{"id":"https://openalex.org/W2127770193","doi":"https://doi.org/10.1093/bioinformatics/btq391","title":"BioXSD: the common data-exchange format for everyday bioinformatics web services","display_name":"BioXSD: the common data-exchange format for everyday bioinformatics web services","publication_year":2010,"publication_date":"2010-09-04","ids":{"openalex":"https://openalex.org/W2127770193","doi":"https://doi.org/10.1093/bioinformatics/btq391","mag":"2127770193","pmid":"https://pubmed.ncbi.nlm.nih.gov/20823319"},"language":"en","primary_location":{"id":"doi:10.1093/bioinformatics/btq391","is_oa":true,"landing_page_url":"https://doi.org/10.1093/bioinformatics/btq391","pdf_url":"https://academic.oup.com/bioinformatics/article-pdf/26/18/i540/541290/btq391.pdf","source":{"id":"https://openalex.org/S52395412","display_name":"Bioinformatics","issn_l":"1367-4803","issn":["1367-4803","1367-4811"],"is_oa":false,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310311648","host_organization_name":"Oxford University Press","host_organization_lineage":["https://openalex.org/P4310311648","https://openalex.org/P4310311647"],"host_organization_lineage_names":["Oxford University Press","University of Oxford"],"type":"journal"},"license":"cc-by-nc","license_id":"https://openalex.org/licenses/cc-by-nc","version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Bioinformatics","raw_type":"journal-article"},"type":"article","indexed_in":["crossref","doaj","pubmed"],"open_access":{"is_oa":true,"oa_status":"hybrid","oa_url":"https://academic.oup.com/bioinformatics/article-pdf/26/18/i540/541290/btq391.pdf","any_repository_has_fulltext":true},"authorships":[{"author_position":"first","author":{"id":"https://openalex.org/A5007975575","display_name":"Mat\u00fa\u0161 Kala\u0161","orcid":"https://orcid.org/0000-0002-1509-4981"},"institutions":[{"id":"https://openalex.org/I100532134","display_name":"Universit\u00e9 Claude Bernard Lyon 1","ror":"https://ror.org/029brtt94","country_code":"FR","type":"education","lineage":["https://openalex.org/I100532134","https://openalex.org/I203339264"]},{"id":"https://openalex.org/I1294671590","display_name":"Centre National de la Recherche Scientifique","ror":"https://ror.org/02feahw73","country_code":"FR","type":"government","lineage":["https://openalex.org/I1294671590"]},{"id":"https://openalex.org/I1303153112","display_name":"European Bioinformatics Institute","ror":"https://ror.org/02catss52","country_code":"GB","type":"facility","lineage":["https://openalex.org/I1303153112","https://openalex.org/I4210138560"]},{"id":"https://openalex.org/I4210102807","display_name":"Uni Research (Norway)","ror":"https://ror.org/016tr2j79","country_code":"NO","type":"company","lineage":["https://openalex.org/I4210102807"]},{"id":"https://openalex.org/I4432739","display_name":"University of Bergen","ror":"https://ror.org/03zga2b32","country_code":"NO","type":"education","lineage":["https://openalex.org/I4432739"]},{"id":"https://openalex.org/I96673099","display_name":"Technical University of Denmark","ror":"https://ror.org/04qtj9h94","country_code":"DK","type":"education","lineage":["https://openalex.org/I96673099"]}],"countries":["DK","FR","GB","NO"],"is_corresponding":true,"raw_author_name":"Mat\u00fa\u0161 Kala\u0161","raw_affiliation_strings":["1 Computational Biology Unit, Bergen Center for Computational Science, Uni Research, 5008 Bergen, Norway, 2Department of Informatics, University of Bergen, 5008 Bergen, Norway, 3Universit\u00e9 Lyon 1; CNRS, UMR 5086; IBCP, Institut de Biologie et Chimie des Prot\u00e9ines, 69367 Lyon Cedex 07, France, 4Center for Biological Sequence Analysis, Department of Systems Biology, Technical University of Denmark, 2800 Kongens Lyngby, Denmark, 5Institute for Bioinformatics, Center for Biotechnology, Bielefeld University, 33594 Bielefeld, Germany, 6School of Computer Science, The University of Manchester, Manchester, M13 9PL, UK and 7European Bioinformatics Institute, EMBL, Wellcome Trust Genome Campus, Hinxton, Cambridge, CB10 1SD, UK"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"1 Computational Biology Unit, Bergen Center for Computational Science, Uni Research, 5008 Bergen, Norway, 2Department of Informatics, University of Bergen, 5008 Bergen, Norway, 3Universit\u00e9 Lyon 1; CNRS, UMR 5086; IBCP, Institut de Biologie et Chimie des Prot\u00e9ines, 69367 Lyon Cedex 07, France, 4Center for Biological Sequence Analysis, Department of Systems Biology, Technical University of Denmark, 2800 Kongens Lyngby, Denmark, 5Institute for Bioinformatics, Center for Biotechnology, Bielefeld University, 33594 Bielefeld, Germany, 6School of Computer Science, The University of Manchester, Manchester, M13 9PL, UK and 7European Bioinformatics Institute, EMBL, Wellcome Trust Genome Campus, Hinxton, Cambridge, CB10 1SD, UK","institution_ids":["https://openalex.org/I4432739","https://openalex.org/I4210102807","https://openalex.org/I96673099","https://openalex.org/I1303153112","https://openalex.org/I100532134","https://openalex.org/I1294671590"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5058793391","display_name":"P\u00e5l Puntervoll","orcid":"https://orcid.org/0000-0003-0093-7816"},"institutions":[{"id":"https://openalex.org/I100532134","display_name":"Universit\u00e9 Claude Bernard Lyon 1","ror":"https://ror.org/029brtt94","country_code":"FR","type":"education","lineage":["https://openalex.org/I100532134","https://openalex.org/I203339264"]},{"id":"https://openalex.org/I1294671590","display_name":"Centre National de la Recherche Scientifique","ror":"https://ror.org/02feahw73","country_code":"FR","type":"government","lineage":["https://openalex.org/I1294671590"]},{"id":"https://openalex.org/I1303153112","display_name":"European Bioinformatics Institute","ror":"https://ror.org/02catss52","country_code":"GB","type":"facility","lineage":["https://openalex.org/I1303153112","https://openalex.org/I4210138560"]},{"id":"https://openalex.org/I4210102807","display_name":"Uni Research (Norway)","ror":"https://ror.org/016tr2j79","country_code":"NO","type":"company","lineage":["https://openalex.org/I4210102807"]},{"id":"https://openalex.org/I4432739","display_name":"University of Bergen","ror":"https://ror.org/03zga2b32","country_code":"NO","type":"education","lineage":["https://openalex.org/I4432739"]},{"id":"https://openalex.org/I96673099","display_name":"Technical University of Denmark","ror":"https://ror.org/04qtj9h94","country_code":"DK","type":"education","lineage":["https://openalex.org/I96673099"]}],"countries":["DK","FR","GB","NO"],"is_corresponding":false,"raw_author_name":"P\u00e5l Puntervoll","raw_affiliation_strings":["1 Computational Biology Unit, Bergen Center for Computational Science, Uni Research, 5008 Bergen, Norway, 2Department of Informatics, University of Bergen, 5008 Bergen, Norway, 3Universit\u00e9 Lyon 1; CNRS, UMR 5086; IBCP, Institut de Biologie et Chimie des Prot\u00e9ines, 69367 Lyon Cedex 07, France, 4Center for Biological Sequence Analysis, Department of Systems Biology, Technical University of Denmark, 2800 Kongens Lyngby, Denmark, 5Institute for Bioinformatics, Center for Biotechnology, Bielefeld University, 33594 Bielefeld, Germany, 6School of Computer Science, The University of Manchester, Manchester, M13 9PL, UK and 7European Bioinformatics Institute, EMBL, Wellcome Trust Genome Campus, Hinxton, Cambridge, CB10 1SD, UK"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"1 Computational Biology Unit, Bergen Center for Computational Science, Uni Research, 5008 Bergen, Norway, 2Department of Informatics, University of Bergen, 5008 Bergen, Norway, 3Universit\u00e9 Lyon 1; CNRS, UMR 5086; IBCP, Institut de Biologie et Chimie des Prot\u00e9ines, 69367 Lyon Cedex 07, France, 4Center for Biological Sequence Analysis, Department of Systems Biology, Technical University of