{"id":"https://openalex.org/W2127770193","doi":"https://doi.org/10.1093/bioinformatics/btq391","title":"BioXSD: the common data-exchange format for everyday bioinformatics web services","display_name":"BioXSD: the common data-exchange format for everyday bioinformatics web services","publication_year":2010,"publication_date":"2010-09-04","ids":{"openalex":"https://openalex.org/W2127770193","doi":"https://doi.org/10.1093/bioinformatics/btq391","mag":"2127770193","pmid":"https://pubmed.ncbi.nlm.nih.gov/20823319"},"language":"en","primary_location":{"id":"doi:10.1093/bioinformatics/btq391","is_oa":true,"landing_page_url":"https://doi.org/10.1093/bioinformatics/btq391","pdf_url":"https://academic.oup.com/bioinformatics/article-pdf/26/18/i540/541290/btq391.pdf","source":{"id":"https://openalex.org/S52395412","display_name":"Bioinformatics","issn_l":"1367-4803","issn":["1367-4803","1367-4811"],"is_oa":false,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310311648","host_organization_name":"Oxford University Press","host_organization_lineage":["https://openalex.org/P4310311648","https://openalex.org/P4310311647"],"host_organization_lineage_names":["Oxford University Press","University of Oxford"],"type":"journal"},"license":"cc-by-nc","license_id":"https://openalex.org/licenses/cc-by-nc","version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Bioinformatics","raw_type":"journal-article"},"type":"article","indexed_in":["crossref","doaj","pubmed"],"open_access":{"is_oa":true,"oa_status":"hybrid","oa_url":"https://academic.oup.com/bioinformatics/article-pdf/26/18/i540/541290/btq391.pdf","any_repository_has_fulltext":true},"authorships":[{"author_position":"first","author":{"id":"https://openalex.org/A5007975575","display_name":"Mat\u00fa\u0161 Kala\u0161","orcid":"https://orcid.org/0000-0002-1509-4981"},"institutions":[{"id":"https://openalex.org/I1303153112","display_name":"European Bioinformatics Institute","ror":"https://ror.org/02catss52","country_code":"GB","type":"facility","lineage":["https://openalex.org/I1303153112","https://openalex.org/I4210138560"]},{"id":"https://openalex.org/I100532134","display_name":"Universit\u00e9 Claude Bernard Lyon 1","ror":"https://ror.org/029brtt94","country_code":"FR","type":"education","lineage":["https://openalex.org/I100532134","https://openalex.org/I203339264"]},{"id":"https://openalex.org/I96673099","display_name":"Technical University of Denmark","ror":"https://ror.org/04qtj9h94","country_code":"DK","type":"education","lineage":["https://openalex.org/I96673099"]},{"id":"https://openalex.org/I1294671590","display_name":"Centre National de la Recherche Scientifique","ror":"https://ror.org/02feahw73","country_code":"FR","type":"funder","lineage":["https://openalex.org/I1294671590"]},{"id":"https://openalex.org/I4210102807","display_name":"Uni Research (Norway)","ror":"https://ror.org/016tr2j79","country_code":"NO","type":"company","lineage":["https://openalex.org/I4210102807"]},{"id":"https://openalex.org/I4432739","display_name":"University of Bergen","ror":"https://ror.org/03zga2b32","country_code":"NO","type":"education","lineage":["https://openalex.org/I4432739"]}],"countries":["DK","FR","GB","NO"],"is_corresponding":true,"raw_author_name":"Mat\u00fa\u0161 Kala\u0161","raw_affiliation_strings":["1 Computational Biology Unit, Bergen Center for Computational Science, Uni Research, 5008 Bergen, Norway, 2Department of Informatics, University of Bergen, 5008 Bergen, Norway, 3Universit\u00e9 Lyon 1; CNRS, UMR 5086; IBCP, Institut de Biologie et Chimie des Prot\u00e9ines, 69367 Lyon Cedex 07, France, 4Center for Biological Sequence Analysis, Department of Systems Biology, Technical University of Denmark, 2800 Kongens Lyngby, Denmark, 5Institute for Bioinformatics, Center for Biotechnology, Bielefeld University, 33594 Bielefeld, Germany, 6School of Computer Science, The University of Manchester, Manchester, M13 9PL, UK and 7European Bioinformatics Institute, EMBL, Wellcome Trust Genome Campus, Hinxton, Cambridge, CB10 1SD, UK"],"affiliations":[{"raw_affiliation_string":"1 Computational Biology Unit, Bergen Center for Computational Science, Uni Research, 5008 Bergen, Norway, 2Department of Informatics, University of Bergen, 5008 Bergen, Norway, 3Universit\u00e9 Lyon 1; CNRS, UMR 5086; IBCP, Institut de Biologie et Chimie des Prot\u00e9ines, 69367 Lyon Cedex 07, France, 4Center for Biological Sequence Analysis, Department of Systems Biology, Technical University of Denmark, 2800 Kongens Lyngby, Denmark, 5Institute for Bioinformatics, Center for Biotechnology, Bielefeld University, 33594 Bielefeld, Germany, 6School of Computer Science, The University of Manchester, Manchester, M13 9PL, UK and 7European Bioinformatics Institute, EMBL, Wellcome Trust Genome Campus, Hinxton, Cambridge, CB10 1SD, UK","institution_ids":["https://openalex.org/I4432739","https://openalex.org/I4210102807","https://openalex.org/I96673099","https://openalex.org/I1303153112","https://openalex.org/I100532134","https://openalex.org/I1294671590"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5058793391","display_name":"P\u00e5l Puntervoll","orcid":"https://orcid.org/0000-0003-0093-7816"},"institutions":[{"id":"https://openalex.org/I4210102807","display_name":"Uni Research (Norway)","ror":"https://ror.org/016tr2j79","country_code":"NO","type":"company","lineage":["https://openalex.org/I4210102807"]},{"id":"https://openalex.org/I4432739","display_name":"University of Bergen","ror":"https://ror.org/03zga2b32","country_code":"NO","type":"education","lineage":["https://openalex.org/I4432739"]},{"id":"https://openalex.org/I96673099","display_name":"Technical University of Denmark","ror":"https://ror.org/04qtj9h94","country_code":"DK","type":"education","lineage":["https://openalex.org/I96673099"]},{"id":"https://openalex.org/I100532134","display_name":"Universit\u00e9 Claude Bernard Lyon 1","ror":"https://ror.org/029brtt94","country_code":"FR","type":"education","lineage":["https://openalex.org/I100532134","https://openalex.org/I203339264"]},{"id":"https://openalex.org/I1303153112","display_name":"European Bioinformatics Institute","ror":"https://ror.org/02catss52","country_code":"GB","type":"facility","lineage":["https://openalex.org/I1303153112","https://openalex.org/I4210138560"]},{"id":"https://openalex.org/I1294671590","display_name":"Centre National de la Recherche Scientifique","ror":"https://ror.org/02feahw73","country_code":"FR","type":"funder","lineage":["https://openalex.org/I1294671590"]}],"countries":["DK","FR","GB","NO"],"is_corresponding":false,"raw_author_name":"P\u00e5l Puntervoll","raw_affiliation_strings":["1 Computational Biology Unit, Bergen Center for Computational Science, Uni Research, 5008 Bergen, Norway, 2Department of Informatics, University of Bergen, 5008 Bergen, Norway, 3Universit\u00e9 Lyon 1; CNRS, UMR 5086; IBCP, Institut de Biologie et Chimie des Prot\u00e9ines, 69367 Lyon Cedex 07, France, 4Center for Biological Sequence Analysis, Department of Systems Biology, Technical University of Denmark, 2800 Kongens Lyngby, Denmark, 5Institute for Bioinformatics, Center for Biotechnology, Bielefeld University, 33594 Bielefeld, Germany, 6School of Computer Science, The University of Manchester, Manchester, M13 9PL, UK and 7European Bioinformatics Institute, EMBL, Wellcome Trust Genome Campus, Hinxton, Cambridge, CB10 1SD, UK"],"affiliations":[{"raw_affiliation_string":"1 Computational Biology Unit, Bergen Center for Computational Science, Uni