{"id":"https://openalex.org/W2153993827","doi":"https://doi.org/10.1093/bioinformatics/btq365","title":"Characteristics of 454 pyrosequencing data\u2014enabling realistic simulation with flowsim","display_name":"Characteristics of 454 pyrosequencing data\u2014enabling realistic simulation with flowsim","publication_year":2010,"publication_date":"2010-09-04","ids":{"openalex":"https://openalex.org/W2153993827","doi":"https://doi.org/10.1093/bioinformatics/btq365","mag":"2153993827","pmid":"https://pubmed.ncbi.nlm.nih.gov/20823302"},"language":"en","primary_location":{"id":"doi:10.1093/bioinformatics/btq365","is_oa":true,"landing_page_url":"https://doi.org/10.1093/bioinformatics/btq365","pdf_url":"https://academic.oup.com/bioinformatics/article-pdf/26/18/i420/48858732/bioinformatics_26_18_i420.pdf","source":{"id":"https://openalex.org/S52395412","display_name":"Bioinformatics","issn_l":"1367-4803","issn":["1367-4803","1367-4811"],"is_oa":false,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310311648","host_organization_name":"Oxford University Press","host_organization_lineage":["https://openalex.org/P4310311648","https://openalex.org/P4310311647"],"host_organization_lineage_names":["Oxford University Press","University of Oxford"],"type":"journal"},"license":"cc-by-nc","license_id":"https://openalex.org/licenses/cc-by-nc","version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Bioinformatics","raw_type":"journal-article"},"type":"article","indexed_in":["crossref","doaj","pubmed"],"open_access":{"is_oa":true,"oa_status":"hybrid","oa_url":"https://academic.oup.com/bioinformatics/article-pdf/26/18/i420/48858732/bioinformatics_26_18_i420.pdf","any_repository_has_fulltext":true},"authorships":[{"author_position":"first","author":{"id":"https://openalex.org/A5016699956","display_name":"Susanne Balzer","orcid":null},"institutions":[{"id":"https://openalex.org/I2802153510","display_name":"Norwegian Institute of Marine Research","ror":"https://ror.org/05vg74d16","country_code":"NO","type":"facility","lineage":["https://openalex.org/I2802153510","https://openalex.org/I4210116418","https://openalex.org/I4210149801"]},{"id":"https://openalex.org/I4432739","display_name":"University of Bergen","ror":"https://ror.org/03zga2b32","country_code":"NO","type":"education","lineage":["https://openalex.org/I4432739"]}],"countries":["NO"],"is_corresponding":true,"raw_author_name":"Susanne Balzer","raw_affiliation_strings":["1 Institute of Marine Research, PO Box 1870, N\u22125817, 2Department of Informatics, University of Bergen, PO Box 7803, N-5020, 3Computational Biology Unit, Bergen Center for Computational Science, Thorm\u00f8hlensgate 55, N-5008 and 4Department of Biology, University of Bergen, PO Box 7803, N-5020, Bergen"],"affiliations":[{"raw_affiliation_string":"1 Institute of Marine Research, PO Box 1870, N\u22125817, 2Department of Informatics, University of Bergen, PO Box 7803, N-5020, 3Computational Biology Unit, Bergen Center for Computational Science, Thorm\u00f8hlensgate 55, N-5008 and 4Department of Biology, University of Bergen, PO Box 7803, N-5020, Bergen","institution_ids":["https://openalex.org/I4432739","https://openalex.org/I2802153510"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5061545123","display_name":"Ketil Malde","orcid":"https://orcid.org/0000-0001-7381-1849"},"institutions":[{"id":"https://openalex.org/I4432739","display_name":"University of Bergen","ror":"https://ror.org/03zga2b32","country_code":"NO","type":"education","lineage":["https://openalex.org/I4432739"]},{"id":"https://openalex.org/I2802153510","display_name":"Norwegian Institute of Marine Research","ror":"https://ror.org/05vg74d16","country_code":"NO","type":"facility","lineage":["https://openalex.org/I2802153510","https://openalex.org/I4210116418","https://openalex.org/I4210149801"]}],"countries":["NO"],"is_corresponding":true,"raw_author_name":"Ketil