Denmark, 2800 Kongens Lyngby, Denmark, 5Institute for Bioinformatics, Center for Biotechnology, Bielefeld University, 33594 Bielefeld, Germany, 6School of Computer Science, The University of Manchester, Manchester, M13 9PL, UK and 7European Bioinformatics Institute, EMBL, Wellcome Trust Genome Campus, Hinxton, Cambridge, CB10 1SD, UK","institution_ids":["https://openalex.org/I4432739","https://openalex.org/I4210102807","https://openalex.org/I96673099","https://openalex.org/I1303153112","https://openalex.org/I100532134","https://openalex.org/I1294671590"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5075500350","display_name":"Alexandre Joseph","orcid":null},"institutions":[{"id":"https://openalex.org/I100532134","display_name":"Universit\u00e9 Claude Bernard Lyon 1","ror":"https://ror.org/029brtt94","country_code":"FR","type":"education","lineage":["https://openalex.org/I100532134","https://openalex.org/I203339264"]},{"id":"https://openalex.org/I1294671590","display_name":"Centre National de la Recherche Scientifique","ror":"https://ror.org/02feahw73","country_code":"FR","type":"government","lineage":["https://openalex.org/I1294671590"]},{"id":"https://openalex.org/I1303153112","display_name":"European Bioinformatics Institute","ror":"https://ror.org/02catss52","country_code":"GB","type":"facility","lineage":["https://openalex.org/I1303153112","https://openalex.org/I4210138560"]},{"id":"https://openalex.org/I4210102807","display_name":"Uni Research (Norway)","ror":"https://ror.org/016tr2j79","country_code":"NO","type":"company","lineage":["https://openalex.org/I4210102807"]},{"id":"https://openalex.org/I4432739","display_name":"University of Bergen","ror":"https://ror.org/03zga2b32","country_code":"NO","type":"education","lineage":["https://openalex.org/I4432739"]},{"id":"https://openalex.org/I96673099","display_name":"Technical University of Denmark","ror":"https://ror.org/04qtj9h94","country_code":"DK","type":"education","lineage":["https://openalex.org/I96673099"]}],"countries":["DK","FR","GB","NO"],"is_corresponding":false,"raw_author_name":"Alexandre Joseph","raw_affiliation_strings":["1 Computational Biology Unit, Bergen Center for Computational Science, Uni Research, 5008 Bergen, Norway, 2Department of Informatics, University of Bergen, 5008 Bergen, Norway, 3Universit\u00e9 Lyon 1; CNRS, UMR 5086; IBCP, Institut de Biologie et Chimie des Prot\u00e9ines, 69367 Lyon Cedex 07, France, 4Center for Biological Sequence Analysis, Department of Systems Biology, Technical University of Denmark, 2800 Kongens Lyngby, Denmark, 5Institute for Bioinformatics, Center for Biotechnology, Bielefeld University, 33594 Bielefeld, Germany, 6School of Computer Science, The University of Manchester, Manchester, M13 9PL, UK and 7European Bioinformatics Institute, EMBL, Wellcome Trust Genome Campus, Hinxton, Cambridge, CB10 1SD, UK"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"1 Computational Biology Unit, Bergen Center for Computational Science, Uni Research, 5008 Bergen, Norway, 2Department of Informatics, University of Bergen, 5008 Bergen, Norway, 3Universit\u00e9 Lyon 1; CNRS, UMR 5086; IBCP, Institut de Biologie et Chimie des Prot\u00e9ines, 69367 Lyon Cedex 07, France, 4Center for Biological Sequence Analysis, Department of Systems Biology, Technical University of Denmark, 2800 Kongens Lyngby, Denmark, 5Institute for Bioinformatics, Center for Biotechnology, Bielefeld University, 33594 Bielefeld, Germany, 6School of Computer Science, The University of Manchester, Manchester, M13 9PL, UK and 7European Bioinformatics Institute, EMBL, Wellcome Trust Genome Campus, Hinxton, Cambridge, CB10 1SD, UK","institution_ids":["https://openalex.org/I4432739","https://openalex.org/I4210102807","https://openalex.org/I96673099","https://openalex.org/I1303153112","https://openalex.org/I100532134","https://openalex.org/I1294671590"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5049234642","display_name":"Edita Barta\u0161evi\u010di\u016bt\u0117","orcid":null},"institutions":[{"id":"https://openalex.org/I100532134","display_name":"Universit\u00e9 Claude Bernard Lyon 1","ror":"https://ror.org/029brtt94","country_code":"FR","type":"education","lineage":["https://openalex.org/I100532134","https://openalex.org/I203339264"]},{"id":"https://openalex.org/I1294671590","display_name":"Centre National de la Recherche Scientifique","ror":"https://ror.org/02feahw73","country_code":"FR","type":"government","lineage":["https://openalex.org/I1294671590"]},{"id":"https://openalex.org/I1303153112","display_name":"European Bioinformatics Institute","ror":"https://ror.org/02catss52","country_code":"GB","type":"facility","lineage":["https://openalex.org/I1303153112","https://openalex.org/I4210138560"]},{"id":"https://openalex.org/I4210102807","display_name":"Uni Research (Norway)","ror":"https://ror.org/016tr2j79","country_code":"NO","type":"company","lineage":["https://openalex.org/I4210102807"]},{"id":"https://openalex.org/I4432739","display_name":"University of Bergen","ror":"https://ror.org/03zga2b32","country_code":"NO","type":"education","lineage":["https://openalex.org/I4432739"]},{"id":"https://openalex.org/I96673099","display_name":"Technical University of Denmark","ror":"https://ror.org/04qtj9h94","country_code":"DK","type":"education","lineage":["https://openalex.org/I96673099"]}],"countries":["DK","FR","GB","NO"],"is_corresponding":false,"raw_author_name":"Edita Barta\u0161evi\u010di\u016bt\u0117","raw_affiliation_strings":["1 Computational Biology Unit, Bergen Center for Computational Science, Uni Research, 5008 Bergen, Norway, 2Department of Informatics, University of Bergen, 5008 Bergen, Norway, 3Universit\u00e9 Lyon 1; CNRS, UMR 5086; IBCP, Institut de Biologie et Chimie des Prot\u00e9ines, 69367 Lyon Cedex 07, France, 4Center for Biological Sequence Analysis, Department of Systems Biology, Technical University of Denmark, 2800 Kongens Lyngby, Denmark, 5Institute for Bioinformatics, Center for Biotechnology, Bielefeld University, 33594 Bielefeld, Germany, 6School of Computer Science, The University of Manchester, Manchester, M13 9PL, UK and 7European Bioinformatics Institute, EMBL, Wellcome Trust Genome Campus, Hinxton, Cambridge, CB10 1SD, UK"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"1 Computational Biology Unit, Bergen Center for Computational Science, Uni Research, 5008 Bergen, Norway, 2Department of Informatics, University of Bergen, 5008 Bergen, Norway, 3Universit\u00e9 Lyon 1; CNRS, UMR 5086; IBCP, Institut de Biologie et Chimie des Prot\u00e9ines, 69367 Lyon Cedex 07, France, 4Center for Biological Sequence Analysis, Department of Systems Biology, Technical University of Denmark, 2800 Kongens Lyngby, Denmark, 5Institute for Bioinformatics, Center for Biotechnology, Bielefeld University, 33594 Bielefeld, Germany, 6School of Computer Science, The University of Manchester, Manchester, M13 9PL, UK and 7European Bioinformatics Institute, EMBL, Wellcome Trust Genome Campus, Hinxton, Cambridge, CB10 1SD, UK","institution_ids":["https://openalex.org/I4432739","https://openalex.org/I4210102807","https://openalex.org/I96673099","https://openalex.org/I1303153112","https://openalex.org/I100532134","https://openalex.org/I1294671590"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5060717574","display_name":"Armin T\u00f6pfer","orcid":"https://orcid.org/0000-0003-1637-1466"},"institutions":[{"id":"https://openalex.org/I100532134","display_name":"Universit\u00e9 Claude Bernard Lyon 1","ror":"https://ror.org/029brtt94","country_code":"FR","type":"education","lineage":["https://openalex.org/I100532134","https://openalex.org/I203339264"]},{"id":"https://openalex.org/I1294671590","display_name":"Centre National de la Recherche Scientifique","ror":"https://ror.org/02feahw73","country_code":"FR","type":"government","lineage":["https://openalex.org/I1294671590"]},{"id":"https://openalex.org/I1303153112","display_name":"European