Research, 5008 Bergen, Norway, 2Department of Informatics, University of Bergen, 5008 Bergen, Norway, 3Universit\u00e9 Lyon 1; CNRS, UMR 5086; IBCP, Institut de Biologie et Chimie des Prot\u00e9ines, 69367 Lyon Cedex 07, France, 4Center for Biological Sequence Analysis, Department of Systems Biology, Technical University of Denmark, 2800 Kongens Lyngby, Denmark, 5Institute for Bioinformatics, Center for Biotechnology, Bielefeld University, 33594 Bielefeld, Germany, 6School of Computer Science, The University of Manchester, Manchester, M13 9PL, UK and 7European Bioinformatics Institute, EMBL, Wellcome Trust Genome Campus, Hinxton, Cambridge, CB10 1SD, UK","institution_ids":["https://openalex.org/I4432739","https://openalex.org/I4210102807","https://openalex.org/I96673099","https://openalex.org/I1303153112","https://openalex.org/I100532134","https://openalex.org/I1294671590"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5075500350","display_name":"Alexandre Joseph","orcid":null},"institutions":[{"id":"https://openalex.org/I1303153112","display_name":"European Bioinformatics Institute","ror":"https://ror.org/02catss52","country_code":"GB","type":"facility","lineage":["https://openalex.org/I1303153112","https://openalex.org/I4210138560"]},{"id":"https://openalex.org/I1294671590","display_name":"Centre National de la Recherche Scientifique","ror":"https://ror.org/02feahw73","country_code":"FR","type":"funder","lineage":["https://openalex.org/I1294671590"]},{"id":"https://openalex.org/I4432739","display_name":"University of Bergen","ror":"https://ror.org/03zga2b32","country_code":"NO","type":"education","lineage":["https://openalex.org/I4432739"]},{"id":"https://openalex.org/I96673099","display_name":"Technical University of Denmark","ror":"https://ror.org/04qtj9h94","country_code":"DK","type":"education","lineage":["https://openalex.org/I96673099"]},{"id":"https://openalex.org/I4210102807","display_name":"Uni Research (Norway)","ror":"https://ror.org/016tr2j79","country_code":"NO","type":"company","lineage":["https://openalex.org/I4210102807"]},{"id":"https://openalex.org/I100532134","display_name":"Universit\u00e9 Claude Bernard Lyon 1","ror":"https://ror.org/029brtt94","country_code":"FR","type":"education","lineage":["https://openalex.org/I100532134","https://openalex.org/I203339264"]}],"countries":["DK","FR","GB","NO"],"is_corresponding":false,"raw_author_name":"Alexandre Joseph","raw_affiliation_strings":["1 Computational Biology Unit, Bergen Center for Computational Science, Uni Research, 5008 Bergen, Norway, 2Department of Informatics, University of Bergen, 5008 Bergen, Norway, 3Universit\u00e9 Lyon 1; CNRS, UMR 5086; IBCP, Institut de Biologie et Chimie des Prot\u00e9ines, 69367 Lyon Cedex 07, France, 4Center for Biological Sequence Analysis, Department of Systems Biology, Technical University of Denmark, 2800 Kongens Lyngby, Denmark, 5Institute for Bioinformatics, Center for Biotechnology, Bielefeld University, 33594 Bielefeld, Germany, 6School of Computer Science, The University of Manchester, Manchester, M13 9PL, UK and 7European Bioinformatics Institute, EMBL, Wellcome Trust Genome Campus, Hinxton, Cambridge, CB10 1SD, UK"],"affiliations":[{"raw_affiliation_string":"1 Computational Biology Unit, Bergen Center for Computational Science, Uni Research, 5008 Bergen, Norway, 2Department of Informatics, University of Bergen, 5008 Bergen, Norway, 3Universit\u00e9 Lyon 1; CNRS, UMR 5086; IBCP, Institut de Biologie et Chimie des Prot\u00e9ines, 69367 Lyon Cedex 07, France, 4Center for Biological Sequence Analysis, Department of Systems Biology, Technical University of Denmark, 2800 Kongens Lyngby, Denmark, 5Institute for Bioinformatics, Center for Biotechnology, Bielefeld University, 33594 Bielefeld, Germany, 6School of Computer Science, The University of Manchester, Manchester, M13 9PL, UK and 7European Bioinformatics Institute, EMBL, Wellcome Trust Genome Campus, Hinxton, Cambridge, CB10 1SD, UK","institution_ids":["https://openalex.org/I4432739","https://openalex.org/I4210102807","https://openalex.org/I96673099","https://openalex.org/I1303153112","https://openalex.org/I100532134","https://openalex.org/I1294671590"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5049234642","display_name":"Edita Barta\u0161evi\u010di\u016bt\u0117","orcid":null},"institutions":[{"id":"https://openalex.org/I96673099","display_name":"Technical University of Denmark","ror":"https://ror.org/04qtj9h94","country_code":"DK","type":"education","lineage":["https://openalex.org/I96673099"]},{"id":"https://openalex.org/I4210102807","display_name":"Uni Research (Norway)","ror":"https://ror.org/016tr2j79","country_code":"NO","type":"company","lineage":["https://openalex.org/I4210102807"]},{"id":"https://openalex.org/I100532134","display_name":"Universit\u00e9 Claude Bernard Lyon 1","ror":"https://ror.org/029brtt94","country_code":"FR","type":"education","lineage":["https://openalex.org/I100532134","https://openalex.org/I203339264"]},{"id":"https://openalex.org/I1303153112","display_name":"European Bioinformatics Institute","ror":"https://ror.org/02catss52","country_code":"GB","type":"facility","lineage":["https://openalex.org/I1303153112","https://openalex.org/I4210138560"]},{"id":"https://openalex.org/I1294671590","display_name":"Centre National de la Recherche Scientifique","ror":"https://ror.org/02feahw73","country_code":"FR","type":"funder","lineage":["https://openalex.org/I1294671590"]},{"id":"https://openalex.org/I4432739","display_name":"University of Bergen","ror":"https://ror.org/03zga2b32","country_code":"NO","type":"education","lineage":["https://openalex.org/I4432739"]}],"countries":["DK","FR","GB","NO"],"is_corresponding":false,"raw_author_name":"Edita Barta\u0161evi\u010di\u016bt\u0117","raw_affiliation_strings":["1 Computational Biology Unit, Bergen Center for Computational Science, Uni Research, 5008 Bergen, Norway, 2Department of Informatics, University of Bergen, 5008 Bergen, Norway, 3Universit\u00e9 Lyon 1; CNRS, UMR 5086; IBCP, Institut de Biologie et Chimie des Prot\u00e9ines, 69367 Lyon Cedex 07, France, 4Center for Biological Sequence Analysis, Department of Systems Biology, Technical University of Denmark, 2800 Kongens Lyngby, Denmark, 5Institute for Bioinformatics, Center for Biotechnology, Bielefeld University, 33594 Bielefeld, Germany, 6School of Computer Science, The University of Manchester, Manchester, M13 9PL, UK and 7European Bioinformatics Institute, EMBL, Wellcome Trust Genome Campus, Hinxton, Cambridge, CB10 1SD, UK"],"affiliations":[{"raw_affiliation_string":"1 Computational Biology Unit, Bergen Center for Computational Science, Uni Research, 5008 Bergen, Norway, 2Department of Informatics, University of Bergen, 5008 Bergen, Norway, 3Universit\u00e9 Lyon 1; CNRS, UMR 5086; IBCP, Institut de Biologie et Chimie des Prot\u00e9ines, 69367 Lyon Cedex 07, France, 4Center for Biological Sequence Analysis, Department of Systems Biology, Technical University of Denmark, 2800 Kongens Lyngby, Denmark, 5Institute for Bioinformatics, Center for Biotechnology, Bielefeld University, 33594 Bielefeld, Germany, 6School of Computer Science, The University of Manchester, Manchester, M13 9PL, UK and 7European Bioinformatics Institute, EMBL, Wellcome Trust Genome Campus, Hinxton, Cambridge, CB10 1SD, UK","institution_ids":["https://openalex.org/I4432739","https://openalex.org/I4210102807","https://openalex.org/I96673099","https://openalex.org/I1303153112","https://openalex.org/I100532134","https://openalex.org/I1294671590"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5060717574","display_name":"Armin