Malde","raw_affiliation_strings":["1 Institute of Marine Research, PO Box 1870, N\u22125817, 2Department of Informatics, University of Bergen, PO Box 7803, N-5020, 3Computational Biology Unit, Bergen Center for Computational Science, Thorm\u00f8hlensgate 55, N-5008 and 4Department of Biology, University of Bergen, PO Box 7803, N-5020, Bergen"],"affiliations":[{"raw_affiliation_string":"1 Institute of Marine Research, PO Box 1870, N\u22125817, 2Department of Informatics, University of Bergen, PO Box 7803, N-5020, 3Computational Biology Unit, Bergen Center for Computational Science, Thorm\u00f8hlensgate 55, N-5008 and 4Department of Biology, University of Bergen, PO Box 7803, N-5020, Bergen","institution_ids":["https://openalex.org/I4432739","https://openalex.org/I2802153510"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5005529953","display_name":"Anders Lanz\u00e9n","orcid":"https://orcid.org/0000-0002-7138-6364"},"institutions":[{"id":"https://openalex.org/I4432739","display_name":"University of Bergen","ror":"https://ror.org/03zga2b32","country_code":"NO","type":"education","lineage":["https://openalex.org/I4432739"]},{"id":"https://openalex.org/I2802153510","display_name":"Norwegian Institute of Marine Research","ror":"https://ror.org/05vg74d16","country_code":"NO","type":"facility","lineage":["https://openalex.org/I2802153510","https://openalex.org/I4210116418","https://openalex.org/I4210149801"]}],"countries":["NO"],"is_corresponding":false,"raw_author_name":"Anders Lanz\u00e9n","raw_affiliation_strings":["1 Institute of Marine Research, PO Box 1870, N\u22125817, 2Department of Informatics, University of Bergen, PO Box 7803, N-5020, 3Computational Biology Unit, Bergen Center for Computational Science, Thorm\u00f8hlensgate 55, N-5008 and 4Department of Biology, University of Bergen, PO Box 7803, N-5020, Bergen"],"affiliations":[{"raw_affiliation_string":"1 Institute of Marine Research, PO Box 1870, N\u22125817, 2Department of Informatics, University of Bergen, PO Box 7803, N-5020, 3Computational Biology Unit, Bergen Center for Computational Science, Thorm\u00f8hlensgate 55, N-5008 and 4Department of Biology, University of Bergen, PO Box 7803, N-5020, Bergen","institution_ids":["https://openalex.org/I4432739","https://openalex.org/I2802153510"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5071136409","display_name":"Animesh Sharma","orcid":"https://orcid.org/0000-0002-8791-4635"},"institutions":[{"id":"https://openalex.org/I4432739","display_name":"University of Bergen","ror":"https://ror.org/03zga2b32","country_code":"NO","type":"education","lineage":["https://openalex.org/I4432739"]},{"id":"https://openalex.org/I2802153510","display_name":"Norwegian Institute of Marine Research","ror":"https://ror.org/05vg74d16","country_code":"NO","type":"facility","lineage":["https://openalex.org/I2802153510","https://openalex.org/I4210116418","https://openalex.org/I4210149801"]}],"countries":["NO"],"is_corresponding":false,"raw_author_name":"Animesh Sharma","raw_affiliation_strings":["1 Institute of Marine Research, PO Box 1870, N\u22125817, 2Department of Informatics, University of Bergen, PO Box 7803, N-5020, 3Computational Biology Unit, Bergen Center for Computational Science, Thorm\u00f8hlensgate 55, N-5008 and 4Department of Biology, University of Bergen, PO Box 7803, N-5020, Bergen"],"affiliations":[{"raw_affiliation_string":"1 Institute of Marine Research, PO Box 1870, N\u22125817, 2Department of Informatics, University of Bergen, PO Box 7803, N-5020, 3Computational Biology Unit, Bergen Center for Computational Science, Thorm\u00f8hlensgate 55, N-5008 and 4Department of Biology, University of Bergen, PO Box 