{"id":"https://openalex.org/W2129785061","doi":"https://doi.org/10.1093/bioinformatics/btq351","title":"BigWig and BigBed: enabling browsing of large distributed datasets","display_name":"BigWig and BigBed: enabling browsing of large distributed datasets","publication_year":2010,"publication_date":"2010-07-17","ids":{"openalex":"https://openalex.org/W2129785061","doi":"https://doi.org/10.1093/bioinformatics/btq351","mag":"2129785061","pmid":"https://pubmed.ncbi.nlm.nih.gov/20639541"},"language":"en","primary_location":{"id":"doi:10.1093/bioinformatics/btq351","is_oa":true,"landing_page_url":"https://doi.org/10.1093/bioinformatics/btq351","pdf_url":"https://academic.oup.com/bioinformatics/article-pdf/26/17/2204/48855290/bioinformatics_26_17_2204.pdf","source":{"id":"https://openalex.org/S52395412","display_name":"Bioinformatics","issn_l":"1367-4803","issn":["1367-4803","1367-4811"],"is_oa":false,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310311648","host_organization_name":"Oxford University Press","host_organization_lineage":["https://openalex.org/P4310311648","https://openalex.org/P4310311647"],"host_organization_lineage_names":["Oxford University Press","University of Oxford"],"type":"journal"},"license":"cc-by-nc","license_id":"https://openalex.org/licenses/cc-by-nc","version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Bioinformatics","raw_type":"journal-article"},"type":"article","indexed_in":["crossref","doaj","pubmed"],"open_access":{"is_oa":true,"oa_status":"hybrid","oa_url":"https://academic.oup.com/bioinformatics/article-pdf/26/17/2204/48855290/bioinformatics_26_17_2204.pdf","any_repository_has_fulltext":true},"authorships":[{"author_position":"first","author":{"id":"https://openalex.org/A5105297342","display_name":"W. James Kent","orcid":null},"institutions":[{"id":"https://openalex.org/I185103710","display_name":"University of California, Santa Cruz","ror":"https://ror.org/03s65by71","country_code":"US","type":"education","lineage":["https://openalex.org/I185103710"]}],"countries":["US"],"is_corresponding":false,"raw_author_name":"W. J. Kent","raw_affiliation_strings":["Center for Biomolecular Science and Engineering, School of Engineering, University of California, Santa Cruz (UCSC), Santa Cruz, CA 95064, USA"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Center for Biomolecular Science and Engineering, School of Engineering, University of California, Santa Cruz (UCSC), Santa Cruz, CA 95064, USA","institution_ids":["https://openalex.org/I185103710"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5034427205","display_name":"Ann S. Zweig","orcid":null},"institutions":[{"id":"https://openalex.org/I185103710","display_name":"University of California, Santa Cruz","ror":"https://ror.org/03s65by71","country_code":"US","type":"education","lineage":["https://openalex.org/I185103710"]}],"countries":["US"],"is_corresponding":true,"raw_author_name":"A. S. Zweig","raw_affiliation_strings":["Center for Biomolecular Science and Engineering, School of Engineering, University of California, Santa Cruz (UCSC), Santa Cruz, CA 95064, USA"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Center for Biomolecular Science and Engineering, School of Engineering, University of California, Santa Cruz (UCSC), Santa Cruz, CA 95064, USA","institution_ids":["https://openalex.org/I185103710"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5112726685","display_name":"G. P. Barber","orcid":null},"institutions":[{"id":"https://openalex.org/I185103710","display_name":"University of California, Santa Cruz","ror":"https://ror.org/03s65by71","country_code":"US","type":"education","lineage":["https://openalex.org/I185103710"]}],"countries":["US"],"is_corresponding":false,"raw_author_name":"G. Barber","raw_affiliation_strings":["Center for Biomolecular Science and Engineering, School of Engineering, University of California, Santa Cruz (UCSC), Santa Cruz, CA 95064, USA"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Center for Biomolecular Science and Engineering, School of Engineering, University of California, Santa Cruz (UCSC), Santa Cruz, CA 