GenomeDX Biosciences Inc., Vancouver, BC, Canada and 4Department of Mathematics, University of California, Berkeley, CA, USA"],"affiliations":[{"raw_affiliation_string":"1 School of Computing Science, Simon Fraser University, Burnaby, 2University of British Columbia Centre for Disease Control, Vancouver, 3GenomeDX Biosciences Inc., Vancouver, BC, Canada and 4Department of Mathematics, University of California, Berkeley, CA, USA","institution_ids":["https://openalex.org/I141945490","https://openalex.org/I18014758","https://openalex.org/I95457486"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5001148638","display_name":"Alexander Sch\u00f6nhuth","orcid":"https://orcid.org/0000-0003-3529-0856"},"institutions":[{"id":"https://openalex.org/I95457486","display_name":"University of California, Berkeley","ror":"https://ror.org/01an7q238","country_code":"US","type":"education","lineage":["https://openalex.org/I95457486"]},{"id":"https://openalex.org/I141945490","display_name":"University of British Columbia","ror":"https://ror.org/03rmrcq20","country_code":"CA","type":"education","lineage":["https://openalex.org/I141945490"]},{"id":"https://openalex.org/I18014758","display_name":"Simon Fraser University","ror":"https://ror.org/0213rcc28","country_code":"CA","type":"education","lineage":["https://openalex.org/I18014758"]}],"countries":["CA","US"],"is_corresponding":false,"raw_author_name":"Alexander Sch\u00f6nhuth","raw_affiliation_strings":["1 School of Computing Science, Simon Fraser University, Burnaby, 2University of British Columbia Centre for Disease Control, Vancouver, 3GenomeDX Biosciences Inc., Vancouver, BC, Canada and 4Department of Mathematics, University of California, Berkeley, CA, USA"],"affiliations":[{"raw_affiliation_string":"1 School of Computing Science, Simon Fraser University, Burnaby, 2University of British Columbia Centre for Disease Control, Vancouver, 3GenomeDX Biosciences Inc., Vancouver, BC, Canada and 4Department of Mathematics, University of California, Berkeley, CA, USA","institution_ids":["https://openalex.org/I141945490","https://openalex.org/I18014758","https://openalex.org/I95457486"]}]},{"author_position":"last","author":{"id":"https://openalex.org/A5018267399","display_name":"Martin Ester","orcid":"https://orcid.org/0000-0001-7732-2815"},"institutions":[{"id":"https://openalex.org/I141945490","display_name":"University of British Columbia","ror":"https://ror.org/03rmrcq20","country_code":"CA","type":"education","lineage":["https://openalex.org/I141945490"]},{"id":"https://openalex.org/I95457486","display_name":"University of California, Berkeley","ror":"https://ror.org/01an7q238","country_code":"US","type":"education","lineage":["https://openalex.org/I95457486"]},{"id":"https://openalex.org/I18014758","display_name":"Simon Fraser University","ror":"https://ror.org/0213rcc28","country_code":"CA","type":"education","lineage":["https://openalex.org/I18014758"]}],"countries":["CA","US"],"is_corresponding":false,"raw_author_name":"Martin Ester","raw_affiliation_strings":["1 School of Computing Science, Simon Fraser University, Burnaby, 2University of British Columbia Centre for Disease Control, Vancouver, 3GenomeDX Biosciences Inc., Vancouver, BC, Canada and 4Department of Mathematics, University of California, Berkeley, CA, USA"],"affiliations":[{"raw_affiliation_string":"1 School of Computing Science, Simon Fraser University, Burnaby, 2University of British Columbia Centre for Disease Control, Vancouver, 3GenomeDX Biosciences Inc., Vancouver, BC, Canada and 4Department of Mathematics, University of California, Berkeley, CA, USA","institution_ids":["https://openalex.org/I141945490","https://openalex.org/I18014758","https://openalex.org/I95457486"]}]}],"institutions":[],"countries_distinct_count":2,"institutions_distinct_count":7,"corresponding_author_ids":["https://openalex.org/A5022850021"],"corresponding_institution_ids":["https://openalex.org/I141945490","https://openalex.org/I18014758","https://openalex.org/I95457486"],"apc_list":{"value":3618,"currency":"USD","value_usd":3618},"apc_paid":{"value":3618,"currency":"USD","value_usd":3618},"fwci":3.1176,"has_fulltext":true,"cited_by_count":54,"citation_normalized_percentile":{"value":0.91888375,"is_in_top_1_percent":false,"is_in_top_10_percent":true},"cited_by_percentile_year":{"min":90,"max":99},"biblio":{"volume":"26","issue":"18","first_page":"i625","last_page":"i631"},"is_retracted":false,"is_paratext":false,"is_xpac":false,"primary_topic":{"id":"https://openalex.org/T10885","display_name":"Gene