7803, N-5020, Bergen","institution_ids":["https://openalex.org/I4432739","https://openalex.org/I2802153510"]}]},{"author_position":"last","author":{"id":"https://openalex.org/A5012964587","display_name":"Inge Jonassen","orcid":"https://orcid.org/0000-0003-4110-0748"},"institutions":[{"id":"https://openalex.org/I4432739","display_name":"University of Bergen","ror":"https://ror.org/03zga2b32","country_code":"NO","type":"education","lineage":["https://openalex.org/I4432739"]},{"id":"https://openalex.org/I2802153510","display_name":"Norwegian Institute of Marine Research","ror":"https://ror.org/05vg74d16","country_code":"NO","type":"facility","lineage":["https://openalex.org/I2802153510","https://openalex.org/I4210116418","https://openalex.org/I4210149801"]}],"countries":["NO"],"is_corresponding":false,"raw_author_name":"Inge Jonassen","raw_affiliation_strings":["1 Institute of Marine Research, PO Box 1870, N\u22125817, 2Department of Informatics, University of Bergen, PO Box 7803, N-5020, 3Computational Biology Unit, Bergen Center for Computational Science, Thorm\u00f8hlensgate 55, N-5008 and 4Department of Biology, University of Bergen, PO Box 7803, N-5020, Bergen"],"affiliations":[{"raw_affiliation_string":"1 Institute of Marine Research, PO Box 1870, N\u22125817, 2Department of Informatics, University of Bergen, PO Box 7803, N-5020, 3Computational Biology Unit, Bergen Center for Computational Science, Thorm\u00f8hlensgate 55, N-5008 and 4Department of Biology, University of Bergen, PO Box 7803, N-5020, Bergen","institution_ids":["https://openalex.org/I4432739","https://openalex.org/I2802153510"]}]}],"institutions":[],"countries_distinct_count":1,"institutions_distinct_count":5,"corresponding_author_ids":["https://openalex.org/A5016699956","https://openalex.org/A5061545123"],"corresponding_institution_ids":["https://openalex.org/I2802153510","https://openalex.org/I4432739"],"apc_list":{"value":3618,"currency":"USD","value_usd":3618},"apc_paid":{"value":3618,"currency":"USD","value_usd":3618},"fwci":8.4035,"has_fulltext":true,"cited_by_count":157,"citation_normalized_percentile":{"value":0.98451953,"is_in_top_1_percent":false,"is_in_top_10_percent":true},"cited_by_percentile_year":{"min":94,"max":100},"biblio":{"volume":"26","issue":"18","first_page":"i420","last_page":"i425"},"is_retracted":false,"is_paratext":false,"is_xpac":false,"primary_topic":{"id":"https://openalex.org/T10015","display_name":"Genomics and Phylogenetic Studies","score":0.996999979019165,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},"topics":[{"id":"https://openalex.org/T10015","display_name":"Genomics and Phylogenetic Studies","score":0.996999979019165,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},{"id":"https://openalex.org/T11791","display_name":"Microbial Community Ecology and Physiology","score":0.9911999702453613,"subfield":{"id":"https://openalex.org/subfields/2303","display_name":"Ecology"},"field":{"id":"https://openalex.org/fields/23","display_name":"Environmental Science"},"domain":{"id":"https://openalex.org/domains/3","display_name":"Physical Sciences"}},{"id":"https://openalex.org/T10878","display_name":"CRISPR and Genetic Engineering","score":0.9726999998092651,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}}],"keywords":[{"id":"https://openalex.org/keywords/pyrosequencing","display_name":"Pyrosequencing","score":0.95890212059021},{"id":"https://openalex.org/keywords/benchmarking","display_name":"Benchmarking","score":0.6076167821884155},{"id":"https://openalex.org/keywords/computer-science","display_name":"Computer science","score":0.6031664609909058},{"id":"https://openalex.org/keywords/sanger-sequencing","display_name":"Sanger sequencing","score":0.584654688835144},{"id":"https://openalex.org/keywords/set","display_name":"Set (abstract data type)","score":0.4644916355609894},{"id":"https://openalex.org/keywords/sequence","display_name":"Sequence (biology)","score":0.4638066291809082},{"id":"https://openalex.org/keywords/mit-license","display_name":"MIT License","score":0.45587295293807983},{"id":"https://openalex.org/keywords/dna-sequencing","display_name":"DNA sequencing","score":0.4366213381290436},{"id":"https://openalex.org/keywords/protocol","display_name":"Protocol (science)","score":0.43039843440055847},{"id":"https://openalex.org/keywords/license","display_name":"License","score":0.41408324241638184},{"id":"https://openalex.org/keywords/data-mining","display_name":"Data mining","score":0.3515890836715698},{"id":"https://openalex.org/keywords/biology","display_name":"Biology","score":0.22650381922721863},{"id":"https://openalex.org/keywords/genetics","display_name":"Genetics","score":0.1478308141231537},{"id":"https://openalex.org/keywords/dna","display_name":"DNA","score":0.1293671727180481},{"id":"https://openalex.org/keywords/operating-system","display_name":"Operating system","score":0.09611114859580994},{"id":"https://openalex.org/keywords/programming-language","display_name":"Programming language","score":0.07582101225852966}],"concepts":[{"id":"https://openalex.org/C125009961","wikidata":"https://www.wikidata.org/wiki/Q2342248","display_name":"Pyrosequencing","level":3,"score":0.95890212059021},{"id":"https://openalex.org/C86251818","wikidata":"https://www.wikidata.org/wiki/Q816754","display_name":"Benchmarking","level":2,"score":0.6076167821884155},{"id":"https://openalex.org/C41008148","wikidata":"https://www.wikidata.org/wiki/Q21198","display_name":"Computer science","level":0,"score":0.6031664609909058},{"id":"https://openalex.org/C76818968","wikidata":"https://www.wikidata.org/wiki/Q181940","display_name":"Sanger sequencing","level":4,"score":0.584654688835144},{"id":"https://openalex.org/C177264268","wikidata":"https://www.wikidata.org/wiki/Q1514741","display_name":"Set (abstract data type)","level":2,"score":0.4644916355609894},{"id":"https://openalex.org/C2778112365","wikidata":"https://www.wikidata.org/wiki/Q3511065","display_name":"Sequence (biology)","level":2,"score":0.4638066291809082},{"id":"https://openalex.org/C174183944","wikidata":"https://www.wikidata.org/wiki/Q334661","display_name":"MIT License","level":3,"score":0.45587295293807983},{"id":"https://openalex.org/C51679486","wikidata":"https://www.wikidata.org/wiki/Q380546","display_name":"DNA sequencing","level":3,"score":0.4366213381290436},{"id":"https://openalex.org/C2780385302","wikidata":"https://www.wikidata.org/wiki/Q367158","display_name":"Protocol (science)","level":3,"score":0.43039843440055847},{"id":"https://openalex.org/C2780560020","wikidata":"https://www.wikidata.org/wiki/Q79719","display_name":"License","level":2,"score":0.41408324241638184},{"id":"https://openalex.org/C124101348","wikidata":"https://www.wikidata.org/wiki/Q172491","display_name":"Data mining","level":1,"score":0.3515890836715698},{"id":"https://openalex.org/C86803240","wikidata":"https://www.wikidata.org/wiki/Q420","display_name":"Biology","level":0,"score":0.22650381922721863},{"id":"https://openalex.org/C54355233","wikidata":"https://www.wikidata.org/wiki/Q7162","display_name":"Genetics","level":1,"score":0.1478308141231537},{"id":"https://openalex.org/C552990157","wikidata":"https://www.wikidata.org/wiki/Q7430","display_name":"DNA","level":2,"score":0.1293671727180481},{"id":"https://openalex.org/C111919701","wikidata":"https://www.wikidata.org/wiki/Q9135","display_name":"Operating system","level":1,"score":0.09611114859580994},{"id":"https://openalex.org/C199360897","wikidata":"https://www.wikidata.org/wiki/Q9143","display_name":"Programming