{"id":"https://openalex.org/W2105345473","doi":"https://doi.org/10.1093/bioinformatics/btq348","title":"Biological knowledge bases using Wikis: combining the flexibility of Wikis with the structure of databases","display_name":"Biological knowledge bases using Wikis: combining the flexibility of Wikis with the structure of databases","publication_year":2010,"publication_date":"2010-06-30","ids":{"openalex":"https://openalex.org/W2105345473","doi":"https://doi.org/10.1093/bioinformatics/btq348","mag":"2105345473","pmid":"https://pubmed.ncbi.nlm.nih.gov/20591906"},"language":"en","primary_location":{"id":"doi:10.1093/bioinformatics/btq348","is_oa":true,"landing_page_url":"https://doi.org/10.1093/bioinformatics/btq348","pdf_url":"https://academic.oup.com/bioinformatics/article-pdf/26/17/2210/16894453/btq348.pdf","source":{"id":"https://openalex.org/S52395412","display_name":"Bioinformatics","issn_l":"1367-4803","issn":["1367-4803","1367-4811"],"is_oa":false,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310311648","host_organization_name":"Oxford University Press","host_organization_lineage":["https://openalex.org/P4310311648","https://openalex.org/P4310311647"],"host_organization_lineage_names":["Oxford University Press","University of Oxford"],"type":"journal"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Bioinformatics","raw_type":"journal-article"},"type":"article","indexed_in":["crossref","doaj","pubmed"],"open_access":{"is_oa":true,"oa_status":"bronze","oa_url":"https://academic.oup.com/bioinformatics/article-pdf/26/17/2210/16894453/btq348.pdf","any_repository_has_fulltext":false},"authorships":[{"author_position":"first","author":{"id":"https://openalex.org/A5104110262","display_name":"Sylvain Broh\u00e9e","orcid":null},"institutions":[{"id":"https://openalex.org/I17866349","display_name":"Universit\u00e9 F\u00e9d\u00e9rale de Toulouse Midi-Pyr\u00e9n\u00e9es","ror":"https://ror.org/004raaa70","country_code":"FR","type":"education","lineage":["https://openalex.org/I17866349"]},{"id":"https://openalex.org/I4210149702","display_name":"Laboratoire de Microbiologie et G\u00e9n\u00e9tique Mol\u00e9culaires","ror":"https://ror.org/04rrj3a80","country_code":"FR","type":"facility","lineage":["https://openalex.org/I1294671590","https://openalex.org/I1294671590","https://openalex.org/I134560555","https://openalex.org/I4210096427","https://openalex.org/I4210149702","https://openalex.org/I4405258862"]},{"id":"https://openalex.org/I99464096","display_name":"KU Leuven","ror":"https://ror.org/05f950310","country_code":"BE","type":"education","lineage":["https://openalex.org/I99464096"]},{"id":"https://openalex.org/I134560555","display_name":"Universit\u00e9 Toulouse III - Paul Sabatier","ror":"https://ror.org/02v6kpv12","country_code":"FR","type":"education","lineage":["https://openalex.org/I134560555","https://openalex.org/I4405258862"]}],"countries":["BE","FR"],"is_corresponding":true,"raw_author_name":"Sylvain Broh\u00e9e","raw_affiliation_strings":["1 ESAT-SCD. Katholieke Universiteit Leuven, Kasteelpark Arenberg 10, B-3001 Leuven, Belgium and 2Universit\u00e9 de Toulouse, UPS, Laboratoire de Microbiologie et G\u00e9n\u00e9tique Mol\u00e9culaire, Centre National de la Recherche Scientifique, F-31000 Toulouse, France"],"affiliations":[{"raw_affiliation_string":"1 ESAT-SCD. Katholieke Universiteit Leuven, Kasteelpark Arenberg 10, B-3001 Leuven, Belgium and 2Universit\u00e9 de Toulouse, UPS, Laboratoire de Microbiologie et G\u00e9n\u00e9tique Mol\u00e9culaire, Centre National de la Recherche Scientifique, F-31000 Toulouse, France","institution_ids":["https://openalex.org/I4210149702","https://openalex.org/I99464096","https://openalex.org/I17866349","https://openalex.org/I134560555"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5027931311","display_name":"Roland