expression and cancer classification","score":0.9998000264167786,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},"topics":[{"id":"https://openalex.org/T10885","display_name":"Gene expression and cancer classification","score":0.9998000264167786,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},{"id":"https://openalex.org/T10887","display_name":"Bioinformatics and Genomic Networks","score":0.9994999766349792,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},{"id":"https://openalex.org/T11970","display_name":"Molecular Biology Techniques and Applications","score":0.998199999332428,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}}],"keywords":[{"id":"https://openalex.org/keywords/subnetwork","display_name":"Subnetwork","score":0.9767860770225525},{"id":"https://openalex.org/keywords/computer-science","display_name":"Computer science","score":0.6292218565940857},{"id":"https://openalex.org/keywords/cancer","display_name":"Cancer","score":0.5600928664207458},{"id":"https://openalex.org/keywords/computational-biology","display_name":"Computational biology","score":0.5132381916046143},{"id":"https://openalex.org/keywords/software","display_name":"Software","score":0.4701167643070221},{"id":"https://openalex.org/keywords/breast-cancer","display_name":"Breast cancer","score":0.46230924129486084},{"id":"https://openalex.org/keywords/biclustering","display_name":"Biclustering","score":0.43128150701522827},{"id":"https://openalex.org/keywords/artificial-intelligence","display_name":"Artificial intelligence","score":0.2957143187522888},{"id":"https://openalex.org/keywords/biology","display_name":"Biology","score":0.2748832702636719},{"id":"https://openalex.org/keywords/cluster-analysis","display_name":"Cluster analysis","score":0.2491474151611328},{"id":"https://openalex.org/keywords/genetics","display_name":"Genetics","score":0.15458813309669495}],"concepts":[{"id":"https://openalex.org/C2780186347","wikidata":"https://www.wikidata.org/wiki/Q11414","display_name":"Subnetwork","level":2,"score":0.9767860770225525},{"id":"https://openalex.org/C41008148","wikidata":"https://www.wikidata.org/wiki/Q21198","display_name":"Computer science","level":0,"score":0.6292218565940857},{"id":"https://openalex.org/C121608353","wikidata":"https://www.wikidata.org/wiki/Q12078","display_name":"Cancer","level":2,"score":0.5600928664207458},{"id":"https://openalex.org/C70721500","wikidata":"https://www.wikidata.org/wiki/Q177005","display_name":"Computational biology","level":1,"score":0.5132381916046143},{"id":"https://openalex.org/C2777904410","wikidata":"https://www.wikidata.org/wiki/Q7397","display_name":"Software","level":2,"score":0.4701167643070221},{"id":"https://openalex.org/C530470458","wikidata":"https://www.wikidata.org/wiki/Q128581","display_name":"Breast cancer","level":3,"score":0.46230924129486084},{"id":"https://openalex.org/C144817290","wikidata":"https://www.wikidata.org/wiki/Q2976575","display_name":"Biclustering","level":5,"score":0.43128150701522827},{"id":"https://openalex.org/C154945302","wikidata":"https://www.wikidata.org/wiki/Q11660","display_name":"Artificial intelligence","level":1,"score":0.2957143187522888},{"id":"https://openalex.org/C86803240","wikidata":"https://www.wikidata.org/wiki/Q420","display_name":"Biology","level":0,"score":0.2748832702636719},{"id":"https://openalex.org/C73555534","wikidata":"https://www.wikidata.org/wiki/Q622825","display_name":"Cluster analysis","level":2,"score":0.2491474151611328},{"id":"https://openalex.org/C54355233","wikidata":"https://www.wikidata.org/wiki/Q7162","display_name":"Genetics","level":1,"score":0.15458813309669495},{"id":"https://openalex.org/C38652104","wikidata":"https://www.wikidata.org/wiki/Q3510521","display_name":"Computer