language","level":1,"score":0.07582101225852966},{"id":"https://openalex.org/C142724271","wikidata":"https://www.wikidata.org/wiki/Q7208","display_name":"Pathology","level":1,"score":0.0},{"id":"https://openalex.org/C162853370","wikidata":"https://www.wikidata.org/wiki/Q39809","display_name":"Marketing","level":1,"score":0.0},{"id":"https://openalex.org/C104317684","wikidata":"https://www.wikidata.org/wiki/Q7187","display_name":"Gene","level":2,"score":0.0},{"id":"https://openalex.org/C71924100","wikidata":"https://www.wikidata.org/wiki/Q11190","display_name":"Medicine","level":0,"score":0.0},{"id":"https://openalex.org/C204787440","wikidata":"https://www.wikidata.org/wiki/Q188504","display_name":"Alternative medicine","level":2,"score":0.0},{"id":"https://openalex.org/C144133560","wikidata":"https://www.wikidata.org/wiki/Q4830453","display_name":"Business","level":0,"score":0.0}],"mesh":[{"descriptor_ui":"D000465","descriptor_name":"Algorithms","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D000465","descriptor_name":"Algorithms","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D000465","descriptor_name":"Algorithms","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D000818","descriptor_name":"Animals","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D000818","descriptor_name":"Animals","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D000818","descriptor_name":"Animals","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D001330","descriptor_name":"Electronic Data Processing","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D001330","descriptor_name":"Electronic Data Processing","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D001330","descriptor_name":"Electronic Data Processing","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D001483","descriptor_name":"Base Sequence","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D001483","descriptor_name":"Base Sequence","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D001483","descriptor_name":"Base Sequence","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D001492","descriptor_name":"Bass","qualifier_ui":"Q000235","qualifier_name":"genetics","is_major_topic":false},{"descriptor_ui":"D001492","descriptor_name":"Bass","qualifier_ui":"Q000235","qualifier_name":"genetics","is_major_topic":false},{"descriptor_ui":"D001492","descriptor_name":"Bass","qualifier_ui":"Q000235","qualifier_name":"genetics","is_major_topic":false},{"descriptor_ui":"D002874","descriptor_name":"Chromosome Mapping","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D002874","descriptor_name":"Chromosome Mapping","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D002874","descriptor_name":"Chromosome Mapping","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D003198","descriptor_name":"Computer Simulation","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D003198","descriptor_name":"Computer Simulation","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D003198","descriptor_name":"Computer Simulation","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D004269","descriptor_name":"DNA, Bacterial","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D004269","descriptor_name":"DNA, Bacterial","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D004269","descriptor_name":"DNA, Bacterial","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D004926","descriptor_name":"Escherichia coli","qualifier_ui":"Q000235","qualifier_name":"genetics","is_major_topic":false},{"descriptor_ui":"D004926","descriptor_name":"Escherichia coli","qualifier_ui":"Q000235","qualifier_name":"genetics","is_major_topic":false},{"descriptor_ui":"D004926","descriptor_name":"Escherichia coli","qualifier_ui":"Q000235","qualifier_name":"genetics","is_major_topic":false},{"descriptor_ui":"D017422","descriptor_name":"Sequence Analysis, DNA","qualifier_ui":"Q000295","qualifier_name":"instrumentation","is_major_topic":false},{"descriptor_ui":"D017422","descriptor_name":"Sequence