95064, USA","institution_ids":["https://openalex.org/I185103710"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5031905987","display_name":"Angie S. Hinrichs","orcid":"https://orcid.org/0000-0002-1697-1130"},"institutions":[{"id":"https://openalex.org/I185103710","display_name":"University of California, Santa Cruz","ror":"https://ror.org/03s65by71","country_code":"US","type":"education","lineage":["https://openalex.org/I185103710"]}],"countries":["US"],"is_corresponding":false,"raw_author_name":"A. S. Hinrichs","raw_affiliation_strings":["Center for Biomolecular Science and Engineering, School of Engineering, University of California, Santa Cruz (UCSC), Santa Cruz, CA 95064, USA"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Center for Biomolecular Science and Engineering, School of Engineering, University of California, Santa Cruz (UCSC), Santa Cruz, CA 95064, USA","institution_ids":["https://openalex.org/I185103710"]}]},{"author_position":"last","author":{"id":"https://openalex.org/A5076917634","display_name":"Donna Karolchik","orcid":null},"institutions":[{"id":"https://openalex.org/I185103710","display_name":"University of California, Santa Cruz","ror":"https://ror.org/03s65by71","country_code":"US","type":"education","lineage":["https://openalex.org/I185103710"]}],"countries":["US"],"is_corresponding":false,"raw_author_name":"D. Karolchik","raw_affiliation_strings":["Center for Biomolecular Science and Engineering, School of Engineering, University of California, Santa Cruz (UCSC), Santa Cruz, CA 95064, USA"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Center for Biomolecular Science and Engineering, School of Engineering, University of California, Santa Cruz (UCSC), Santa Cruz, CA 95064, USA","institution_ids":["https://openalex.org/I185103710"]}]}],"institutions":[],"countries_distinct_count":1,"institutions_distinct_count":5,"corresponding_author_ids":["https://openalex.org/A5034427205"],"corresponding_institution_ids":["https://openalex.org/I185103710"],"apc_list":{"value":3618,"currency":"USD","value_usd":3618},"apc_paid":{"value":3618,"currency":"USD","value_usd":3618},"fwci":7.3527,"has_fulltext":true,"cited_by_count":1469,"citation_normalized_percentile":{"value":0.9801016,"is_in_top_1_percent":false,"is_in_top_10_percent":true},"cited_by_percentile_year":{"min":99,"max":100},"biblio":{"volume":"26","issue":"17","first_page":"2204","last_page":"2207"},"is_retracted":false,"is_paratext":false,"is_xpac":false,"primary_topic":{"id":"https://openalex.org/T10015","display_name":"Genomics and Phylogenetic Studies","score":0.8457000255584717,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},"topics":[{"id":"https://openalex.org/T10015","display_name":"Genomics and Phylogenetic Studies","score":0.8457000255584717,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},{"id":"https://openalex.org/T13937","display_name":"Genetics, Bioinformatics, and Biomedical Research","score":0.030799999833106995,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},{"id":"https://openalex.org/T11986","display_name":"Scientific Computing and Data Management","score":0.02410000003874302,"subfield":{"id":"https://openalex.org/subfields/1802","display_name":"Information Systems and Management"},"field":{"id":"https://openalex.org/fields/18","display_name":"Decision Sciences"},"domain":{"id":"https://openalex.org/domains/2","display_name":"Social Sciences"}}],"keywords":[{"id":"https://openalex.org/keywords/genome-browser","display_name":"Genome browser","score":0.9000246524810791},{"id":"https://openalex.org/keywords/computer-science","display_name":"Computer science","score":0.7854164838790894},{"id":"https://openalex.org/keywords/os-x","display_name":"OS X","score":0.5980957746505737},{"id":"https://openalex.org/keywords/unix","display_name":"Unix","score":0.5958852767944336},{"id":"https://openalex.org/keywords/software","display_name":"Software","score":0.5452131032943726},{"id":"https://openalex.org/keywords/visualization","display_name":"Visualization","score":0.5037717223167419},{"id":"https://openalex.org/keywords/operating-system","display_name":"Operating system","score":0.4945542514324188},{"id":"https://openalex.org/keywords/byte","display_name":"Byte","score":0.49311062693595886},{"id":"https://openalex.org/keywords/the-internet","display_name":"The