T\u00f6pfer","orcid":"https://orcid.org/0000-0003-1637-1466"},"institutions":[{"id":"https://openalex.org/I1294671590","display_name":"Centre National de la Recherche Scientifique","ror":"https://ror.org/02feahw73","country_code":"FR","type":"funder","lineage":["https://openalex.org/I1294671590"]},{"id":"https://openalex.org/I1303153112","display_name":"European Bioinformatics Institute","ror":"https://ror.org/02catss52","country_code":"GB","type":"facility","lineage":["https://openalex.org/I1303153112","https://openalex.org/I4210138560"]},{"id":"https://openalex.org/I4210102807","display_name":"Uni Research (Norway)","ror":"https://ror.org/016tr2j79","country_code":"NO","type":"company","lineage":["https://openalex.org/I4210102807"]},{"id":"https://openalex.org/I96673099","display_name":"Technical University of Denmark","ror":"https://ror.org/04qtj9h94","country_code":"DK","type":"education","lineage":["https://openalex.org/I96673099"]},{"id":"https://openalex.org/I100532134","display_name":"Universit\u00e9 Claude Bernard Lyon 1","ror":"https://ror.org/029brtt94","country_code":"FR","type":"education","lineage":["https://openalex.org/I100532134","https://openalex.org/I203339264"]},{"id":"https://openalex.org/I4432739","display_name":"University of Bergen","ror":"https://ror.org/03zga2b32","country_code":"NO","type":"education","lineage":["https://openalex.org/I4432739"]}],"countries":["DK","FR","GB","NO"],"is_corresponding":false,"raw_author_name":"Armin T\u00f6pfer","raw_affiliation_strings":["1 Computational Biology Unit, Bergen Center for Computational Science, Uni Research, 5008 Bergen, Norway, 2Department of Informatics, University of Bergen, 5008 Bergen, Norway, 3Universit\u00e9 Lyon 1; CNRS, UMR 5086; IBCP, Institut de Biologie et Chimie des Prot\u00e9ines, 69367 Lyon Cedex 07, France, 4Center for Biological Sequence Analysis, Department of Systems Biology, Technical University of Denmark, 2800 Kongens Lyngby, Denmark, 5Institute for Bioinformatics, Center for Biotechnology, Bielefeld University, 33594 Bielefeld, Germany, 6School of Computer Science, The University of Manchester, Manchester, M13 9PL, UK and 7European Bioinformatics Institute, EMBL, Wellcome Trust Genome Campus, Hinxton, Cambridge, CB10 1SD, UK"],"affiliations":[{"raw_affiliation_string":"1 Computational Biology Unit, Bergen Center for Computational Science, Uni Research, 5008 Bergen, Norway, 2Department of Informatics, University of Bergen, 5008 Bergen, Norway, 3Universit\u00e9 Lyon 1; CNRS, UMR 5086; IBCP, Institut de Biologie et Chimie des Prot\u00e9ines, 69367 Lyon Cedex 07, France, 4Center for Biological Sequence Analysis, Department of Systems Biology, Technical University of Denmark, 2800 Kongens Lyngby, Denmark, 5Institute for Bioinformatics, Center for Biotechnology, Bielefeld University, 33594 Bielefeld, Germany, 6School of Computer Science, The University of Manchester, Manchester, M13 9PL, UK and 7European Bioinformatics Institute, EMBL, Wellcome Trust Genome Campus, Hinxton, Cambridge, CB10 1SD, UK","institution_ids":["https://openalex.org/I4432739","https://openalex.org/I4210102807","https://openalex.org/I96673099","https://openalex.org/I1303153112","https://openalex.org/I100532134","https://openalex.org/I1294671590"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5073098703","display_name":"Prabakar Venkataraman","orcid":null},"institutions":[{"id":"https://openalex.org/I1303153112","display_name":"European Bioinformatics Institute","ror":"https://ror.org/02catss52","country_code":"GB","type":"facility","lineage":["https://openalex.org/I1303153112","https://openalex.org/I4210138560"]},{"id":"https://openalex.org/I96673099","display_name":"Technical University of Denmark","ror":"https://ror.org/04qtj9h94","country_code":"DK","type":"education","lineage":["https://openalex.org/I96673099"]},{"id":"https://openalex.org/I4210102807","display_name":"Uni Research (Norway)","ror":"https://ror.org/016tr2j79","country_code":"NO","type":"company","lineage":["https://openalex.org/I4210102807"]},{"id":"https://openalex.org/I100532134","display_name":"Universit\u00e9 Claude Bernard Lyon 1","ror":"https://ror.org/029brtt94","country_code":"FR","type":"education","lineage":["https://openalex.org/I100532134","https://openalex.org/I203339264"]},{"id":"https://openalex.org/I1294671590","display_name":"Centre National de la Recherche Scientifique","ror":"https://ror.org/02feahw73","country_code":"FR","type":"funder","lineage":["https://openalex.org/I1294671590"]},{"id":"https://openalex.org/I4432739","display_name":"University of Bergen","ror":"https://ror.org/03zga2b32","country_code":"NO","type":"education","lineage":["https://openalex.org/I4432739"]}],"countries":["DK","FR","GB","NO"],"is_corresponding":false,"raw_author_name":"Prabakar Venkataraman","raw_affiliation_strings":["1 Computational Biology Unit, Bergen Center for Computational Science, Uni Research, 5008 Bergen, Norway, 2Department of Informatics, University of Bergen, 5008 Bergen, Norway, 3Universit\u00e9 Lyon 1; CNRS, UMR 5086; IBCP, Institut de Biologie et Chimie des Prot\u00e9ines, 69367 Lyon Cedex 07, France, 4Center for Biological Sequence Analysis, Department of Systems Biology, Technical University of Denmark, 2800 Kongens Lyngby, Denmark, 5Institute for Bioinformatics, Center for Biotechnology, Bielefeld University, 33594 Bielefeld, Germany, 6School of Computer Science, The University of Manchester, Manchester, M13 9PL, UK and 7European Bioinformatics Institute, EMBL, Wellcome Trust Genome Campus, Hinxton, Cambridge, CB10 1SD, UK"],"affiliations":[{"raw_affiliation_string":"1 Computational Biology Unit, Bergen Center for Computational Science, Uni Research, 5008 Bergen, Norway, 2Department of Informatics, University of Bergen, 5008 Bergen, Norway, 3Universit\u00e9 Lyon 1; CNRS, UMR 5086; IBCP, Institut de Biologie et Chimie des Prot\u00e9ines, 69367 Lyon Cedex 07, France, 4Center for Biological Sequence Analysis, Department of Systems Biology, Technical University of Denmark, 2800 Kongens Lyngby, Denmark, 5Institute for Bioinformatics, Center for Biotechnology, Bielefeld University, 33594 Bielefeld, Germany, 6School of Computer Science, The University of Manchester, Manchester, M13 9PL, UK and 7European Bioinformatics Institute, EMBL, Wellcome Trust Genome Campus, Hinxton, Cambridge, CB10 1SD, UK","institution_ids":["https://openalex.org/I4432739","https://openalex.org/I4210102807","https://openalex.org/I96673099","https://openalex.org/I1303153112","https://openalex.org/I100532134","https://openalex.org/I1294671590"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5081272754","display_name":"Steve Pettifer","orcid":"https://orcid.org/0000-0002-1809-5621"},"institutions":[{"id":"https://openalex.org/I4210102807","display_name":"Uni Research (Norway)","ror":"https://ror.org/016tr2j79","country_code":"NO","type":"company","lineage":["https://openalex.org/I4210102807"]},{"id":"https://openalex.org/I1294671590","display_name":"Centre National de la Recherche Scientifique","ror":"https://ror.org/02feahw73","country_code":"FR","type":"funder","lineage":["https://openalex.org/I1294671590"]},{"id":"https://openalex.org/I4432739","display_name":"University of Bergen","ror":"https://ror.org/03zga2b32","country_code":"NO","type":"education","lineage":["https://openalex.org/I4432739"]},{"id":"https://openalex.org/I1303153112","display_name":"European