security","level":1,"score":0.0},{"id":"https://openalex.org/C94641424","wikidata":"https://www.wikidata.org/wiki/Q5172845","display_name":"Correlation clustering","level":3,"score":0.0},{"id":"https://openalex.org/C33704608","wikidata":"https://www.wikidata.org/wiki/Q5014717","display_name":"CURE data clustering algorithm","level":4,"score":0.0},{"id":"https://openalex.org/C199360897","wikidata":"https://www.wikidata.org/wiki/Q9143","display_name":"Programming language","level":1,"score":0.0}],"mesh":[{"descriptor_ui":"D000465","descriptor_name":"Algorithms","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D000465","descriptor_name":"Algorithms","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D000465","descriptor_name":"Algorithms","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D001943","descriptor_name":"Breast Neoplasms","qualifier_ui":"Q000235","qualifier_name":"genetics","is_major_topic":false},{"descriptor_ui":"D001943","descriptor_name":"Breast Neoplasms","qualifier_ui":"Q000235","qualifier_name":"genetics","is_major_topic":false},{"descriptor_ui":"D001943","descriptor_name":"Breast Neoplasms","qualifier_ui":"Q000235","qualifier_name":"genetics","is_major_topic":false},{"descriptor_ui":"D003110","descriptor_name":"Colonic Neoplasms","qualifier_ui":"Q000235","qualifier_name":"genetics","is_major_topic":false},{"descriptor_ui":"D003110","descriptor_name":"Colonic Neoplasms","qualifier_ui":"Q000235","qualifier_name":"genetics","is_major_topic":false},{"descriptor_ui":"D003110","descriptor_name":"Colonic Neoplasms","qualifier_ui":"Q000235","qualifier_name":"genetics","is_major_topic":false},{"descriptor_ui":"D005260","descriptor_name":"Female","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D005260","descriptor_name":"Female","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D005260","descriptor_name":"Female","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D006801","descriptor_name":"Humans","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D006801","descriptor_name":"Humans","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D006801","descriptor_name":"Humans","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D009369","descriptor_name":"Neoplasms","qualifier_ui":"Q000145","qualifier_name":"classification","is_major_topic":false},{"descriptor_ui":"D009369","descriptor_name":"Neoplasms","qualifier_ui":"Q000145","qualifier_name":"classification","is_major_topic":false},{"descriptor_ui":"D009369","descriptor_name":"Neoplasms","qualifier_ui":"Q000145","qualifier_name":"classification","is_major_topic":false},{"descriptor_ui":"D009369","descriptor_name":"Neoplasms","qualifier_ui":"Q000235","qualifier_name":"genetics","is_major_topic":false},{"descriptor_ui":"D009369","descriptor_name":"Neoplasms","qualifier_ui":"Q000235","qualifier_name":"genetics","is_major_topic":false},{"descriptor_ui":"D009369","descriptor_name":"Neoplasms","qualifier_ui":"Q000235","qualifier_name":"genetics","is_major_topic":false},{"descriptor_ui":"D012984","descriptor_name":"Software","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D012984","descriptor_name":"Software","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D012984","descriptor_name":"Software","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D014408","descriptor_name":"Biomarkers, Tumor","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D014408","descriptor_name":"Biomarkers, Tumor","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D014408","descriptor_name":"Biomarkers, Tumor","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D016158","descriptor_name":"Genes, p53","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D016158","descriptor_name":"Genes, p53","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D016158","descriptor_name":"Genes, p53","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D019295","descriptor_name":"Computational Biology","qualifier_ui":"Q000379","qualifier_name":"methods","is_major_topic":false},{"descriptor_ui":"D019295","descriptor_name":"Computational