Internet","score":0.4310033917427063},{"id":"https://openalex.org/keywords/source-code","display_name":"Source code","score":0.4134077727794647},{"id":"https://openalex.org/keywords/world-wide-web","display_name":"World Wide Web","score":0.3646465539932251},{"id":"https://openalex.org/keywords/genome","display_name":"Genome","score":0.3281971216201782},{"id":"https://openalex.org/keywords/genomics","display_name":"Genomics","score":0.19101199507713318},{"id":"https://openalex.org/keywords/data-mining","display_name":"Data mining","score":0.1484590470790863},{"id":"https://openalex.org/keywords/biology","display_name":"Biology","score":0.09357422590255737}],"concepts":[{"id":"https://openalex.org/C2781148417","wikidata":"https://www.wikidata.org/wiki/Q5533486","display_name":"Genome browser","level":5,"score":0.9000246524810791},{"id":"https://openalex.org/C41008148","wikidata":"https://www.wikidata.org/wiki/Q21198","display_name":"Computer science","level":0,"score":0.7854164838790894},{"id":"https://openalex.org/C515153823","wikidata":"https://www.wikidata.org/wiki/Q14116","display_name":"OS X","level":3,"score":0.5980957746505737},{"id":"https://openalex.org/C112968700","wikidata":"https://www.wikidata.org/wiki/Q11368","display_name":"Unix","level":3,"score":0.5958852767944336},{"id":"https://openalex.org/C2777904410","wikidata":"https://www.wikidata.org/wiki/Q7397","display_name":"Software","level":2,"score":0.5452131032943726},{"id":"https://openalex.org/C36464697","wikidata":"https://www.wikidata.org/wiki/Q451553","display_name":"Visualization","level":2,"score":0.5037717223167419},{"id":"https://openalex.org/C111919701","wikidata":"https://www.wikidata.org/wiki/Q9135","display_name":"Operating system","level":1,"score":0.4945542514324188},{"id":"https://openalex.org/C43364308","wikidata":"https://www.wikidata.org/wiki/Q8799","display_name":"Byte","level":2,"score":0.49311062693595886},{"id":"https://openalex.org/C110875604","wikidata":"https://www.wikidata.org/wiki/Q75","display_name":"The Internet","level":2,"score":0.4310033917427063},{"id":"https://openalex.org/C43126263","wikidata":"https://www.wikidata.org/wiki/Q128751","display_name":"Source code","level":2,"score":0.4134077727794647},{"id":"https://openalex.org/C136764020","wikidata":"https://www.wikidata.org/wiki/Q466","display_name":"World Wide Web","level":1,"score":0.3646465539932251},{"id":"https://openalex.org/C141231307","wikidata":"https://www.wikidata.org/wiki/Q7020","display_name":"Genome","level":3,"score":0.3281971216201782},{"id":"https://openalex.org/C189206191","wikidata":"https://www.wikidata.org/wiki/Q222046","display_name":"Genomics","level":4,"score":0.19101199507713318},{"id":"https://openalex.org/C124101348","wikidata":"https://www.wikidata.org/wiki/Q172491","display_name":"Data mining","level":1,"score":0.1484590470790863},{"id":"https://openalex.org/C86803240","wikidata":"https://www.wikidata.org/wiki/Q420","display_name":"Biology","level":0,"score":0.09357422590255737},{"id":"https://openalex.org/C104317684","wikidata":"https://www.wikidata.org/wiki/Q7187","display_name":"Gene","level":2,"score":0.0},{"id":"https://openalex.org/C55493867","wikidata":"https://www.wikidata.org/wiki/Q7094","display_name":"Biochemistry","level":1,"score":0.0}],"mesh":[{"descriptor_ui":"D012984","descriptor_name":"Software","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D012984","descriptor_name":"Software","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D012984","descriptor_name":"Software","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D019295","descriptor_name":"Computational Biology","qualifier_ui":"Q000379","qualifier_name":"methods","is_major_topic":false},{"descriptor_ui":"D019295","descriptor_name":"Computational Biology","qualifier_ui":"Q000379","qualifier_name":"methods","is_major_topic":false},{"descriptor_ui":"D019295","descriptor_name":"Computational