Bioinformatics Institute","ror":"https://ror.org/02catss52","country_code":"GB","type":"facility","lineage":["https://openalex.org/I1303153112","https://openalex.org/I4210138560"]},{"id":"https://openalex.org/I100532134","display_name":"Universit\u00e9 Claude Bernard Lyon 1","ror":"https://ror.org/029brtt94","country_code":"FR","type":"education","lineage":["https://openalex.org/I100532134","https://openalex.org/I203339264"]},{"id":"https://openalex.org/I96673099","display_name":"Technical University of Denmark","ror":"https://ror.org/04qtj9h94","country_code":"DK","type":"education","lineage":["https://openalex.org/I96673099"]}],"countries":["DK","FR","GB","NO"],"is_corresponding":false,"raw_author_name":"Steve Pettifer","raw_affiliation_strings":["1 Computational Biology Unit, Bergen Center for Computational Science, Uni Research, 5008 Bergen, Norway, 2Department of Informatics, University of Bergen, 5008 Bergen, Norway, 3Universit\u00e9 Lyon 1; CNRS, UMR 5086; IBCP, Institut de Biologie et Chimie des Prot\u00e9ines, 69367 Lyon Cedex 07, France, 4Center for Biological Sequence Analysis, Department of Systems Biology, Technical University of Denmark, 2800 Kongens Lyngby, Denmark, 5Institute for Bioinformatics, Center for Biotechnology, Bielefeld University, 33594 Bielefeld, Germany, 6School of Computer Science, The University of Manchester, Manchester, M13 9PL, UK and 7European Bioinformatics Institute, EMBL, Wellcome Trust Genome Campus, Hinxton, Cambridge, CB10 1SD, UK"],"affiliations":[{"raw_affiliation_string":"1 Computational Biology Unit, Bergen Center for Computational Science, Uni Research, 5008 Bergen, Norway, 2Department of Informatics, University of Bergen, 5008 Bergen, Norway, 3Universit\u00e9 Lyon 1; CNRS, UMR 5086; IBCP, Institut de Biologie et Chimie des Prot\u00e9ines, 69367 Lyon Cedex 07, France, 4Center for Biological Sequence Analysis, Department of Systems Biology, Technical University of Denmark, 2800 Kongens Lyngby, Denmark, 5Institute for Bioinformatics, Center for Biotechnology, Bielefeld University, 33594 Bielefeld, Germany, 6School of Computer Science, The University of Manchester, Manchester, M13 9PL, UK and 7European Bioinformatics Institute, EMBL, Wellcome Trust Genome Campus, Hinxton, Cambridge, CB10 1SD, UK","institution_ids":["https://openalex.org/I4432739","https://openalex.org/I4210102807","https://openalex.org/I96673099","https://openalex.org/I1303153112","https://openalex.org/I100532134","https://openalex.org/I1294671590"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5108499417","display_name":"Jan Christian Bryne","orcid":null},"institutions":[{"id":"https://openalex.org/I4432739","display_name":"University of Bergen","ror":"https://ror.org/03zga2b32","country_code":"NO","type":"education","lineage":["https://openalex.org/I4432739"]},{"id":"https://openalex.org/I4210102807","display_name":"Uni Research (Norway)","ror":"https://ror.org/016tr2j79","country_code":"NO","type":"company","lineage":["https://openalex.org/I4210102807"]},{"id":"https://openalex.org/I1303153112","display_name":"European Bioinformatics Institute","ror":"https://ror.org/02catss52","country_code":"GB","type":"facility","lineage":["https://openalex.org/I1303153112","https://openalex.org/I4210138560"]},{"id":"https://openalex.org/I96673099","display_name":"Technical University of Denmark","ror":"https://ror.org/04qtj9h94","country_code":"DK","type":"education","lineage":["https://openalex.org/I96673099"]},{"id":"https://openalex.org/I100532134","display_name":"Universit\u00e9 Claude Bernard Lyon 1","ror":"https://ror.org/029brtt94","country_code":"FR","type":"education","lineage":["https://openalex.org/I100532134","https://openalex.org/I203339264"]},{"id":"https://openalex.org/I1294671590","display_name":"Centre National de la Recherche Scientifique","ror":"https://ror.org/02feahw73","country_code":"FR","type":"funder","lineage":["https://openalex.org/I1294671590"]}],"countries":["DK","FR","GB","NO"],"is_corresponding":false,"raw_author_name":"Jan Christian Bryne","raw_affiliation_strings":["1 Computational Biology Unit, Bergen Center for Computational Science, Uni Research, 5008 Bergen, Norway, 2Department of Informatics, University of Bergen, 5008 Bergen, Norway, 3Universit\u00e9 Lyon 1; CNRS, UMR 5086; IBCP, Institut de Biologie et Chimie des Prot\u00e9ines, 69367 Lyon Cedex 07, France, 4Center for Biological Sequence Analysis, Department of Systems Biology, Technical University of Denmark, 2800 Kongens Lyngby, Denmark, 5Institute for Bioinformatics, Center for Biotechnology, Bielefeld University, 33594 Bielefeld, Germany, 6School of Computer Science, The University of Manchester, Manchester, M13 9PL, UK and 7European Bioinformatics Institute, EMBL, Wellcome Trust Genome Campus, Hinxton, Cambridge, CB10 1SD, UK"],"affiliations":[{"raw_affiliation_string":"1 Computational Biology Unit, Bergen Center for Computational Science, Uni Research, 5008 Bergen, Norway, 2Department of Informatics, University of Bergen, 5008 Bergen, Norway, 3Universit\u00e9 Lyon 1; CNRS, UMR 5086; IBCP, Institut de Biologie et Chimie des Prot\u00e9ines, 69367 Lyon Cedex 07, France, 4Center for Biological Sequence Analysis, Department of Systems Biology, Technical University of Denmark, 2800 Kongens Lyngby, Denmark, 5Institute for Bioinformatics, Center for Biotechnology, Bielefeld University, 33594 Bielefeld, Germany, 6School of Computer Science, The University of Manchester, Manchester, M13 9PL, UK and 7European Bioinformatics Institute, EMBL, Wellcome Trust Genome Campus, Hinxton, Cambridge, CB10 1SD, UK","institution_ids":["https://openalex.org/I4432739","https://openalex.org/I4210102807","https://openalex.org/I96673099","https://openalex.org/I1303153112","https://openalex.org/I100532134","https://openalex.org/I1294671590"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5080837511","display_name":"Jon Ison","orcid":"https://orcid.org/0000-0001-6666-1520"},"institutions":[{"id":"https://openalex.org/I1303153112","display_name":"European Bioinformatics Institute","ror":"https://ror.org/02catss52","country_code":"GB","type":"facility","lineage":["https://openalex.org/I1303153112","https://openalex.org/I4210138560"]},{"id":"https://openalex.org/I100532134","display_name":"Universit\u00e9 Claude Bernard Lyon 1","ror":"https://ror.org/029brtt94","country_code":"FR","type":"education","lineage":["https://openalex.org/I100532134","https://openalex.org/I203339264"]},{"id":"https://openalex.org/I4432739","display_name":"University of Bergen","ror":"https://ror.org/03zga2b32","country_code":"NO","type":"education","lineage":["https://openalex.org/I4432739"]},{"id":"https://openalex.org/I96673099","display_name":"Technical University of Denmark","ror":"https://ror.org/04qtj9h94","country_code":"DK","type":"education","lineage":["https://openalex.org/I96673099"]},{"id":"https://openalex.org/I4210102807","display_name":"Uni Research (Norway)","ror":"https://ror.org/016tr2j79","country_code":"NO","type":"company","lineage":["https://openalex.org/I4210102807"]},{"id":"https://openalex.org/I1294671590","display_name":"Centre National de la Recherche Scientifique","ror":"https://ror.org/02feahw73","country_code":"FR","type":"funder","lineage":["https://openalex.org/I1294671590"]}],"countries":["DK","FR","GB","NO"],"is_corresponding":false,"raw_author_name":"Jon Ison","raw_affiliation_strings":["1 Computational Biology Unit, Bergen Center for Computational