Bioinformatics Institute","ror":"https://ror.org/02catss52","country_code":"GB","type":"facility","lineage":["https://openalex.org/I1303153112","https://openalex.org/I4210138560"]},{"id":"https://openalex.org/I4210102807","display_name":"Uni Research (Norway)","ror":"https://ror.org/016tr2j79","country_code":"NO","type":"company","lineage":["https://openalex.org/I4210102807"]},{"id":"https://openalex.org/I4432739","display_name":"University of Bergen","ror":"https://ror.org/03zga2b32","country_code":"NO","type":"education","lineage":["https://openalex.org/I4432739"]},{"id":"https://openalex.org/I96673099","display_name":"Technical University of Denmark","ror":"https://ror.org/04qtj9h94","country_code":"DK","type":"education","lineage":["https://openalex.org/I96673099"]}],"countries":["DK","FR","GB","NO"],"is_corresponding":false,"raw_author_name":"Armin T\u00f6pfer","raw_affiliation_strings":["1 Computational Biology Unit, Bergen Center for Computational Science, Uni Research, 5008 Bergen, Norway, 2Department of Informatics, University of Bergen, 5008 Bergen, Norway, 3Universit\u00e9 Lyon 1; CNRS, UMR 5086; IBCP, Institut de Biologie et Chimie des Prot\u00e9ines, 69367 Lyon Cedex 07, France, 4Center for Biological Sequence Analysis, Department of Systems Biology, Technical University of Denmark, 2800 Kongens Lyngby, Denmark, 5Institute for Bioinformatics, Center for Biotechnology, Bielefeld University, 33594 Bielefeld, Germany, 6School of Computer Science, The University of Manchester, Manchester, M13 9PL, UK and 7European Bioinformatics Institute, EMBL, Wellcome Trust Genome Campus, Hinxton, Cambridge, CB10 1SD, UK"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"1 Computational Biology Unit, Bergen Center for Computational Science, Uni Research, 5008 Bergen, Norway, 2Department of Informatics, University of Bergen, 5008 Bergen, Norway, 3Universit\u00e9 Lyon 1; CNRS, UMR 5086; IBCP, Institut de Biologie et Chimie des Prot\u00e9ines, 69367 Lyon Cedex 07, France, 4Center for Biological Sequence Analysis, Department of Systems Biology, Technical University of Denmark, 2800 Kongens Lyngby, Denmark, 5Institute for Bioinformatics, Center for Biotechnology, Bielefeld University, 33594 Bielefeld, Germany, 6School of Computer Science, The University of Manchester, Manchester, M13 9PL, UK and 7European Bioinformatics Institute, EMBL, Wellcome Trust Genome Campus, Hinxton, Cambridge, CB10 1SD, UK","institution_ids":["https://openalex.org/I4432739","https://openalex.org/I4210102807","https://openalex.org/I96673099","https://openalex.org/I1303153112","https://openalex.org/I100532134","https://openalex.org/I1294671590"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5073098703","display_name":"Prabakar Venkataraman","orcid":null},"institutions":[{"id":"https://openalex.org/I100532134","display_name":"Universit\u00e9 Claude Bernard Lyon 1","ror":"https://ror.org/029brtt94","country_code":"FR","type":"education","lineage":["https://openalex.org/I100532134","https://openalex.org/I203339264"]},{"id":"https://openalex.org/I1294671590","display_name":"Centre National de la Recherche Scientifique","ror":"https://ror.org/02feahw73","country_code":"FR","type":"government","lineage":["https://openalex.org/I1294671590"]},{"id":"https://openalex.org/I1303153112","display_name":"European Bioinformatics Institute","ror":"https://ror.org/02catss52","country_code":"GB","type":"facility","lineage":["https://openalex.org/I1303153112","https://openalex.org/I4210138560"]},{"id":"https://openalex.org/I4210102807","display_name":"Uni Research (Norway)","ror":"https://ror.org/016tr2j79","country_code":"NO","type":"company","lineage":["https://openalex.org/I4210102807"]},{"id":"https://openalex.org/I4432739","display_name":"University of Bergen","ror":"https://ror.org/03zga2b32","country_code":"NO","type":"education","lineage":["https://openalex.org/I4432739"]},{"id":"https://openalex.org/I96673099","display_name":"Technical University of Denmark","ror":"https://ror.org/04qtj9h94","country_code":"DK","type":"education","lineage":["https://openalex.org/I96673099"]}],"countries":["DK","FR","GB","NO"],"is_corresponding":false,"raw_author_name":"Prabakar Venkataraman","raw_affiliation_strings":["1 Computational Biology Unit, Bergen Center for Computational Science, Uni Research, 5008 Bergen, Norway, 2Department of Informatics, University of Bergen, 5008 Bergen, Norway, 3Universit\u00e9 Lyon 1; CNRS, UMR 5086; IBCP, Institut de Biologie et Chimie des Prot\u00e9ines, 69367 Lyon Cedex 07, France, 4Center for Biological Sequence Analysis, Department of Systems Biology, Technical University of Denmark, 2800 Kongens Lyngby, Denmark, 5Institute for Bioinformatics, Center for Biotechnology, Bielefeld University, 33594 Bielefeld, Germany, 6School of Computer Science, The University of Manchester, Manchester, M13 9PL, UK and 7European Bioinformatics Institute, EMBL, Wellcome Trust Genome Campus, Hinxton, Cambridge, CB10 1SD, UK"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"1 Computational Biology Unit, Bergen Center for Computational Science, Uni Research, 5008 Bergen, Norway, 2Department of Informatics, University of Bergen, 5008 Bergen, Norway, 3Universit\u00e9 Lyon 1; CNRS, UMR 5086; IBCP, Institut de Biologie et Chimie des Prot\u00e9ines, 69367 Lyon Cedex 07, France, 4Center for Biological Sequence Analysis, Department of Systems Biology, Technical University of Denmark, 2800 Kongens Lyngby, Denmark, 5Institute for Bioinformatics, Center for Biotechnology, Bielefeld University, 33594 Bielefeld, Germany, 6School of Computer Science, The University of Manchester, Manchester, M13 9PL, UK and 7European Bioinformatics Institute, EMBL, Wellcome Trust Genome Campus, Hinxton, Cambridge, CB10 1SD, UK","institution_ids":["https://openalex.org/I4432739","https://openalex.org/I4210102807","https://openalex.org/I96673099","https://openalex.org/I1303153112","https://openalex.org/I100532134","https://openalex.org/I1294671590"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5081272754","display_name":"Steve Pettifer","orcid":"https://orcid.org/0000-0002-1809-5621"},"institutions":[{"id":"https://openalex.org/I100532134","display_name":"Universit\u00e9 Claude Bernard Lyon 1","ror":"https://ror.org/029brtt94","country_code":"FR","type":"education","lineage":["https://openalex.org/I100532134","https://openalex.org/I203339264"]},{"id":"https://openalex.org/I1294671590","display_name":"Centre National de la Recherche Scientifique","ror":"https://ror.org/02feahw73","country_code":"FR","type":"government","lineage":["https://openalex.org/I1294671590"]},{"id":"https://openalex.org/I1303153112","display_name":"European Bioinformatics Institute","ror":"https://ror.org/02catss52","country_code":"GB","type":"facility","lineage":["https://openalex.org/I1303153112","https://openalex.org/I4210138560"]},{"id":"https://openalex.org/I4210102807","display_name":"Uni Research (Norway)","ror":"https://ror.org/016tr2j79","country_code":"NO","type":"company","lineage":["https://openalex.org/I4210102807"]},{"id":"https://openalex.org/I4432739","display_name":"University of Bergen","ror":"https://ror.org/03zga2b32","country_code":"NO","type":"education","lineage":["https://openalex.org/I4432739"]},{"id":"https://openalex.org/I96673099","display_name":"Technical University of Denmark","ror":"https://ror.org/04qtj9h94","country_code":"DK","type":"education","lineage":["https://openalex.org/I96673099"]}],"countries":["DK","FR","GB","NO"],"is_corresponding":false,"raw_author_name":"Steve Pettifer","raw_affiliation_strings":["1 Computational Biology Unit, Bergen Center for Computational Science, Uni Research, 5008 Bergen, Norway, 2Department of Informatics, University of Bergen, 5008 Bergen, Norway, 