Biology","qualifier_ui":"Q000379","qualifier_name":"methods","is_major_topic":false},{"descriptor_ui":"D020407","descriptor_name":"Internet","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D020407","descriptor_name":"Internet","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D020407","descriptor_name":"Internet","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D023281","descriptor_name":"Genomics","qualifier_ui":"Q000379","qualifier_name":"methods","is_major_topic":false},{"descriptor_ui":"D023281","descriptor_name":"Genomics","qualifier_ui":"Q000379","qualifier_name":"methods","is_major_topic":false},{"descriptor_ui":"D023281","descriptor_name":"Genomics","qualifier_ui":"Q000379","qualifier_name":"methods","is_major_topic":false},{"descriptor_ui":"D044962","descriptor_name":"Data Compression","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D044962","descriptor_name":"Data Compression","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D044962","descriptor_name":"Data Compression","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D057225","descriptor_name":"Data Mining","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D057225","descriptor_name":"Data Mining","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D057225","descriptor_name":"Data Mining","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true}],"locations_count":3,"locations":[{"id":"doi:10.1093/bioinformatics/btq351","is_oa":true,"landing_page_url":"https://doi.org/10.1093/bioinformatics/btq351","pdf_url":"https://academic.oup.com/bioinformatics/article-pdf/26/17/2204/48855290/bioinformatics_26_17_2204.pdf","source":{"id":"https://openalex.org/S52395412","display_name":"Bioinformatics","issn_l":"1367-4803","issn":["1367-4803","1367-4811"],"is_oa":false,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310311648","host_organization_name":"Oxford University Press","host_organization_lineage":["https://openalex.org/P4310311648","https://openalex.org/P4310311647"],"host_organization_lineage_names":["Oxford University Press","University of Oxford"],"type":"journal"},"license":"cc-by-nc","license_id":"https://openalex.org/licenses/cc-by-nc","version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Bioinformatics","raw_type":"journal-article"},{"id":"pmid:20639541","is_oa":false,"landing_page_url":"https://pubmed.ncbi.nlm.nih.gov/20639541","pdf_url":null,"source":{"id":"https://openalex.org/S4306525036","display_name":"PubMed","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I1299303238","host_organization_name":"National Institutes of Health","host_organization_lineage":["https://openalex.org/I1299303238"],"host_organization_lineage_names":[],"type":"repository"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Bioinformatics (Oxford, England)","raw_type":null},{"id":"pmh:oai:pubmedcentral.nih.gov:2922891","is_oa":true,"landing_page_url":"https://www.ncbi.nlm.nih.gov/pmc/articles/2922891","pdf_url":null,"source":{"id":"https://openalex.org/S2764455111","display_name":"PubMed Central","issn_l":null,"issn":null,"is_oa":true,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I1299303238","host_organization_name":"National Institutes of Health","host_organization_lineage":["https://openalex.org/I1299303238"],"host_organization_lineage_names":[],"type":"repository"},"license":null,"license_id":null,"version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":"Bioinformatics","raw_type":"Text"}],"best_oa_location":{"id":"doi:10.1093/bioinformatics/btq351","is_oa":true,"landing_page_url":"https://doi.org/10.1093/bioinformatics/btq351","pdf_url":"https://academic.oup.com/bioinformatics/article-pdf/26/17/2204/48855290/bioinformatics_26_17_2204.pdf","source":{"id":"https://openalex.org/S52395412","display_name":"Bioinformatics","issn_l":"1367-4803","issn":["1367-4803","1367-4811"],"is_oa":false,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310311648","host_organization_name":"Oxford University Press","host_organization_lineage":["https://openalex.org/P4310311648","https://openalex.org/P4310311647"],"host_organization_lineage_names":["Oxford University Press","University of Oxford"],"type":"journal"},"license":"cc-by-nc","license_id":"https://openalex.org/licenses/cc-by-nc","version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Bioinformatics","raw_type":"journal-article"},"sustainable_development_goals":[{"score":0.4099999964237213,"display_name":"Partnerships