Science, Uni Research, 5008 Bergen, Norway, 2Department of Informatics, University of Bergen, 5008 Bergen, Norway, 3Universit\u00e9 Lyon 1; CNRS, UMR 5086; IBCP, Institut de Biologie et Chimie des Prot\u00e9ines, 69367 Lyon Cedex 07, France, 4Center for Biological Sequence Analysis, Department of Systems Biology, Technical University of Denmark, 2800 Kongens Lyngby, Denmark, 5Institute for Bioinformatics, Center for Biotechnology, Bielefeld University, 33594 Bielefeld, Germany, 6School of Computer Science, The University of Manchester, Manchester, M13 9PL, UK and 7European Bioinformatics Institute, EMBL, Wellcome Trust Genome Campus, Hinxton, Cambridge, CB10 1SD, UK"],"affiliations":[{"raw_affiliation_string":"1 Computational Biology Unit, Bergen Center for Computational Science, Uni Research, 5008 Bergen, Norway, 2Department of Informatics, University of Bergen, 5008 Bergen, Norway, 3Universit\u00e9 Lyon 1; CNRS, UMR 5086; IBCP, Institut de Biologie et Chimie des Prot\u00e9ines, 69367 Lyon Cedex 07, France, 4Center for Biological Sequence Analysis, Department of Systems Biology, Technical University of Denmark, 2800 Kongens Lyngby, Denmark, 5Institute for Bioinformatics, Center for Biotechnology, Bielefeld University, 33594 Bielefeld, Germany, 6School of Computer Science, The University of Manchester, Manchester, M13 9PL, UK and 7European Bioinformatics Institute, EMBL, Wellcome Trust Genome Campus, Hinxton, Cambridge, CB10 1SD, UK","institution_ids":["https://openalex.org/I4432739","https://openalex.org/I4210102807","https://openalex.org/I96673099","https://openalex.org/I1303153112","https://openalex.org/I100532134","https://openalex.org/I1294671590"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5108831913","display_name":"Christophe Blanchet","orcid":null},"institutions":[{"id":"https://openalex.org/I1294671590","display_name":"Centre National de la Recherche Scientifique","ror":"https://ror.org/02feahw73","country_code":"FR","type":"funder","lineage":["https://openalex.org/I1294671590"]},{"id":"https://openalex.org/I100532134","display_name":"Universit\u00e9 Claude Bernard Lyon 1","ror":"https://ror.org/029brtt94","country_code":"FR","type":"education","lineage":["https://openalex.org/I100532134","https://openalex.org/I203339264"]},{"id":"https://openalex.org/I96673099","display_name":"Technical University of Denmark","ror":"https://ror.org/04qtj9h94","country_code":"DK","type":"education","lineage":["https://openalex.org/I96673099"]},{"id":"https://openalex.org/I4432739","display_name":"University of Bergen","ror":"https://ror.org/03zga2b32","country_code":"NO","type":"education","lineage":["https://openalex.org/I4432739"]},{"id":"https://openalex.org/I1303153112","display_name":"European Bioinformatics Institute","ror":"https://ror.org/02catss52","country_code":"GB","type":"facility","lineage":["https://openalex.org/I1303153112","https://openalex.org/I4210138560"]},{"id":"https://openalex.org/I4210102807","display_name":"Uni Research (Norway)","ror":"https://ror.org/016tr2j79","country_code":"NO","type":"company","lineage":["https://openalex.org/I4210102807"]}],"countries":["DK","FR","GB","NO"],"is_corresponding":false,"raw_author_name":"Christophe Blanchet","raw_affiliation_strings":["1 Computational Biology Unit, Bergen Center for Computational Science, Uni Research, 5008 Bergen, Norway, 2Department of Informatics, University of Bergen, 5008 Bergen, Norway, 3Universit\u00e9 Lyon 1; CNRS, UMR 5086; IBCP, Institut de Biologie et Chimie des Prot\u00e9ines, 69367 Lyon Cedex 07, France, 4Center for Biological Sequence Analysis, Department of Systems Biology, Technical University of Denmark, 2800 Kongens Lyngby, Denmark, 5Institute for Bioinformatics, Center for Biotechnology, Bielefeld University, 33594 Bielefeld, Germany, 6School of Computer Science, The University of Manchester, Manchester, M13 9PL, UK and 7European Bioinformatics Institute, EMBL, Wellcome Trust Genome Campus, Hinxton, Cambridge, CB10 1SD, UK"],"affiliations":[{"raw_affiliation_string":"1 Computational Biology Unit, Bergen Center for Computational Science, Uni Research, 5008 Bergen, Norway, 2Department of Informatics, University of Bergen, 5008 Bergen, Norway, 3Universit\u00e9 Lyon 1; CNRS, UMR 5086; IBCP, Institut de Biologie et Chimie des Prot\u00e9ines, 69367 Lyon Cedex 07, France, 4Center for Biological Sequence Analysis, Department of Systems Biology, Technical University of Denmark, 2800 Kongens Lyngby, Denmark, 5Institute for Bioinformatics, Center for Biotechnology, Bielefeld University, 33594 Bielefeld, Germany, 6School of Computer Science, The University of Manchester, Manchester, M13 9PL, UK and 7European Bioinformatics Institute, EMBL, Wellcome Trust Genome Campus, Hinxton, Cambridge, CB10 1SD, UK","institution_ids":["https://openalex.org/I4432739","https://openalex.org/I4210102807","https://openalex.org/I96673099","https://openalex.org/I1303153112","https://openalex.org/I100532134","https://openalex.org/I1294671590"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5016909243","display_name":"Kristoffer Rapacki","orcid":null},"institutions":[{"id":"https://openalex.org/I4432739","display_name":"University of Bergen","ror":"https://ror.org/03zga2b32","country_code":"NO","type":"education","lineage":["https://openalex.org/I4432739"]},{"id":"https://openalex.org/I1303153112","display_name":"European Bioinformatics Institute","ror":"https://ror.org/02catss52","country_code":"GB","type":"facility","lineage":["https://openalex.org/I1303153112","https://openalex.org/I4210138560"]},{"id":"https://openalex.org/I1294671590","display_name":"Centre National de la Recherche Scientifique","ror":"https://ror.org/02feahw73","country_code":"FR","type":"funder","lineage":["https://openalex.org/I1294671590"]},{"id":"https://openalex.org/I4210102807","display_name":"Uni Research (Norway)","ror":"https://ror.org/016tr2j79","country_code":"NO","type":"company","lineage":["https://openalex.org/I4210102807"]},{"id":"https://openalex.org/I96673099","display_name":"Technical University of Denmark","ror":"https://ror.org/04qtj9h94","country_code":"DK","type":"education","lineage":["https://openalex.org/I96673099"]},{"id":"https://openalex.org/I100532134","display_name":"Universit\u00e9 Claude Bernard Lyon 1","ror":"https://ror.org/029brtt94","country_code":"FR","type":"education","lineage":["https://openalex.org/I100532134","https://openalex.org/I203339264"]}],"countries":["DK","FR","GB","NO"],"is_corresponding":false,"raw_author_name":"Kristoffer Rapacki","raw_affiliation_strings":["1 Computational Biology Unit, Bergen Center for Computational Science, Uni Research, 5008 Bergen, Norway, 2Department of Informatics, University of Bergen, 5008 Bergen, Norway, 3Universit\u00e9 Lyon 1; CNRS, UMR 5086; IBCP, Institut de Biologie et Chimie des Prot\u00e9ines, 69367 Lyon Cedex 07, France, 4Center for Biological Sequence Analysis, Department of Systems Biology, Technical University of Denmark, 2800 Kongens Lyngby, Denmark, 5Institute for Bioinformatics, Center for Biotechnology, Bielefeld University, 33594 Bielefeld, Germany, 6School of Computer Science, The University of Manchester, Manchester, M13 9PL, UK and 7European Bioinformatics Institute, EMBL, Wellcome Trust Genome Campus, Hinxton, Cambridge, CB10 1SD, UK"],"affiliations":[{"raw_affiliation_string":"1 Computational Biology Unit, Bergen Center for Computational Science, Uni Research, 5008 Bergen, Norway, 2Department of Informatics, University of Bergen, 5008 