3Universit\u00e9 Lyon 1; CNRS, UMR 5086; IBCP, Institut de Biologie et Chimie des Prot\u00e9ines, 69367 Lyon Cedex 07, France, 4Center for Biological Sequence Analysis, Department of Systems Biology, Technical University of Denmark, 2800 Kongens Lyngby, Denmark, 5Institute for Bioinformatics, Center for Biotechnology, Bielefeld University, 33594 Bielefeld, Germany, 6School of Computer Science, The University of Manchester, Manchester, M13 9PL, UK and 7European Bioinformatics Institute, EMBL, Wellcome Trust Genome Campus, Hinxton, Cambridge, CB10 1SD, UK"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"1 Computational Biology Unit, Bergen Center for Computational Science, Uni Research, 5008 Bergen, Norway, 2Department of Informatics, University of Bergen, 5008 Bergen, Norway, 3Universit\u00e9 Lyon 1; CNRS, UMR 5086; IBCP, Institut de Biologie et Chimie des Prot\u00e9ines, 69367 Lyon Cedex 07, France, 4Center for Biological Sequence Analysis, Department of Systems Biology, Technical University of Denmark, 2800 Kongens Lyngby, Denmark, 5Institute for Bioinformatics, Center for Biotechnology, Bielefeld University, 33594 Bielefeld, Germany, 6School of Computer Science, The University of Manchester, Manchester, M13 9PL, UK and 7European Bioinformatics Institute, EMBL, Wellcome Trust Genome Campus, Hinxton, Cambridge, CB10 1SD, UK","institution_ids":["https://openalex.org/I4432739","https://openalex.org/I4210102807","https://openalex.org/I96673099","https://openalex.org/I1303153112","https://openalex.org/I100532134","https://openalex.org/I1294671590"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5108499417","display_name":"Jan Christian Bryne","orcid":null},"institutions":[{"id":"https://openalex.org/I100532134","display_name":"Universit\u00e9 Claude Bernard Lyon 1","ror":"https://ror.org/029brtt94","country_code":"FR","type":"education","lineage":["https://openalex.org/I100532134","https://openalex.org/I203339264"]},{"id":"https://openalex.org/I1294671590","display_name":"Centre National de la Recherche Scientifique","ror":"https://ror.org/02feahw73","country_code":"FR","type":"government","lineage":["https://openalex.org/I1294671590"]},{"id":"https://openalex.org/I1303153112","display_name":"European Bioinformatics Institute","ror":"https://ror.org/02catss52","country_code":"GB","type":"facility","lineage":["https://openalex.org/I1303153112","https://openalex.org/I4210138560"]},{"id":"https://openalex.org/I4210102807","display_name":"Uni Research (Norway)","ror":"https://ror.org/016tr2j79","country_code":"NO","type":"company","lineage":["https://openalex.org/I4210102807"]},{"id":"https://openalex.org/I4432739","display_name":"University of Bergen","ror":"https://ror.org/03zga2b32","country_code":"NO","type":"education","lineage":["https://openalex.org/I4432739"]},{"id":"https://openalex.org/I96673099","display_name":"Technical University of Denmark","ror":"https://ror.org/04qtj9h94","country_code":"DK","type":"education","lineage":["https://openalex.org/I96673099"]}],"countries":["DK","FR","GB","NO"],"is_corresponding":false,"raw_author_name":"Jan Christian Bryne","raw_affiliation_strings":["1 Computational Biology Unit, Bergen Center for Computational Science, Uni Research, 5008 Bergen, Norway, 2Department of Informatics, University of Bergen, 5008 Bergen, Norway, 3Universit\u00e9 Lyon 1; CNRS, UMR 5086; IBCP, Institut de Biologie et Chimie des Prot\u00e9ines, 69367 Lyon Cedex 07, France, 4Center for Biological Sequence Analysis, Department of Systems Biology, Technical University of Denmark, 2800 Kongens Lyngby, Denmark, 5Institute for Bioinformatics, Center for Biotechnology, Bielefeld University, 33594 Bielefeld, Germany, 6School of Computer Science, The University of Manchester, Manchester, M13 9PL, UK and 7European Bioinformatics Institute, EMBL, Wellcome Trust Genome Campus, Hinxton, Cambridge, CB10 1SD, UK"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"1 Computational Biology Unit, Bergen Center for Computational Science, Uni Research, 5008 Bergen, Norway, 2Department of Informatics, University of Bergen, 5008 Bergen, Norway, 3Universit\u00e9 Lyon 1; CNRS, UMR 5086; IBCP, Institut de Biologie et Chimie des Prot\u00e9ines, 69367 Lyon Cedex 07, France, 4Center for Biological Sequence Analysis, Department of Systems Biology, Technical University of Denmark, 2800 Kongens Lyngby, Denmark, 5Institute for Bioinformatics, Center for Biotechnology, Bielefeld University, 33594 Bielefeld, Germany, 6School of Computer Science, The University of Manchester, Manchester, M13 9PL, UK and 7European Bioinformatics Institute, EMBL, Wellcome Trust Genome Campus, Hinxton, Cambridge, CB10 1SD, UK","institution_ids":["https://openalex.org/I4432739","https://openalex.org/I4210102807","https://openalex.org/I96673099","https://openalex.org/I1303153112","https://openalex.org/I100532134","https://openalex.org/I1294671590"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5080837511","display_name":"Jon Ison","orcid":"https://orcid.org/0000-0001-6666-1520"},"institutions":[{"id":"https://openalex.org/I100532134","display_name":"Universit\u00e9 Claude Bernard Lyon 1","ror":"https://ror.org/029brtt94","country_code":"FR","type":"education","lineage":["https://openalex.org/I100532134","https://openalex.org/I203339264"]},{"id":"https://openalex.org/I1294671590","display_name":"Centre National de la Recherche Scientifique","ror":"https://ror.org/02feahw73","country_code":"FR","type":"government","lineage":["https://openalex.org/I1294671590"]},{"id":"https://openalex.org/I1303153112","display_name":"European Bioinformatics Institute","ror":"https://ror.org/02catss52","country_code":"GB","type":"facility","lineage":["https://openalex.org/I1303153112","https://openalex.org/I4210138560"]},{"id":"https://openalex.org/I4210102807","display_name":"Uni Research (Norway)","ror":"https://ror.org/016tr2j79","country_code":"NO","type":"company","lineage":["https://openalex.org/I4210102807"]},{"id":"https://openalex.org/I4432739","display_name":"University of Bergen","ror":"https://ror.org/03zga2b32","country_code":"NO","type":"education","lineage":["https://openalex.org/I4432739"]},{"id":"https://openalex.org/I96673099","display_name":"Technical University of Denmark","ror":"https://ror.org/04qtj9h94","country_code":"DK","type":"education","lineage":["https://openalex.org/I96673099"]}],"countries":["DK","FR","GB","NO"],"is_corresponding":false,"raw_author_name":"Jon Ison","raw_affiliation_strings":["1 Computational Biology Unit, Bergen Center for Computational Science, Uni Research, 5008 Bergen, Norway, 2Department of Informatics, University of Bergen, 5008 Bergen, Norway, 3Universit\u00e9 Lyon 1; CNRS, UMR 5086; IBCP, Institut de Biologie et Chimie des Prot\u00e9ines, 69367 Lyon Cedex 07, France, 4Center for Biological Sequence Analysis, Department of Systems Biology, Technical University of Denmark, 2800 Kongens Lyngby, Denmark, 5Institute for Bioinformatics, Center for Biotechnology, Bielefeld University, 33594 Bielefeld, Germany, 6School of Computer Science, The University of Manchester, Manchester, M13 9PL, UK and 7European Bioinformatics Institute, EMBL, Wellcome Trust Genome Campus, Hinxton, Cambridge, CB10 1SD, UK"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"1 Computational Biology Unit, Bergen Center for Computational Science, Uni Research, 5008 Bergen, Norway, 2Department of Informatics, University of Bergen, 5008 Bergen, Norway, 3Universit\u00e9 Lyon 1; CNRS, UMR 5086; IBCP, Institut de Biologie et Chimie des Prot\u00e9ines, 69367 Lyon Cedex 07, France, 4Center for Biological Sequence Analysis, Department of Systems Biology, Technical University of Denmark, 2800 Kongens Lyngby, Denmark, 5Institute for Bioinformatics, Center for Biotechnology, Bielefeld University, 33594 Bielefeld, Germany, 6School of Computer