Barriot","orcid":"https://orcid.org/0000-0003-0298-2696"},"institutions":[{"id":"https://openalex.org/I99464096","display_name":"KU Leuven","ror":"https://ror.org/05f950310","country_code":"BE","type":"education","lineage":["https://openalex.org/I99464096"]},{"id":"https://openalex.org/I4210149702","display_name":"Laboratoire de Microbiologie et G\u00e9n\u00e9tique Mol\u00e9culaires","ror":"https://ror.org/04rrj3a80","country_code":"FR","type":"facility","lineage":["https://openalex.org/I1294671590","https://openalex.org/I1294671590","https://openalex.org/I134560555","https://openalex.org/I4210096427","https://openalex.org/I4210149702","https://openalex.org/I4405258862"]},{"id":"https://openalex.org/I17866349","display_name":"Universit\u00e9 F\u00e9d\u00e9rale de Toulouse Midi-Pyr\u00e9n\u00e9es","ror":"https://ror.org/004raaa70","country_code":"FR","type":"education","lineage":["https://openalex.org/I17866349"]},{"id":"https://openalex.org/I134560555","display_name":"Universit\u00e9 Toulouse III - Paul Sabatier","ror":"https://ror.org/02v6kpv12","country_code":"FR","type":"education","lineage":["https://openalex.org/I134560555","https://openalex.org/I4405258862"]}],"countries":["BE","FR"],"is_corresponding":false,"raw_author_name":"Roland Barriot","raw_affiliation_strings":["1 ESAT-SCD. Katholieke Universiteit Leuven, Kasteelpark Arenberg 10, B-3001 Leuven, Belgium and 2Universit\u00e9 de Toulouse, UPS, Laboratoire de Microbiologie et G\u00e9n\u00e9tique Mol\u00e9culaire, Centre National de la Recherche Scientifique, F-31000 Toulouse, France"],"affiliations":[{"raw_affiliation_string":"1 ESAT-SCD. Katholieke Universiteit Leuven, Kasteelpark Arenberg 10, B-3001 Leuven, Belgium and 2Universit\u00e9 de Toulouse, UPS, Laboratoire de Microbiologie et G\u00e9n\u00e9tique Mol\u00e9culaire, Centre National de la Recherche Scientifique, F-31000 Toulouse, France","institution_ids":["https://openalex.org/I4210149702","https://openalex.org/I99464096","https://openalex.org/I17866349","https://openalex.org/I134560555"]}]},{"author_position":"last","author":{"id":"https://openalex.org/A5041984163","display_name":"Yves Moreau","orcid":"https://orcid.org/0000-0002-4647-6560"},"institutions":[{"id":"https://openalex.org/I134560555","display_name":"Universit\u00e9 Toulouse III - Paul Sabatier","ror":"https://ror.org/02v6kpv12","country_code":"FR","type":"education","lineage":["https://openalex.org/I134560555","https://openalex.org/I4405258862"]},{"id":"https://openalex.org/I17866349","display_name":"Universit\u00e9 F\u00e9d\u00e9rale de Toulouse Midi-Pyr\u00e9n\u00e9es","ror":"https://ror.org/004raaa70","country_code":"FR","type":"education","lineage":["https://openalex.org/I17866349"]},{"id":"https://openalex.org/I99464096","display_name":"KU Leuven","ror":"https://ror.org/05f950310","country_code":"BE","type":"education","lineage":["https://openalex.org/I99464096"]},{"id":"https://openalex.org/I4210149702","display_name":"Laboratoire de Microbiologie et G\u00e9n\u00e9tique Mol\u00e9culaires","ror":"https://ror.org/04rrj3a80","country_code":"FR","type":"facility","lineage":["https://openalex.org/I1294671590","https://openalex.org/I1294671590","https://openalex.org/I134560555","https://openalex.org/I4210096427","https://openalex.org/I4210149702","https://openalex.org/I4405258862"]}],"countries":["BE","FR"],"is_corresponding":false,"raw_author_name":"Yves Moreau","raw_affiliation_strings":["1 ESAT-SCD. Katholieke Universiteit Leuven, Kasteelpark Arenberg 10, B-3001 Leuven, Belgium and 2Universit\u00e9 de Toulouse, UPS, Laboratoire de Microbiologie et G\u00e9n\u00e9tique