Bergen, Norway, 3Universit\u00e9 Lyon 1; CNRS, UMR 5086; IBCP, Institut de Biologie et Chimie des Prot\u00e9ines, 69367 Lyon Cedex 07, France, 4Center for Biological Sequence Analysis, Department of Systems Biology, Technical University of Denmark, 2800 Kongens Lyngby, Denmark, 5Institute for Bioinformatics, Center for Biotechnology, Bielefeld University, 33594 Bielefeld, Germany, 6School of Computer Science, The University of Manchester, Manchester, M13 9PL, UK and 7European Bioinformatics Institute, EMBL, Wellcome Trust Genome Campus, Hinxton, Cambridge, CB10 1SD, UK","institution_ids":["https://openalex.org/I4432739","https://openalex.org/I4210102807","https://openalex.org/I96673099","https://openalex.org/I1303153112","https://openalex.org/I100532134","https://openalex.org/I1294671590"]}]},{"author_position":"last","author":{"id":"https://openalex.org/A5012964587","display_name":"Inge Jonassen","orcid":"https://orcid.org/0000-0003-4110-0748"},"institutions":[{"id":"https://openalex.org/I1303153112","display_name":"European Bioinformatics Institute","ror":"https://ror.org/02catss52","country_code":"GB","type":"facility","lineage":["https://openalex.org/I1303153112","https://openalex.org/I4210138560"]},{"id":"https://openalex.org/I96673099","display_name":"Technical University of Denmark","ror":"https://ror.org/04qtj9h94","country_code":"DK","type":"education","lineage":["https://openalex.org/I96673099"]},{"id":"https://openalex.org/I4210102807","display_name":"Uni Research (Norway)","ror":"https://ror.org/016tr2j79","country_code":"NO","type":"company","lineage":["https://openalex.org/I4210102807"]},{"id":"https://openalex.org/I4432739","display_name":"University of Bergen","ror":"https://ror.org/03zga2b32","country_code":"NO","type":"education","lineage":["https://openalex.org/I4432739"]},{"id":"https://openalex.org/I1294671590","display_name":"Centre National de la Recherche Scientifique","ror":"https://ror.org/02feahw73","country_code":"FR","type":"funder","lineage":["https://openalex.org/I1294671590"]},{"id":"https://openalex.org/I100532134","display_name":"Universit\u00e9 Claude Bernard Lyon 1","ror":"https://ror.org/029brtt94","country_code":"FR","type":"education","lineage":["https://openalex.org/I100532134","https://openalex.org/I203339264"]}],"countries":["DK","FR","GB","NO"],"is_corresponding":false,"raw_author_name":"Inge Jonassen","raw_affiliation_strings":["1 Computational Biology Unit, Bergen Center for Computational Science, Uni Research, 5008 Bergen, Norway, 2Department of Informatics, University of Bergen, 5008 Bergen, Norway, 3Universit\u00e9 Lyon 1; CNRS, UMR 5086; IBCP, Institut de Biologie et Chimie des Prot\u00e9ines, 69367 Lyon Cedex 07, France, 4Center for Biological Sequence Analysis, Department of Systems Biology, Technical University of Denmark, 2800 Kongens Lyngby, Denmark, 5Institute for Bioinformatics, Center for Biotechnology, Bielefeld University, 33594 Bielefeld, Germany, 6School of Computer Science, The University of Manchester, Manchester, M13 9PL, UK and 7European Bioinformatics Institute, EMBL, Wellcome Trust Genome Campus, Hinxton, Cambridge, CB10 1SD, UK"],"affiliations":[{"raw_affiliation_string":"1 Computational Biology Unit, Bergen Center for Computational Science, Uni Research, 5008 Bergen, Norway, 2Department of Informatics, University of Bergen, 5008 Bergen, Norway, 3Universit\u00e9 Lyon 1; CNRS, UMR 5086; IBCP, Institut de Biologie et Chimie des Prot\u00e9ines, 69367 Lyon Cedex 07, France, 4Center for Biological Sequence Analysis, Department of Systems Biology, Technical University of Denmark, 2800 Kongens Lyngby, Denmark, 5Institute for Bioinformatics, Center for Biotechnology, Bielefeld University, 33594 Bielefeld, Germany, 6School of Computer Science, The University of Manchester, Manchester, M13 9PL, UK and 7European Bioinformatics Institute, EMBL, Wellcome Trust Genome Campus, Hinxton, Cambridge, CB10 1SD, UK","institution_ids":["https://openalex.org/I4432739","https://openalex.org/I4210102807","https://openalex.org/I96673099","https://openalex.org/I1303153112","https://openalex.org/I100532134","https://openalex.org/I1294671590"]}]}],"institutions":[],"countries_distinct_count":4,"institutions_distinct_count":12,"corresponding_author_ids":["https://openalex.org/A5007975575"],"corresponding_institution_ids":["https://openalex.org/I100532134","https://openalex.org/I1294671590","https://openalex.org/I1303153112","https://openalex.org/I4210102807","https://openalex.org/I4432739","https://openalex.org/I96673099"],"apc_list":{"value":3618,"currency":"USD","value_usd":3618},"apc_paid":{"value":3618,"currency":"USD","value_usd":3618},"fwci":1.1895,"has_fulltext":false,"cited_by_count":24,"citation_normalized_percentile":{"value":0.77845125,"is_in_top_1_percent":false,"is_in_top_10_percent":false},"cited_by_percentile_year":{"min":90,"max":99},"biblio":{"volume":"26","issue":"18","first_page":"i540","last_page":"i546"},"is_retracted":false,"is_paratext":false,"is_xpac":false,"primary_topic":{"id":"https://openalex.org/T10015","display_name":"Genomics and Phylogenetic Studies","score":0.9984999895095825,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},"topics":[{"id":"https://openalex.org/T10015","display_name":"Genomics and Phylogenetic Studies","score":0.9984999895095825,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},{"id":"https://openalex.org/T11986","display_name":"Scientific Computing and Data Management","score":0.9965999722480774,"subfield":{"id":"https://openalex.org/subfields/1802","display_name":"Information Systems and Management"},"field":{"id":"https://openalex.org/fields/18","display_name":"Decision Sciences"},"domain":{"id":"https://openalex.org/domains/2","display_name":"Social Sciences"}},{"id":"https://openalex.org/T10885","display_name":"Gene expression and cancer classification","score":0.9937000274658203,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}}],"keywords":[{"id":"https://openalex.org/keywords/computer-science","display_name":"Computer science","score":0.8352549076080322},{"id":"https://openalex.org/keywords/world-wide-web","display_name":"World Wide Web","score":0.5964730978012085},{"id":"https://openalex.org/keywords/xml","display_name":"XML","score":0.5654407739639282},{"id":"https://openalex.org/keywords/web-service","display_name":"Web service","score":0.5493478775024414},{"id":"https://openalex.org/keywords/workflow","display_name":"Workflow","score":0.5141758918762207},{"id":"https://openalex.org/keywords/application-programming-interface","display_name":"Application programming interface","score":0.48804202675819397},{"id":"https://openalex.org/keywords/interoperability","display_name":"Interoperability","score":0.4365687966346741},{"id":"https://openalex.org/keywords/data-exchange","display_name":"Data exchange","score":0.4360276758670807},{"id":"https://openalex.org/keywords/documentation","display_name":"Documentation","score":0.4243777394294739},{"id":"https://openalex.org/keywords/information-retrieval","display_name":"Information retrieval","score":0.3415951728820801},{"id":"https://openalex.org/keywords/database","display_name":"Database","score":0.3286847174167633},{"id":"https://openalex.org/keywords/programming-language","display_name":"Programming language","score":0.13696667551994324}],"concepts":[{"id":"https://openalex.org/C41008148","wikidata":"https://www.wikidata.org/wiki/Q21198","display_name":"Computer