Science, The University of Manchester, Manchester, M13 9PL, UK and 7European Bioinformatics Institute, EMBL, Wellcome Trust Genome Campus, Hinxton, Cambridge, CB10 1SD, UK","institution_ids":["https://openalex.org/I4432739","https://openalex.org/I4210102807","https://openalex.org/I96673099","https://openalex.org/I1303153112","https://openalex.org/I100532134","https://openalex.org/I1294671590"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5108831913","display_name":"Christophe Blanchet","orcid":null},"institutions":[{"id":"https://openalex.org/I100532134","display_name":"Universit\u00e9 Claude Bernard Lyon 1","ror":"https://ror.org/029brtt94","country_code":"FR","type":"education","lineage":["https://openalex.org/I100532134","https://openalex.org/I203339264"]},{"id":"https://openalex.org/I1294671590","display_name":"Centre National de la Recherche Scientifique","ror":"https://ror.org/02feahw73","country_code":"FR","type":"government","lineage":["https://openalex.org/I1294671590"]},{"id":"https://openalex.org/I1303153112","display_name":"European Bioinformatics Institute","ror":"https://ror.org/02catss52","country_code":"GB","type":"facility","lineage":["https://openalex.org/I1303153112","https://openalex.org/I4210138560"]},{"id":"https://openalex.org/I4210102807","display_name":"Uni Research (Norway)","ror":"https://ror.org/016tr2j79","country_code":"NO","type":"company","lineage":["https://openalex.org/I4210102807"]},{"id":"https://openalex.org/I4432739","display_name":"University of Bergen","ror":"https://ror.org/03zga2b32","country_code":"NO","type":"education","lineage":["https://openalex.org/I4432739"]},{"id":"https://openalex.org/I96673099","display_name":"Technical University of Denmark","ror":"https://ror.org/04qtj9h94","country_code":"DK","type":"education","lineage":["https://openalex.org/I96673099"]}],"countries":["DK","FR","GB","NO"],"is_corresponding":false,"raw_author_name":"Christophe Blanchet","raw_affiliation_strings":["1 Computational Biology Unit, Bergen Center for Computational Science, Uni Research, 5008 Bergen, Norway, 2Department of Informatics, University of Bergen, 5008 Bergen, Norway, 3Universit\u00e9 Lyon 1; CNRS, UMR 5086; IBCP, Institut de Biologie et Chimie des Prot\u00e9ines, 69367 Lyon Cedex 07, France, 4Center for Biological Sequence Analysis, Department of Systems Biology, Technical University of Denmark, 2800 Kongens Lyngby, Denmark, 5Institute for Bioinformatics, Center for Biotechnology, Bielefeld University, 33594 Bielefeld, Germany, 6School of Computer Science, The University of Manchester, Manchester, M13 9PL, UK and 7European Bioinformatics Institute, EMBL, Wellcome Trust Genome Campus, Hinxton, Cambridge, CB10 1SD, UK"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"1 Computational Biology Unit, Bergen Center for Computational Science, Uni Research, 5008 Bergen, Norway, 2Department of Informatics, University of Bergen, 5008 Bergen, Norway, 3Universit\u00e9 Lyon 1; CNRS, UMR 5086; IBCP, Institut de Biologie et Chimie des Prot\u00e9ines, 69367 Lyon Cedex 07, France, 4Center for Biological Sequence Analysis, Department of Systems Biology, Technical University of Denmark, 2800 Kongens Lyngby, Denmark, 5Institute for Bioinformatics, Center for Biotechnology, Bielefeld University, 33594 Bielefeld, Germany, 6School of Computer Science, The University of Manchester, Manchester, M13 9PL, UK and 7European Bioinformatics Institute, EMBL, Wellcome Trust Genome Campus, Hinxton, Cambridge, CB10 1SD, UK","institution_ids":["https://openalex.org/I4432739","https://openalex.org/I4210102807","https://openalex.org/I96673099","https://openalex.org/I1303153112","https://openalex.org/I100532134","https://openalex.org/I1294671590"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5016909243","display_name":"Kristoffer Rapacki","orcid":null},"institutions":[{"id":"https://openalex.org/I100532134","display_name":"Universit\u00e9 Claude Bernard Lyon 1","ror":"https://ror.org/029brtt94","country_code":"FR","type":"education","lineage":["https://openalex.org/I100532134","https://openalex.org/I203339264"]},{"id":"https://openalex.org/I1294671590","display_name":"Centre National de la Recherche Scientifique","ror":"https://ror.org/02feahw73","country_code":"FR","type":"government","lineage":["https://openalex.org/I1294671590"]},{"id":"https://openalex.org/I1303153112","display_name":"European Bioinformatics Institute","ror":"https://ror.org/02catss52","country_code":"GB","type":"facility","lineage":["https://openalex.org/I1303153112","https://openalex.org/I4210138560"]},{"id":"https://openalex.org/I4210102807","display_name":"Uni Research (Norway)","ror":"https://ror.org/016tr2j79","country_code":"NO","type":"company","lineage":["https://openalex.org/I4210102807"]},{"id":"https://openalex.org/I4432739","display_name":"University of Bergen","ror":"https://ror.org/03zga2b32","country_code":"NO","type":"education","lineage":["https://openalex.org/I4432739"]},{"id":"https://openalex.org/I96673099","display_name":"Technical University of Denmark","ror":"https://ror.org/04qtj9h94","country_code":"DK","type":"education","lineage":["https://openalex.org/I96673099"]}],"countries":["DK","FR","GB","NO"],"is_corresponding":false,"raw_author_name":"Kristoffer Rapacki","raw_affiliation_strings":["1 Computational Biology Unit, Bergen Center for Computational Science, Uni Research, 5008 Bergen, Norway, 2Department of Informatics, University of Bergen, 5008 Bergen, Norway, 3Universit\u00e9 Lyon 1; CNRS, UMR 5086; IBCP, Institut de Biologie et Chimie des Prot\u00e9ines, 69367 Lyon Cedex 07, France, 4Center for Biological Sequence Analysis, Department of Systems Biology, Technical University of Denmark, 2800 Kongens Lyngby, Denmark, 5Institute for Bioinformatics, Center for Biotechnology, Bielefeld University, 33594 Bielefeld, Germany, 6School of Computer Science, The University of Manchester, Manchester, M13 9PL, UK and 7European Bioinformatics Institute, EMBL, Wellcome Trust Genome Campus, Hinxton, Cambridge, CB10 1SD, UK"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"1 Computational Biology Unit, Bergen Center for Computational Science, Uni Research, 5008 Bergen, Norway, 2Department of Informatics, University of Bergen, 5008 Bergen, Norway, 3Universit\u00e9 Lyon 1; CNRS, UMR 5086; IBCP, Institut de Biologie et Chimie des Prot\u00e9ines, 69367 Lyon Cedex 07, France, 4Center for Biological Sequence Analysis, Department of Systems Biology, Technical University of Denmark, 2800 Kongens Lyngby, Denmark, 5Institute for Bioinformatics, Center for Biotechnology, Bielefeld University, 33594 Bielefeld, Germany, 6School of Computer Science, The University of Manchester, Manchester, M13 9PL, UK and 7European Bioinformatics Institute, EMBL, Wellcome Trust Genome Campus, Hinxton, Cambridge, CB10 1SD, UK","institution_ids":["https://openalex.org/I4432739","https://openalex.org/I4210102807","https://openalex.org/I96673099","https://openalex.org/I1303153112","https://openalex.org/I100532134","https://openalex.org/I1294671590"]}]},{"author_position":"last","author":{"id":"https://openalex.org/A5012964587","display_name":"Inge Jonassen","orcid":"https://orcid.org/0000-0003-4110-0748"},"institutions":[{"id":"https://openalex.org/I100532134","display_name":"Universit\u00e9 Claude Bernard Lyon 1","ror":"https://ror.org/029brtt94","country_code":"FR","type":"education","lineage":["https://openalex.org/I100532134","https://openalex.org/I203339264"]},{"id":"https://openalex.org/I1294671590","display_name":"Centre National de la Recherche Scientifique","ror":"https://ror.org/02feahw73","country_code":"FR","type":"government","lineage":["https://openalex.org/I1294671590"]},{"id":"https://openalex.org/I1303153112","display_name":"European Bioinformatics