Biology","qualifier_ui":"Q000379","qualifier_name":"methods","is_major_topic":false},{"descriptor_ui":"D019295","descriptor_name":"Computational Biology","qualifier_ui":"Q000379","qualifier_name":"methods","is_major_topic":false},{"descriptor_ui":"D019985","descriptor_name":"Benchmarking","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D019985","descriptor_name":"Benchmarking","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D019985","descriptor_name":"Benchmarking","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D020869","descriptor_name":"Gene Expression Profiling","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D020869","descriptor_name":"Gene Expression Profiling","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D020869","descriptor_name":"Gene Expression Profiling","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D053263","descriptor_name":"Gene Regulatory Networks","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D053263","descriptor_name":"Gene Regulatory Networks","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D053263","descriptor_name":"Gene Regulatory Networks","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true}],"locations_count":4,"locations":[{"id":"doi:10.1093/bioinformatics/btq393","is_oa":true,"landing_page_url":"https://doi.org/10.1093/bioinformatics/btq393","pdf_url":"https://academic.oup.com/bioinformatics/article-pdf/26/18/i625/48859000/bioinformatics_26_18_i625.pdf","source":{"id":"https://openalex.org/S52395412","display_name":"Bioinformatics","issn_l":"1367-4803","issn":["1367-4803","1367-4811"],"is_oa":false,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310311648","host_organization_name":"Oxford University Press","host_organization_lineage":["https://openalex.org/P4310311648","https://openalex.org/P4310311647"],"host_organization_lineage_names":["Oxford University Press","University of Oxford"],"type":"journal"},"license":"cc-by-nc","license_id":"https://openalex.org/licenses/cc-by-nc","version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Bioinformatics","raw_type":"journal-article"},{"id":"pmid:20823331","is_oa":false,"landing_page_url":"https://pubmed.ncbi.nlm.nih.gov/20823331","pdf_url":null,"source":{"id":"https://openalex.org/S4306525036","display_name":"PubMed","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I1299303238","host_organization_name":"National Institutes of Health","host_organization_lineage":["https://openalex.org/I1299303238"],"host_organization_lineage_names":[],"type":"repository"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Bioinformatics (Oxford, England)","raw_type":null},{"id":"pmh:cwi:oai:cwi.nl:17981","is_oa":false,"landing_page_url":"https://ir.cwi.nl/pub/17981","pdf_url":null,"source":{"id":"https://openalex.org/S4306401843","display_name":"Data Archiving and Networked Services (DANS)","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I1322597698","host_organization_name":"Royal Netherlands Academy of Arts and Sciences","host_organization_lineage":["https://openalex.org/I1322597698"],"host_organization_lineage_names":[],"type":"repository"},"license":null,"license_id":null,"version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":"Bioinformatics, 26(18), i625 - i631","raw_type":"info:eu-repo/semantics/article"},{"id":"pmh:oai:pubmedcentral.nih.gov:2935415","is_oa":true,"landing_page_url":"https://www.ncbi.nlm.nih.gov/pmc/articles/2935415","pdf_url":null,"source":{"id":"https://openalex.org/S2764455111","display_name":"PubMed Central","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I1299303238","host_organization_name":"National Institutes of Health","host_organization_lineage":["https://openalex.org/I1299303238"],"host_organization_lineage_names":[],"type":"repository"},"license":null,"license_id":null,"version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":"Bioinformatics","raw_type":"Text"}],"best_oa_location":{"id":"doi:10.1093/bioinformatics/btq393","is_oa":true,"landing_page_url":"https://doi.org/10.1093/bioinformatics/btq393","pdf_url":"https://academic.oup.com/bioinformatics/article-pdf/26/18/i625/48859000/bioinformatics_26_18_i625.pdf","source":{"id":"https://openalex.org/S52395412","display_name":"Bioinformatics","issn_l":"1367-4803","issn":["1367-4803","1367-4811"],"is_oa":false,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310311648","host_organization_name":"Oxford