science","level":0,"score":0.8352549076080322},{"id":"https://openalex.org/C136764020","wikidata":"https://www.wikidata.org/wiki/Q466","display_name":"World Wide Web","level":1,"score":0.5964730978012085},{"id":"https://openalex.org/C8797682","wikidata":"https://www.wikidata.org/wiki/Q2115","display_name":"XML","level":2,"score":0.5654407739639282},{"id":"https://openalex.org/C35578498","wikidata":"https://www.wikidata.org/wiki/Q193424","display_name":"Web service","level":2,"score":0.5493478775024414},{"id":"https://openalex.org/C177212765","wikidata":"https://www.wikidata.org/wiki/Q627335","display_name":"Workflow","level":2,"score":0.5141758918762207},{"id":"https://openalex.org/C99613125","wikidata":"https://www.wikidata.org/wiki/Q165194","display_name":"Application programming interface","level":2,"score":0.48804202675819397},{"id":"https://openalex.org/C20136886","wikidata":"https://www.wikidata.org/wiki/Q749647","display_name":"Interoperability","level":2,"score":0.4365687966346741},{"id":"https://openalex.org/C15845906","wikidata":"https://www.wikidata.org/wiki/Q1172338","display_name":"Data exchange","level":2,"score":0.4360276758670807},{"id":"https://openalex.org/C56666940","wikidata":"https://www.wikidata.org/wiki/Q788790","display_name":"Documentation","level":2,"score":0.4243777394294739},{"id":"https://openalex.org/C23123220","wikidata":"https://www.wikidata.org/wiki/Q816826","display_name":"Information retrieval","level":1,"score":0.3415951728820801},{"id":"https://openalex.org/C77088390","wikidata":"https://www.wikidata.org/wiki/Q8513","display_name":"Database","level":1,"score":0.3286847174167633},{"id":"https://openalex.org/C199360897","wikidata":"https://www.wikidata.org/wiki/Q9143","display_name":"Programming language","level":1,"score":0.13696667551994324}],"mesh":[{"descriptor_ui":"D000595","descriptor_name":"Amino Acid Sequence","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D000595","descriptor_name":"Amino Acid Sequence","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D000595","descriptor_name":"Amino Acid Sequence","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D008969","descriptor_name":"Molecular Sequence Data","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D008969","descriptor_name":"Molecular Sequence Data","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D008969","descriptor_name":"Molecular Sequence Data","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D011381","descriptor_name":"Programming Languages","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D011381","descriptor_name":"Programming Languages","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D011381","descriptor_name":"Programming Languages","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D012660","descriptor_name":"Semantics","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D012660","descriptor_name":"Semantics","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D012660","descriptor_name":"Semantics","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D012984","descriptor_name":"Software","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D012984","descriptor_name":"Software","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D012984","descriptor_name":"Software","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D016247","descriptor_name":"Information Storage and Retrieval","qualifier_ui":"Q000592","qualifier_name":"standards","is_major_topic":true},{"descriptor_ui":"D016247","descriptor_name":"Information Storage and Retrieval","qualifier_ui":"Q000592","qualifier_name":"standards","is_major_topic":true},{"descriptor_ui":"D016247","descriptor_name":"Information Storage and Retrieval","qualifier_ui":"Q000592","qualifier_name":"standards","is_major_topic":true},{"descriptor_ui":"D019295","descriptor_name":"Computational Biology","qualifier_ui":"Q000379","qualifier_name":"methods","is_major_topic":false},{"descriptor_ui":"D019295","descriptor_name":"Computational Biology","qualifier_ui":"Q000379","qualifier_name":"methods","is_major_topic":false},{"descriptor_ui":"D019295","descriptor_name":"Computational Biology","qualifier_ui":"Q000379","qualifier_name":"methods","is_major_topic":false},{"descriptor_ui":"D020407","descriptor_name":"Internet","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D020407","descriptor_name":"Internet","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D020407","descriptor_name":"Internet","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D057188","descriptor_name":"Workflow","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D057188","descriptor_name":"Workflow","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D057188","descriptor_name":"Workflow","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false}],"locations_count":7,"locations":[{"id":"doi:10.1093/bioinformatics/btq391","is_oa":true,"landing_page_url":"https://doi.org/10.1093/bioinformatics/btq391","pdf_url":"https://academic.oup.com/bioinformatics/article-pdf/26/18/i540/541290/btq391.pdf","source":{"id":"https://openalex.org/S52395412","display_name":"Bioinformatics","issn_l":"1367-4803","issn":["1367-4803","1367-4811"],"is_oa":false,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310311648","host_organization_name":"Oxford University Press","host_organization_lineage":["https://openalex.org/P4310311648","https://openalex.org/P4310311647"],"host_organization_lineage_names":["Oxford University Press","University of Oxford"],"type":"journal"},"license":"cc-by-nc","license_id":"https://openalex.org/licenses/cc-by-nc","version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Bioinformatics","raw_type":"journal-article"},{"id":"pmid:20823319","is_oa":false,"landing_page_url":"https://pubmed.ncbi.nlm.nih.gov/20823319","pdf_url":null,"source":{"id":"https://openalex.org/S4306525036","display_name":"PubMed","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I1299303238","host_organization_name":"National Institutes of Health","host_organization_lineage":["https://openalex.org/I1299303238"],"host_organization_lineage_names":[],"type":"repository"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Bioinformatics (Oxford, England)","raw_type":null},{"id":"pmh:oai:pure.atira.dk:openaire_cris_publications/62a459d5-958e-4ba3-b582-ba2b6a7d64bf","is_oa":false,"landing_page_url":"https://research.manchester.ac.uk/en/publications/62a459d5-958e-4ba3-b582-ba2b6a7d64bf","pdf_url":null,"source":{"id":"https://openalex.org/S4306400662","display_name":"Research Explorer (The University of Manchester)","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I28407311","host_organization_name":"University of Manchester","host_organization_lineage":["https://openalex.org/I28407311"],"host_organization_lineage_names":[],"type":"repository"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Kala\u0161, M, Puntervoll, P, Joseph, A, Barta\u0161evi\u010diute, E, T\u00f6pfer, A, Venkataraman, P, Pettifer, S, Bryne, J C, Ison, J, Blanchet, C, Rapacki, K & Jonassen, I 2010, 'BioXSD: The common data-exchange format for everyday bioinformatics web services', Bioinformatics, vol. 26, no. 18, btq391, pp. 540-546. https://doi.org/10.1093/bioinformatics/btq391","raw_type":"info:eu-repo/semantics/publishedVersion"},{"id":"pmh:oai:pure.atira.dk:openaire_cris_publications/84e925c6-4df4-416f-887f-d844cddb1be0","is_oa":false,"landing_page_url":"https://research.manchester.ac.uk/en/publications/84e925c6-4df4-416f-887f-d844cddb1be0","pdf_url":null,"source":{"id":"https://openalex.org/S4306400662","display_name":"Research