Institute","ror":"https://ror.org/02catss52","country_code":"GB","type":"facility","lineage":["https://openalex.org/I1303153112","https://openalex.org/I4210138560"]},{"id":"https://openalex.org/I4210102807","display_name":"Uni Research (Norway)","ror":"https://ror.org/016tr2j79","country_code":"NO","type":"company","lineage":["https://openalex.org/I4210102807"]},{"id":"https://openalex.org/I4432739","display_name":"University of Bergen","ror":"https://ror.org/03zga2b32","country_code":"NO","type":"education","lineage":["https://openalex.org/I4432739"]},{"id":"https://openalex.org/I96673099","display_name":"Technical University of Denmark","ror":"https://ror.org/04qtj9h94","country_code":"DK","type":"education","lineage":["https://openalex.org/I96673099"]}],"countries":["DK","FR","GB","NO"],"is_corresponding":false,"raw_author_name":"Inge Jonassen","raw_affiliation_strings":["1 Computational Biology Unit, Bergen Center for Computational Science, Uni Research, 5008 Bergen, Norway, 2Department of Informatics, University of Bergen, 5008 Bergen, Norway, 3Universit\u00e9 Lyon 1; CNRS, UMR 5086; IBCP, Institut de Biologie et Chimie des Prot\u00e9ines, 69367 Lyon Cedex 07, France, 4Center for Biological Sequence Analysis, Department of Systems Biology, Technical University of Denmark, 2800 Kongens Lyngby, Denmark, 5Institute for Bioinformatics, Center for Biotechnology, Bielefeld University, 33594 Bielefeld, Germany, 6School of Computer Science, The University of Manchester, Manchester, M13 9PL, UK and 7European Bioinformatics Institute, EMBL, Wellcome Trust Genome Campus, Hinxton, Cambridge, CB10 1SD, UK"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"1 Computational Biology Unit, Bergen Center for Computational Science, Uni Research, 5008 Bergen, Norway, 2Department of Informatics, University of Bergen, 5008 Bergen, Norway, 3Universit\u00e9 Lyon 1; CNRS, UMR 5086; IBCP, Institut de Biologie et Chimie des Prot\u00e9ines, 69367 Lyon Cedex 07, France, 4Center for Biological Sequence Analysis, Department of Systems Biology, Technical University of Denmark, 2800 Kongens Lyngby, Denmark, 5Institute for Bioinformatics, Center for Biotechnology, Bielefeld University, 33594 Bielefeld, Germany, 6School of Computer Science, The University of Manchester, Manchester, M13 9PL, UK and 7European Bioinformatics Institute, EMBL, Wellcome Trust Genome Campus, Hinxton, Cambridge, CB10 1SD, UK","institution_ids":["https://openalex.org/I4432739","https://openalex.org/I4210102807","https://openalex.org/I96673099","https://openalex.org/I1303153112","https://openalex.org/I100532134","https://openalex.org/I1294671590"]}]}],"institutions":[],"countries_distinct_count":4,"institutions_distinct_count":12,"corresponding_author_ids":["https://openalex.org/A5007975575"],"corresponding_institution_ids":["https://openalex.org/I100532134","https://openalex.org/I1294671590","https://openalex.org/I1303153112","https://openalex.org/I4210102807","https://openalex.org/I4432739","https://openalex.org/I96673099"],"apc_list":{"value":3618,"currency":"USD","value_usd":3618},"apc_paid":{"value":3618,"currency":"USD","value_usd":3618},"fwci":6.4409,"has_fulltext":false,"cited_by_count":24,"citation_normalized_percentile":{"value":0.96256317,"is_in_top_1_percent":false,"is_in_top_10_percent":true},"cited_by_percentile_year":{"min":90,"max":99},"biblio":{"volume":"26","issue":"18","first_page":"i540","last_page":"i546"},"is_retracted":false,"is_paratext":false,"is_xpac":false,"primary_topic":{"id":"https://openalex.org/T11986","display_name":"Scientific Computing and Data Management","score":0.35010001063346863,"subfield":{"id":"https://openalex.org/subfields/1802","display_name":"Information Systems and Management"},"field":{"id":"https://openalex.org/fields/18","display_name":"Decision Sciences"},"domain":{"id":"https://openalex.org/domains/2","display_name":"Social Sciences"}},"topics":[{"id":"https://openalex.org/T11986","display_name":"Scientific Computing and Data Management","score":0.35010001063346863,"subfield":{"id":"https://openalex.org/subfields/1802","display_name":"Information Systems and Management"},"field":{"id":"https://openalex.org/fields/18","display_name":"Decision Sciences"},"domain":{"id":"https://openalex.org/domains/2","display_name":"Social Sciences"}},{"id":"https://openalex.org/T13937","display_name":"Genetics, Bioinformatics, and Biomedical Research","score":0.22779999673366547,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},{"id":"https://openalex.org/T11710","display_name":"Biomedical Text Mining and Ontologies","score":0.17820000648498535,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}}],"keywords":[{"id":"https://openalex.org/keywords/computer-science","display_name":"Computer science","score":0.8352549076080322},{"id":"https://openalex.org/keywords/world-wide-web","display_name":"World Wide Web","score":0.5964730978012085},{"id":"https://openalex.org/keywords/xml","display_name":"XML","score":0.5654407739639282},{"id":"https://openalex.org/keywords/web-service","display_name":"Web service","score":0.5493478775024414},{"id":"https://openalex.org/keywords/workflow","display_name":"Workflow","score":0.5141758918762207},{"id":"https://openalex.org/keywords/application-programming-interface","display_name":"Application programming interface","score":0.48804202675819397},{"id":"https://openalex.org/keywords/interoperability","display_name":"Interoperability","score":0.4365687966346741},{"id":"https://openalex.org/keywords/data-exchange","display_name":"Data exchange","score":0.4360276758670807},{"id":"https://openalex.org/keywords/documentation","display_name":"Documentation","score":0.4243777394294739},{"id":"https://openalex.org/keywords/information-retrieval","display_name":"Information retrieval","score":0.3415951728820801},{"id":"https://openalex.org/keywords/database","display_name":"Database","score":0.3286847174167633},{"id":"https://openalex.org/keywords/programming-language","display_name":"Programming language","score":0.13696667551994324}],"concepts":[{"id":"https://openalex.org/C41008148","wikidata":"https://www.wikidata.org/wiki/Q21198","display_name":"Computer science","level":0,"score":0.8352549076080322},{"id":"https://openalex.org/C136764020","wikidata":"https://www.wikidata.org/wiki/Q466","display_name":"World Wide Web","level":1,"score":0.5964730978012085},{"id":"https://openalex.org/C8797682","wikidata":"https://www.wikidata.org/wiki/Q2115","display_name":"XML","level":2,"score":0.5654407739639282},{"id":"https://openalex.org/C35578498","wikidata":"https://www.wikidata.org/wiki/Q193424","display_name":"Web service","level":2,"score":0.5493478775024414},{"id":"https://openalex.org/C177212765","wikidata":"https://www.wikidata.org/wiki/Q627335","display_name":"Workflow","level":2,"score":0.5141758918762207},{"id":"https://openalex.org/C99613125","wikidata":"https://www.wikidata.org/wiki/Q165194","display_name":"Application programming interface","level":2,"score":0.48804202675819397},{"id":"https://openalex.org/C20136886","wikidata":"https://www.wikidata.org/wiki/Q749647","display_name":"Interoperability","level":2,"score":0.4365687966346741},{"id":"https://openalex.org/C15845906","wikidata":"https://www.wikidata.org/wiki/Q1172338","display_name":"Data exchange","level":2,"score":0.4360276758670807},{"id":"https://openalex.org/C56666940","wikidata":"https://www.wikidata.org/wiki/Q788790","display_name":"Documentation","level":2,"score":0.4243777394294739},{"id":"https://openalex.org/C23123220","wikidata":"https://www.wikidata.org/wiki/Q816826","display_name":"Information retrieval","level":1,"score":0.3415951728820801},{"id":"https://openalex.org/C77088390","wikidata":"https://www.wikidata.org/wiki/Q8513","display_name":"Database","level":1,"score":0.3286847174167633},{"id":"https://openalex.org/C199360897","wikidata":"https://www.wikidata.org/wiki/Q9143","display_name":"Programming