University Press","host_organization_lineage":["https://openalex.org/P4310311648","https://openalex.org/P4310311647"],"host_organization_lineage_names":["Oxford University Press","University of Oxford"],"type":"journal"},"license":"cc-by-nc","license_id":"https://openalex.org/licenses/cc-by-nc","version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Bioinformatics","raw_type":"journal-article"},"sustainable_development_goals":[],"awards":[{"id":"https://openalex.org/G1304196372","display_name":null,"funder_award_id":"Program","funder_id":"https://openalex.org/F4320334593","funder_display_name":"Natural Sciences and Engineering Research Council of Canada"},{"id":"https://openalex.org/G2165548363","display_name":null,"funder_award_id":"Canada","funder_id":"https://openalex.org/F4320334593","funder_display_name":"Natural Sciences and Engineering Research Council of Canada"}],"funders":[{"id":"https://openalex.org/F4320322675","display_name":"Mitacs","ror":"https://ror.org/00cjrc276"},{"id":"https://openalex.org/F4320334593","display_name":"Natural Sciences and Engineering Research Council of Canada","ror":"https://ror.org/01h531d29"}],"has_content":{"pdf":true,"grobid_xml":true},"content_urls":{"pdf":"https://content.openalex.org/works/W2059736685.pdf","grobid_xml":"https://content.openalex.org/works/W2059736685.grobid-xml"},"referenced_works_count":41,"referenced_works":["https://openalex.org/W67958692","https://openalex.org/W193575463","https://openalex.org/W1535333477","https://openalex.org/W1539778282","https://openalex.org/W1607267312","https://openalex.org/W1663251599","https://openalex.org/W1976564639","https://openalex.org/W1981765976","https://openalex.org/W2000771269","https://openalex.org/W2001258296","https://openalex.org/W2007843607","https://openalex.org/W2011356131","https://openalex.org/W2029175285","https://openalex.org/W2062041987","https://openalex.org/W2067298429","https://openalex.org/W2097554668","https://openalex.org/W2108698786","https://openalex.org/W2109363337","https://openalex.org/W2110482684","https://openalex.org/W2112811019","https://openalex.org/W2113613985","https://openalex.org/W2129843621","https://openalex.org/W2133289216","https://openalex.org/W2135056923","https://openalex.org/W2135273565","https://openalex.org/W2147246240","https://openalex.org/W2153056550","https://openalex.org/W2154947819","https://openalex.org/W2157132621","https://openalex.org/W2160450758","https://openalex.org/W2163563958","https://openalex.org/W2166468869","https://openalex.org/W2168546553","https://openalex.org/W2169905457","https://openalex.org/W2171662214","https://openalex.org/W3119651796","https://openalex.org/W4212845555","https://openalex.org/W4239175824","https://openalex.org/W6607821713","https://openalex.org/W6645572052","https://openalex.org/W6676799139"],"related_works":["https://openalex.org/W3196332669","https://openalex.org/W3130591221","https://openalex.org/W2297592050","https://openalex.org/W2112936375","https://openalex.org/W4365129602","https://openalex.org/W2014447844","https://openalex.org/W4286448049","https://openalex.org/W2113427382","https://openalex.org/W1595863544","https://openalex.org/W2114670814"],"abstract_inverted_index":{"Software":[0],"is":[1],"available":[2],"on":[3],"request.":[4]},"counts_by_year":[{"year":2024,"cited_by_count":1},{"year":2022,"cited_by_count":1},{"year":2021,"cited_by_count":2},{"year":2020,"cited_by_count":3},{"year":2019,"cited_by_count":1},{"year":2018,"cited_by_count":3},{"year":2017,"cited_by_count":2},{"year":2016,"cited_by_count":4},{"year":2015,"cited_by_count":6},{"year":2014,"cited_by_count":8},{"year":2013,"cited_by_count":8},{"year":2012,"cited_by_count":12}],"updated_date":"2026-04-18T07:56:08.524223","created_date":"2025-10-10T00:00:00"}