Explorer (The University of Manchester)","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I28407311","host_organization_name":"University of Manchester","host_organization_lineage":["https://openalex.org/I28407311"],"host_organization_lineage_names":[],"type":"repository"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Kala\u0161, M, Puntervoll, P, Joseph, A, Barta\u0161evi\u010diute, E, T\u00f6pfer, A, Venkataraman, P, Pettifer, S, Bryne, J C, Ison, J, Blanchet, C, Rapacki, K & Jonassen, I 2010, BioXSD: The common data-exchange format for everyday bioinformatics web services. in Bioinformatics|Bioinformatics. vol. 26, pp. 540-546. https://doi.org/10.1093/bioinformatics/btq391","raw_type":"info:eu-repo/semantics/publishedVersion"},{"id":"pmh:oai:pubmedcentral.nih.gov:2935419","is_oa":true,"landing_page_url":"http://doi.org/10.1093/bioinformatics/btq391","pdf_url":null,"source":{"id":"https://openalex.org/S2764455111","display_name":"PubMed Central","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I1299303238","host_organization_name":"National Institutes of Health","host_organization_lineage":["https://openalex.org/I1299303238"],"host_organization_lineage_names":[],"type":"repository"},"license":null,"license_id":null,"version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":"Bioinformatics","raw_type":"Text"},{"id":"pmh:oai:pure.atira.dk:publications/62a459d5-958e-4ba3-b582-ba2b6a7d64bf","is_oa":false,"landing_page_url":"https://www.research.manchester.ac.uk/portal/en/publications/bioxsd-the-common-dataexchange-format-for-everyday-bioinformatics-web-services(62a459d5-958e-4ba3-b582-ba2b6a7d64bf).html","pdf_url":null,"source":{"id":"https://openalex.org/S4306400662","display_name":"Research Explorer (The University of Manchester)","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I28407311","host_organization_name":"University of Manchester","host_organization_lineage":["https://openalex.org/I28407311"],"host_organization_lineage_names":[],"type":"repository"},"license":null,"license_id":null,"version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":"Kala\u0161, M, Puntervoll, P, Joseph, A, Barta\u0161evi\u010diute, E, T\u00f6pfer, A, Venkataraman, P, Pettifer, S, Bryne, J C, Ison, J, Blanchet, C, Rapacki, K & Jonassen, I 2010, 'BioXSD: The common data-exchange format for everyday bioinformatics web services', Bioinformatics, vol. 26, no. 18, btq391, pp. 540-546. https://doi.org/10.1093/bioinformatics/btq391","raw_type":"info:eu-repo/semantics/publishedVersion"},{"id":"pmh:oai:pure.atira.dk:publications/84e925c6-4df4-416f-887f-d844cddb1be0","is_oa":false,"landing_page_url":"https://www.research.manchester.ac.uk/portal/en/publications/bioxsd-the-common-dataexchange-format-for-everyday-bioinformatics-web-services(84e925c6-4df4-416f-887f-d844cddb1be0).html","pdf_url":null,"source":{"id":"https://openalex.org/S4306400662","display_name":"Research Explorer (The University of Manchester)","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I28407311","host_organization_name":"University of Manchester","host_organization_lineage":["https://openalex.org/I28407311"],"host_organization_lineage_names":[],"type":"repository"},"license":null,"license_id":null,"version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":"Kala\u0161, M, Puntervoll, P, Joseph, A, Barta\u0161evi\u010diute, E, T\u00f6pfer, A, Venkataraman, P, Pettifer, S, Bryne, J C, Ison, J, Blanchet, C, Rapacki, K & Jonassen, I 2010, BioXSD: The common data-exchange format for everyday bioinformatics web services. in Bioinformatics|Bioinformatics. vol. 26, pp. 540-546. https://doi.org/10.1093/bioinformatics/btq391","raw_type":"info:eu-repo/semantics/publishedVersion"}],"best_oa_location":{"id":"doi:10.1093/bioinformatics/btq391","is_oa":true,"landing_page_url":"https://doi.org/10.1093/bioinformatics/btq391","pdf_url":"https://academic.oup.com/bioinformatics/article-pdf/26/18/i540/541290/btq391.pdf","source":{"id":"https://openalex.org/S52395412","display_name":"Bioinformatics","issn_l":"1367-4803","issn":["1367-4803","1367-4811"],"is_oa":false,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310311648","host_organization_name":"Oxford University Press","host_organization_lineage":["https://openalex.org/P4310311648","https://openalex.org/P4310311647"],"host_organization_lineage_names":["Oxford University Press","University of Oxford"],"type":"journal"},"license":"cc-by-nc","license_id":"https://openalex.org/licenses/cc-by-nc","version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Bioinformatics","raw_type":"journal-article"},"sustainable_development_goals":[{"score":0.4699999988079071,"display_name":"Responsible consumption and production","id":"https://metadata.un.org/sdg/12"}],"awards":[],"funders":[],"has_content":{"grobid_xml":true,"pdf":true},"content_urls":{"pdf":"https://content.openalex.org/works/W2127770193.pdf","grobid_xml":"https://content.openalex.org/works/W2127770193.grobid-xml"},"referenced_works_count":29,"referenced_works":["https://openalex.org/W1486283310","https://openalex.org/W1491040459","https://openalex.org/W1528893134","https://openalex.org/W1974754433","https://openalex.org/W1996901532","https://openalex.org/W1996902131","https://openalex.org/W2006933206","https://openalex.org/W2015936607","https://openalex.org/W2040704692","https://openalex.org/W2054251921","https://openalex.org/W2055043387","https://openalex.org/W2072229457","https://openalex.org/W2100434585","https://openalex.org/W2103017472","https://openalex.org/W2106882534","https://openalex.org/W2108896751","https://openalex.org/W2120319799","https://openalex.org/W2123171788","https://openalex.org/W2132247062","https://openalex.org/W2137653635","https://openalex.org/W2138608730","https://openalex.org/W2144781426","https://openalex.org/W2150306348","https://openalex.org/W2150908245","https://openalex.org/W2159124857","https://openalex.org/W2162094394","https://openalex.org/W2772934464","https://openalex.org/W4211208250","https://openalex.org/W6631575564"],"related_works":["https://openalex.org/W3109801220","https://openalex.org/W2739449396","https://openalex.org/W4226114405","https://openalex.org/W2361266579","https://openalex.org/W2367669701","https://openalex.org/W2375904740","https://openalex.org/W2352293792","https://openalex.org/W2361478481","https://openalex.org/W2075484134","https://openalex.org/W2348779292"],"abstract_inverted_index":{"The":[0,17],"BioXSD":[1,27],"1.0":[2],"XML":[3],"Schema":[4],"is":[5],"freely":[6],"available":[7],"at":[8],"http://www.bioxsd.org/BioXSD-1.0.xsd":[9],"under":[10],"the":[11,54],"Creative":[12],"Commons":[13],"BY-ND":[14],"3.0":[15],"license.":[16],"http://bioxsd.org":[18],"web":[19,43],"page":[20],"offers":[21],"documentation,":[22],"examples":[23],"of":[24,41,50],"data":[25],"in":[26,34],"format,":[28],"example":[29],"workflows":[30],"with":[31],"source":[32],"codes":[33],"common":[35],"programming":[36],"languages,":[37],"an":[38],"updated":[39],"list":[40],"compatible":[42],"services":[44],"and":[45,47],"tools":[46],"a":[48],"repository":[49],"feature":[51],"requests":[52],"from":[53],"community.":[55]},"counts_by_year":[{"year":2018,"cited_by_count":1},{"year":2017,"cited_by_count":1},{"year":2016,"cited_by_count":1},{"year":2015,"cited_by_count":5},{"year":2014,"cited_by_count":7},{"year":2013,"cited_by_count":3},{"year":2012,"cited_by_count":2}],"updated_date":"2025-11-06T03:46:38.306776","created_date":"2025-10-10T00:00:00"}