language","level":1,"score":0.13696667551994324}],"mesh":[{"descriptor_ui":"D000595","descriptor_name":"Amino Acid Sequence","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D000595","descriptor_name":"Amino Acid Sequence","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D000595","descriptor_name":"Amino Acid Sequence","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D008969","descriptor_name":"Molecular Sequence Data","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D008969","descriptor_name":"Molecular Sequence Data","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D008969","descriptor_name":"Molecular Sequence Data","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D011381","descriptor_name":"Programming Languages","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D011381","descriptor_name":"Programming Languages","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D011381","descriptor_name":"Programming Languages","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D012660","descriptor_name":"Semantics","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D012660","descriptor_name":"Semantics","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D012660","descriptor_name":"Semantics","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D012984","descriptor_name":"Software","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D012984","descriptor_name":"Software","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D012984","descriptor_name":"Software","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D016247","descriptor_name":"Information Storage and Retrieval","qualifier_ui":"Q000592","qualifier_name":"standards","is_major_topic":true},{"descriptor_ui":"D016247","descriptor_name":"Information Storage and Retrieval","qualifier_ui":"Q000592","qualifier_name":"standards","is_major_topic":true},{"descriptor_ui":"D016247","descriptor_name":"Information Storage and Retrieval","qualifier_ui":"Q000592","qualifier_name":"standards","is_major_topic":true},{"descriptor_ui":"D019295","descriptor_name":"Computational Biology","qualifier_ui":"Q000379","qualifier_name":"methods","is_major_topic":false},{"descriptor_ui":"D019295","descriptor_name":"Computational Biology","qualifier_ui":"Q000379","qualifier_name":"methods","is_major_topic":false},{"descriptor_ui":"D019295","descriptor_name":"Computational Biology","qualifier_ui":"Q000379","qualifier_name":"methods","is_major_topic":false},{"descriptor_ui":"D020407","descriptor_name":"Internet","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D020407","descriptor_name":"Internet","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D020407","descriptor_name":"Internet","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D057188","descriptor_name":"Workflow","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D057188","descriptor_name":"Workflow","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D057188","descriptor_name":"Workflow","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false}],"locations_count":8,"locations":[{"id":"doi:10.1093/bioinformatics/btq391","is_oa":true,"landing_page_url":"https://doi.org/10.1093/bioinformatics/btq391","pdf_url":"https://academic.oup.com/bioinformatics/article-pdf/26/18/i540/541290/btq391.pdf","source":{"id":"https://openalex.org/S52395412","display_name":"Bioinformatics","issn_l":"1367-4803","issn":["1367-4803","1367-4811"],"is_oa":false,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310311648","host_organization_name":"Oxford University Press","host_organization_lineage":["https://openalex.org/P4310311648","https://openalex.org/P4310311647"],"host_organization_lineage_names":["Oxford University Press","University of Oxford"],"type":"journal"},"license":"cc-by-nc","license_id":"https://openalex.org/licenses/cc-by-nc","version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Bioinformatics","raw_type":"journal-article"},{"id":"pmid:20823319","is_oa":false,"landing_page_url":"https://pubmed.ncbi.nlm.nih.gov/20823319","pdf_url":null,"source":{"id":"https://openalex.org/S4306525036","display_name":"PubMed","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I1299303238","host_organization_name":"National Institutes of Health","host_organization_lineage":["https://openalex.org/I1299303238"],"host_organization_lineage_names":[],"type":"repository"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Bioinformatics (Oxford, England)","raw_type":null},{"id":"pmh:oai:pure.atira.dk:openaire_cris_publications/62a459d5-958e-4ba3-b582-ba2b6a7d64bf","is_oa":false,"landing_page_url":"https://research.manchester.ac.uk/en/publications/62a459d5-958e-4ba3-b582-ba2b6a7d64bf","pdf_url":null,"source":{"id":"https://openalex.org/S4306400662","display_name":"Research Explorer (The University of Manchester)","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I28407311","host_organization_name":"University of Manchester","host_organization_lineage":["https://openalex.org/I28407311"],"host_organization_lineage_names":[],"type":"repository"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Kala\u0161, M, Puntervoll, P, Joseph, A, Barta\u0161evi\u010diute, E, T\u00f6pfer, A, Venkataraman, P, Pettifer, S, Bryne, J C, Ison, J, Blanchet, C, Rapacki, K & Jonassen, I 2010, 'BioXSD: The common data-exchange format for everyday bioinformatics web services', Bioinformatics, vol. 26, no. 18, btq391, pp. 540-546. https://doi.org/10.1093/bioinformatics/btq391","raw_type":"info:eu-repo/semantics/publishedVersion"},{"id":"pmh:oai:pure.atira.dk:openaire_cris_publications/84e925c6-4df4-416f-887f-d844cddb1be0","is_oa":false,"landing_page_url":"https://research.manchester.ac.uk/en/publications/84e925c6-4df4-416f-887f-d844cddb1be0","pdf_url":null,"source":{"id":"https://openalex.org/S4306400662","display_name":"Research Explorer (The University of Manchester)","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I28407311","host_organization_name":"University of Manchester","host_organization_lineage":["https://openalex.org/I28407311"],"host_organization_lineage_names":[],"type":"repository"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Kala\u0161, M, Puntervoll, P, Joseph, A, Barta\u0161evi\u010diute, E, T\u00f6pfer, A, Venkataraman, P, Pettifer, S, Bryne, J C, Ison, J, Blanchet, C, Rapacki, K & Jonassen, I 2010, BioXSD: The common data-exchange format for everyday bioinformatics web services. in Bioinformatics|Bioinformatics. vol. 26, pp. 540-546. https://doi.org/10.1093/bioinformatics/btq391","raw_type":"info:eu-repo/semantics/publishedVersion"},{"id":"pmh:oai:bora.uib.no:1956/10660","is_oa":true,"landing_page_url":"http://hdl.handle.net/1956/10660","pdf_url":null,"source":{"id":"https://openalex.org/S4306400085","display_name":"Bergen Open Research Archive (BORA) (University of Bergen)","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I4432739","host_organization_name":"University of Bergen","host_organization_lineage":["https://openalex.org/I4432739"],"host_organization_lineage_names":[],"type":"repository"},"license":"cc-by-nc","license_id":"https://openalex.org/licenses/cc-by-nc","version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":"","raw_type":"info:eu-repo/semantics/other"},{"id":"pmh:oai:pubmedcentral.nih.gov:2935419","is_oa":true,"landing_page_url":"https://www.ncbi.nlm.nih.gov/pmc/articles/2935419","pdf_url":null,"source":{"id":"https://openalex.org/S2764455111","display_name":"PubMed Central","issn_l":null,"issn":null,"is_oa":true,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I1299303238","host_organization_name":"National Institutes of