for the goals","id":"https://metadata.un.org/sdg/17"}],"awards":[],"funders":[{"id":"https://openalex.org/F4320306082","display_name":"Howard Hughes Medical Institute","ror":"https://ror.org/006w34k90"},{"id":"https://openalex.org/F4320337348","display_name":"National Human Genome Research Institute","ror":"https://ror.org/00baak391"}],"has_content":{"pdf":true,"grobid_xml":true},"content_urls":{"pdf":"https://content.openalex.org/works/W2129785061.pdf","grobid_xml":"https://content.openalex.org/works/W2129785061.grobid-xml"},"referenced_works_count":10,"referenced_works":["https://openalex.org/W1786509598","https://openalex.org/W2108234281","https://openalex.org/W2118269922","https://openalex.org/W2123056040","https://openalex.org/W2127640118","https://openalex.org/W2128016314","https://openalex.org/W2918025614","https://openalex.org/W4300068876","https://openalex.org/W6637958989","https://openalex.org/W7043153843"],"related_works":["https://openalex.org/W634263678","https://openalex.org/W1769567533","https://openalex.org/W1698445912","https://openalex.org/W2471374216","https://openalex.org/W2788290641","https://openalex.org/W646563222","https://openalex.org/W2382986841","https://openalex.org/W2482337249","https://openalex.org/W607584478","https://openalex.org/W2129785061"],"abstract_inverted_index":{"Abstract":[0],"Summary:":[1],"BigWig":[2,99,151],"and":[3,49,51,58,61,94,100,103,116,130,152,170,175],"BigBed":[4,101,153],"files":[5,10],"are":[6,156],"compressed":[7],"binary":[8],"indexed":[9],"containing":[11],"data":[12,69,91,167],"at":[13,109,125,140,158],"several":[14],"resolutions":[15],"that":[16,40],"allow":[17],"the":[18,27,68,73,81,98,114,150],"high-performance":[19],"display":[20],"of":[21,43,46,149,165],"next-generation":[22],"sequencing":[23],"experiment":[24],"results":[25],"in":[26,128],"UCSC":[28,135,166],"Genome":[29,136],"Browser.":[30],"The":[31,134],"visualization":[32,117],"is":[33,77,119,138],"implemented":[34,127],"using":[35],"a":[36,65],"multi-layered":[37],"software":[38,118],"approach":[39],"takes":[41],"advantage":[42],"specific":[44],"capabilities":[45],"web-based":[47],"protocols":[48],"Linux":[50],"UNIX":[52],"operating":[53],"systems":[54],"files,":[55],"R":[56],"trees":[57],"various":[59],"indexing":[60],"compression":[62],"tricks.":[63],"As":[64],"result,":[66],"only":[67],"needed":[70],"to":[71,88],"support":[72],"current":[74],"browser":[75],"view":[76],"transmitted":[78],"rather":[79],"than":[80],"entire":[82],"file,":[83],"enabling":[84],"fast":[85],"remote":[86],"access":[87],"large":[89],"distributed":[90],"sets.":[92],"Availability":[93],"implementation:":[95],"Binaries":[96],"for":[97,113,122],"creation":[102,115],"parsing":[104],"utilities":[105],"may":[106],"be":[107],"downloaded":[108],"http://hgdownload.cse.ucsc.edu/admin/exe/linux.x86_64/.":[110],"Source":[111],"code":[112],"freely":[120],"available":[121,139,157],"non-commercial":[123],"use":[124],"http://hgdownload.cse.ucsc.edu/admin/jksrc.zip,":[126],"C":[129],"supported":[131],"on":[132],"Linux.":[133],"Browser":[137],"http://genome.ucsc.edu":[141],"Contact:":[142],"ann@soe.ucsc.edu":[143],"Supplementary":[144,146],"information:":[145],"byte-level":[147],"details":[148],"file":[154,168],"formats":[155,169],"Bioinformatics":[159],"online.":[160],"For":[161],"an":[162],"in-depth":[163],"description":[164],"custom":[171],"tracks,":[172],"see":[173],"http://genome.ucsc.edu/FAQ/FAQformat.html":[174],"http://genome.ucsc.edu/goldenPath/help/hgTracksHelp.html":[176]},"counts_by_year":[{"year":2026,"cited_by_count":76},{"year":2025,"cited_by_count":157},{"year":2024,"cited_by_count":158},{"year":2023,"cited_by_count":174},{"year":2022,"cited_by_count":152},{"year":2021,"cited_by_count":180},{"year":2020,"cited_by_count":149},{"year":2019,"cited_by_count":105},{"year":2018,"cited_by_count":88},{"year":2017,"cited_by_count":67},{"year":2016,"cited_by_count":41},{"year":2015,"cited_by_count":35},{"year":2014,"cited_by_count":31},{"year":2013,"cited_by_count":18},{"year":2012,"cited_by_count":16}],"updated_date":"2026-06-19T17:40:00.097472","created_date":"2025-10-10T00:00:00"}