Analysis, DNA","qualifier_ui":"Q000295","qualifier_name":"instrumentation","is_major_topic":false},{"descriptor_ui":"D017422","descriptor_name":"Sequence Analysis, DNA","qualifier_ui":"Q000295","qualifier_name":"instrumentation","is_major_topic":false},{"descriptor_ui":"D017422","descriptor_name":"Sequence Analysis, DNA","qualifier_ui":"Q000379","qualifier_name":"methods","is_major_topic":false},{"descriptor_ui":"D017422","descriptor_name":"Sequence Analysis, DNA","qualifier_ui":"Q000379","qualifier_name":"methods","is_major_topic":false},{"descriptor_ui":"D017422","descriptor_name":"Sequence Analysis, DNA","qualifier_ui":"Q000379","qualifier_name":"methods","is_major_topic":false},{"descriptor_ui":"D023281","descriptor_name":"Genomics","qualifier_ui":"Q000379","qualifier_name":"methods","is_major_topic":false},{"descriptor_ui":"D023281","descriptor_name":"Genomics","qualifier_ui":"Q000379","qualifier_name":"methods","is_major_topic":false},{"descriptor_ui":"D023281","descriptor_name":"Genomics","qualifier_ui":"Q000379","qualifier_name":"methods","is_major_topic":false}],"locations_count":5,"locations":[{"id":"doi:10.1093/bioinformatics/btq365","is_oa":true,"landing_page_url":"https://doi.org/10.1093/bioinformatics/btq365","pdf_url":"https://academic.oup.com/bioinformatics/article-pdf/26/18/i420/48858732/bioinformatics_26_18_i420.pdf","source":{"id":"https://openalex.org/S52395412","display_name":"Bioinformatics","issn_l":"1367-4803","issn":["1367-4803","1367-4811"],"is_oa":false,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310311648","host_organization_name":"Oxford University Press","host_organization_lineage":["https://openalex.org/P4310311648","https://openalex.org/P4310311647"],"host_organization_lineage_names":["Oxford University Press","University of Oxford"],"type":"journal"},"license":"cc-by-nc","license_id":"https://openalex.org/licenses/cc-by-nc","version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Bioinformatics","raw_type":"journal-article"},{"id":"pmid:20823302","is_oa":false,"landing_page_url":"https://pubmed.ncbi.nlm.nih.gov/20823302","pdf_url":null,"source":{"id":"https://openalex.org/S4306525036","display_name":"PubMed","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I1299303238","host_organization_name":"National Institutes of Health","host_organization_lineage":["https://openalex.org/I1299303238"],"host_organization_lineage_names":[],"type":"repository"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Bioinformatics (Oxford, England)","raw_type":null},{"id":"pmh:oai:CiteSeerX.psu:10.1.1.827.9554","is_oa":false,"landing_page_url":"http://citeseerx.ist.psu.edu/viewdoc/summary?doi=10.1.1.827.9554","pdf_url":null,"source":null,"license":null,"license_id":null,"version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":"http://bioinformatics.oxfordjournals.org/content/26/18/i420.full.pdf","raw_type":"text"},{"id":"pmh:oai:bora.uib.no:1956/7456","is_oa":true,"landing_page_url":"http://hdl.handle.net/1956/7456","pdf_url":null,"source":{"id":"https://openalex.org/S4306400085","display_name":"Bergen Open Research Archive (BORA) (University of Bergen)","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I4432739","host_organization_name":"University of Bergen","host_organization_lineage":["https://openalex.org/I4432739"],"host_organization_lineage_names":[],"type":"repository"},"license":"cc-by-nc","license_id":"https://openalex.org/licenses/cc-by-nc","version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":"Bioinformatics","raw_type":"info:eu-repo/semantics/other"},{"id":"pmh:oai:pubmedcentral.nih.gov:2935434","is_oa":true,"landing_page_url":"https://www.ncbi.nlm.nih.gov/pmc/articles/2935434","pdf_url":null,"source":{"id":"https://openalex.org/S2764455111","display_name":"PubMed Central","issn_l":null,"issn":null,"is_oa":true,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I1299303238","host_organization_name":"National