Health","host_organization_lineage":["https://openalex.org/I1299303238"],"host_organization_lineage_names":[],"type":"repository"},"license":null,"license_id":null,"version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":"Bioinformatics","raw_type":"Text"},{"id":"pmh:oai:pure.atira.dk:publications/62a459d5-958e-4ba3-b582-ba2b6a7d64bf","is_oa":false,"landing_page_url":"https://www.research.manchester.ac.uk/portal/en/publications/bioxsd-the-common-dataexchange-format-for-everyday-bioinformatics-web-services(62a459d5-958e-4ba3-b582-ba2b6a7d64bf).html","pdf_url":null,"source":{"id":"https://openalex.org/S4306400662","display_name":"Research Explorer (The University of Manchester)","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I28407311","host_organization_name":"University of Manchester","host_organization_lineage":["https://openalex.org/I28407311"],"host_organization_lineage_names":[],"type":"repository"},"license":null,"license_id":null,"version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":"Kala\u0161, M, Puntervoll, P, Joseph, A, Barta\u0161evi\u010diute, E, T\u00f6pfer, A, Venkataraman, P, Pettifer, S, Bryne, J C, Ison, J, Blanchet, C, Rapacki, K & Jonassen, I 2010, 'BioXSD: The common data-exchange format for everyday bioinformatics web services', Bioinformatics, vol. 26, no. 18, btq391, pp. 540-546. https://doi.org/10.1093/bioinformatics/btq391","raw_type":"info:eu-repo/semantics/publishedVersion"},{"id":"pmh:oai:pure.atira.dk:publications/ffd035fc-c44f-4a78-9bb3-f11713cbb176","is_oa":false,"landing_page_url":"https://orbit.dtu.dk/en/publications/ffd035fc-c44f-4a78-9bb3-f11713cbb176","pdf_url":null,"source":{"id":"https://openalex.org/S4306400705","display_name":"Technical University of Denmark, DTU Orbit (Technical University of Denmark, DTU)","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I96673099","host_organization_name":"Technical University of Denmark","host_organization_lineage":["https://openalex.org/I96673099"],"host_organization_lineage_names":[],"type":"repository"},"license":null,"license_id":null,"version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":"Kalas , M , Puntervoll , P , Joseph , A , Bartaseviciute , E , Topfer , A , Venkataraman , P , Pettifer , S , Bryne , J C , Ison , J , Blanchet , C , Rapacki , K & Jonassen , I 2010 , ' BioXSD: the common data-exchange format for everyday bioinformatics web services ' , Bioinformatics , vol. 26 , no. 18 , pp. i540-i546 . https://doi.org/10.1093/bioinformatics/btq391","raw_type":"article"}],"best_oa_location":{"id":"doi:10.1093/bioinformatics/btq391","is_oa":true,"landing_page_url":"https://doi.org/10.1093/bioinformatics/btq391","pdf_url":"https://academic.oup.com/bioinformatics/article-pdf/26/18/i540/541290/btq391.pdf","source":{"id":"https://openalex.org/S52395412","display_name":"Bioinformatics","issn_l":"1367-4803","issn":["1367-4803","1367-4811"],"is_oa":false,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310311648","host_organization_name":"Oxford University Press","host_organization_lineage":["https://openalex.org/P4310311648","https://openalex.org/P4310311647"],"host_organization_lineage_names":["Oxford University Press","University of Oxford"],"type":"journal"},"license":"cc-by-nc","license_id":"https://openalex.org/licenses/cc-by-nc","version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Bioinformatics","raw_type":"journal-article"},"sustainable_development_goals":[{"score":0.4699999988079071,"id":"https://metadata.un.org/sdg/12","display_name":"Responsible consumption and production"}],"awards":[],"funders":[],"has_content":{"grobid_xml":false,"pdf":true},"content_urls":{"pdf":"https://content.openalex.org/works/W2127770193.pdf"},"referenced_works_count":29,"referenced_works":["https://openalex.org/W1486283310","https://openalex.org/W1491040459","https://openalex.org/W1528893134","https://openalex.org/W1974754433","https://openalex.org/W1996901532","https://openalex.org/W1996902131","https://openalex.org/W2006933206","https://openalex.org/W2015936607","https://openalex.org/W2040704692","https://openalex.org/W2054251921","https://openalex.org/W2055043387","https://openalex.org/W2072229457","https://openalex.org/W2100434585","https://openalex.org/W2103017472","https://openalex.org/W2106882534","https://openalex.org/W2108896751","https://openalex.org/W2120319799","https://openalex.org/W2123171788","https://openalex.org/W2132247062","https://openalex.org/W2137653635","https://openalex.org/W2138608730","https://openalex.org/W2144781426","https://openalex.org/W2150306348","https://openalex.org/W2150908245","https://openalex.org/W2159124857","https://openalex.org/W2162094394","https://openalex.org/W2772934464","https://openalex.org/W4211208250","https://openalex.org/W6631575564"],"related_works":["https://openalex.org/W3109801220","https://openalex.org/W2739449396","https://openalex.org/W4226114405","https://openalex.org/W2361266579","https://openalex.org/W2367669701","https://openalex.org/W2375904740","https://openalex.org/W2352293792","https://openalex.org/W2361478481","https://openalex.org/W2075484134","https://openalex.org/W2348779292"],"abstract_inverted_index":{"MOTIVATION:":[0],"The":[1,167,184],"world-wide":[2],"community":[3],"of":[4,13,32,42,50,106,191,208,217],"life":[5],"scientists":[6],"has":[7,65],"access":[8],"to":[9,99,109,154],"a":[10,69,84,104,120,148,215],"large":[11],"number":[12],"public":[14],"bioinformatics":[15,60,78],"databases":[16],"and":[17,22,27,30,88,97,115,118,130,157,162,212,214],"tools,":[18],"which":[19],"are":[20],"developed":[21,67],"deployed":[23],"using":[24],"diverse":[25],"technologies":[26],"designs.":[28],"More":[29],"more":[31],"the":[33,43,48,57,113,126,142,163,178,221],"resources":[34,44],"offer":[35],"programmatic":[36],"web-service":[37],"interface.":[38],"However,":[39],"efficient":[40],"use":[41,110],"is":[45,81,128,137,172],"hampered":[46],"by":[47,83,139],"lack":[49],"widely":[51],"used,":[52],"standard":[53],"data-exchange":[54],"formats":[55],"for":[56,71,76,91,135],"basic,":[58],"everyday":[59],"data":[61,192],"types.":[62],"RESULTS:":[63],"BioXSD":[64,80,111,136,152,168,194],"been":[66],"as":[68,112],"candidate":[70],"standard,":[72],"canonical":[73],"exchange":[74],"format":[75],"basic":[77],"data.":[79],"represented":[82],"dedicated":[85],"XML":[86,170],"Schema":[87,171],"defines":[89],"syntax":[90],"biological":[92],"sequences,":[93],"sequence":[94],"annotations,":[95],"alignments":[96],"references":[98],"resources.":[100],"We":[101,145],"have":[102],"adapted":[103],"set":[105],"web":[107,186,210],"services":[108,211],"input":[114],"output":[116],"format,":[117,195],"implemented":[119],"test-case":[121],"workflow.":[122],"This":[123],"demonstrates":[124],"that":[125],"approach":[127],"feasible":[129],"provides":[131],"smooth":[132],"interoperability.":[133],"Semantics":[134],"provided":[138],"annotation":[140],"with":[141,198],"EDAM":[143],"ontology.":[144],"discuss":[146],"in":[147,193,201],"separate":[149],"section":[150],"how":[151],"relates":[153],"other":[155],"initiatives":[156],"approaches,":[158],"including":[159],"existing":[160],"standards":[161],"Semantic":[164],"Web.":[165],"AVAILABILITY:":[166],"1.0":[169],"freely":[173],"available":[174],"at":[175],"http://www.bioxsd.org/BioXSD-1.0.xsd":[176],"under":[177],"Creative":[179],"Commons":[180],"BY-ND":[181],"3.0":[182],"license.":[183],"http://bioxsd.org":[185],"page":[187],"offers":[188],"documentation,":[189],"examples":[190],"example":[196],"workflows":[197],"source":[199],"codes":[200],"common":[202],"programming":[203],"languages,":[204],"an":[205],"updated":[206],"list":[207],"compatible":[209],"tools":[213],"repository":[216],"feature":[218],"requests":[219],"from":[220],"community.":[222]},"counts_by_year":[{"year":2018,"cited_by_count":1},{"year":2017,"cited_by_count":1},{"year":2016,"cited_by_count":1},{"year":2015,"cited_by_count":5},{"year":2014,"cited_by_count":7},{"year":2013,"cited_by_count":3},{"year":2012,"cited_by_count":2}],"updated_date":"2026-05-22T06:13:13.366637","created_date":"2025-10-10T00:00:00"}