Institutes of Health","host_organization_lineage":["https://openalex.org/I1299303238"],"host_organization_lineage_names":[],"type":"repository"},"license":null,"license_id":null,"version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":"Bioinformatics","raw_type":"Text"}],"best_oa_location":{"id":"doi:10.1093/bioinformatics/btq365","is_oa":true,"landing_page_url":"https://doi.org/10.1093/bioinformatics/btq365","pdf_url":"https://academic.oup.com/bioinformatics/article-pdf/26/18/i420/48858732/bioinformatics_26_18_i420.pdf","source":{"id":"https://openalex.org/S52395412","display_name":"Bioinformatics","issn_l":"1367-4803","issn":["1367-4803","1367-4811"],"is_oa":false,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310311648","host_organization_name":"Oxford University Press","host_organization_lineage":["https://openalex.org/P4310311648","https://openalex.org/P4310311647"],"host_organization_lineage_names":["Oxford University Press","University of Oxford"],"type":"journal"},"license":"cc-by-nc","license_id":"https://openalex.org/licenses/cc-by-nc","version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Bioinformatics","raw_type":"journal-article"},"sustainable_development_goals":[{"display_name":"Industry, innovation and infrastructure","score":0.41999998688697815,"id":"https://metadata.un.org/sdg/9"}],"awards":[],"funders":[{"id":"https://openalex.org/F4320306084","display_name":"U.S. Department of Energy","ror":"https://ror.org/01bj3aw27"},{"id":"https://openalex.org/F4320316170","display_name":"Joint Genome Institute","ror":"https://ror.org/04xm1d337"},{"id":"https://openalex.org/F4320320337","display_name":"University of Glasgow","ror":"https://ror.org/00vtgdb53"},{"id":"https://openalex.org/F4320323299","display_name":"Norges Forskningsr\u00e5d","ror":"https://ror.org/00epmv149"}],"has_content":{"grobid_xml":true,"pdf":true},"content_urls":{"pdf":"https://content.openalex.org/works/W2153993827.pdf","grobid_xml":"https://content.openalex.org/works/W2153993827.grobid-xml"},"referenced_works_count":18,"referenced_works":["https://openalex.org/W1559484989","https://openalex.org/W1986473212","https://openalex.org/W2000072710","https://openalex.org/W2037532428","https://openalex.org/W2048818637","https://openalex.org/W2055043387","https://openalex.org/W2059670608","https://openalex.org/W2090087224","https://openalex.org/W2096634299","https://openalex.org/W2113814080","https://openalex.org/W2116895571","https://openalex.org/W2128114769","https://openalex.org/W2129067616","https://openalex.org/W2130077037","https://openalex.org/W2134153749","https://openalex.org/W6633795506","https://openalex.org/W6672966426","https://openalex.org/W6677184496"],"related_works":["https://openalex.org/W2413853260","https://openalex.org/W2152215405","https://openalex.org/W2086729134","https://openalex.org/W2349520025","https://openalex.org/W2024880418","https://openalex.org/W2226596076","https://openalex.org/W2160464112","https://openalex.org/W1970852420","https://openalex.org/W2001808934","https://openalex.org/W3030087352"],"abstract_inverted_index":{"Flowsim":[0],"is":[1],"freely":[2],"available":[3],"under":[4],"the":[5],"General":[6],"Public":[7],"License":[8],"from":[9],"http://blog.malde.org/index.php/flowsim/.":[10]},"counts_by_year":[{"year":2025,"cited_by_count":4},{"year":2024,"cited_by_count":2},{"year":2023,"cited_by_count":4},{"year":2022,"cited_by_count":6},{"year":2020,"cited_by_count":2},{"year":2019,"cited_by_count":5},{"year":2018,"cited_by_count":5},{"year":2017,"cited_by_count":10},{"year":2016,"cited_by_count":10},{"year":2015,"cited_by_count":25},{"year":2014,"cited_by_count":22},{"year":2013,"cited_by_count":27},{"year":2012,"cited_by_count":16}],"updated_date":"2026-04-21T08:09:41.155169","created_date":"2025-10-10T00:00:00"}