Mol\u00e9culaire, Centre National de la Recherche Scientifique, F-31000 Toulouse, France"],"affiliations":[{"raw_affiliation_string":"1 ESAT-SCD. Katholieke Universiteit Leuven, Kasteelpark Arenberg 10, B-3001 Leuven, Belgium and 2Universit\u00e9 de Toulouse, UPS, Laboratoire de Microbiologie et G\u00e9n\u00e9tique Mol\u00e9culaire, Centre National de la Recherche Scientifique, F-31000 Toulouse, France","institution_ids":["https://openalex.org/I4210149702","https://openalex.org/I99464096","https://openalex.org/I17866349","https://openalex.org/I134560555"]}]}],"institutions":[],"countries_distinct_count":2,"institutions_distinct_count":3,"corresponding_author_ids":["https://openalex.org/A5104110262"],"corresponding_institution_ids":["https://openalex.org/I134560555","https://openalex.org/I17866349","https://openalex.org/I4210149702","https://openalex.org/I99464096"],"apc_list":{"value":3618,"currency":"USD","value_usd":3618},"apc_paid":null,"fwci":0.9252,"has_fulltext":false,"cited_by_count":14,"citation_normalized_percentile":{"value":0.73756658,"is_in_top_1_percent":false,"is_in_top_10_percent":false},"cited_by_percentile_year":{"min":89,"max":99},"biblio":{"volume":"26","issue":"17","first_page":"2210","last_page":"2211"},"is_retracted":false,"is_paratext":false,"is_xpac":false,"primary_topic":{"id":"https://openalex.org/T10878","display_name":"CRISPR and Genetic Engineering","score":0.9933000206947327,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},"topics":[{"id":"https://openalex.org/T10878","display_name":"CRISPR and Genetic Engineering","score":0.9933000206947327,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},{"id":"https://openalex.org/T10887","display_name":"Bioinformatics and Genomic Networks","score":0.9918000102043152,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},{"id":"https://openalex.org/T10015","display_name":"Genomics and Phylogenetic Studies","score":0.9915000200271606,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}}],"keywords":[{"id":"https://openalex.org/keywords/disk-formatting","display_name":"Disk formatting","score":0.8578797578811646},{"id":"https://openalex.org/keywords/computer-science","display_name":"Computer science","score":0.7973947525024414},{"id":"https://openalex.org/keywords/documentation","display_name":"Documentation","score":0.6872670650482178},{"id":"https://openalex.org/keywords/flexibility","display_name":"Flexibility (engineering)","score":0.6858806014060974},{"id":"https://openalex.org/keywords/world-wide-web","display_name":"World Wide Web","score":0.6222336292266846},{"id":"https://openalex.org/keywords/resource","display_name":"Resource (disambiguation)","score":0.4880942106246948},{"id":"https://openalex.org/keywords/database","display_name":"Database","score":0.45636624097824097},{"id":"https://openalex.org/keywords/information-retrieval","display_name":"Information retrieval","score":0.3891919255256653},{"id":"https://openalex.org/keywords/data-science","display_name":"Data science","score":0.3737807273864746}],"concepts":[{"id":"https://openalex.org/C88006597","wikidata":"https://www.wikidata.org/wiki/Q690117","display_name":"Disk formatting","level":2,"score":0.8578797578811646},{"id":"https://openalex.org/C41008148","wikidata":"https://www.wikidata.org/wiki/Q21198","display_name":"Computer science","level":0,"score":0.7973947525024414},{"id":"https://openalex.org/C56666940","wikidata":"https://www.wikidata.org/wiki/Q788790","display_name":"Documentation","level":2,"score":0.6872670650482178},{"id":"https://openalex.org/C2780598303","wikidata":"https://www.wikidata.org/wiki/Q65921492","display_name":"Flexibility (engineering)","level":2,"score":0.6858806014060974},{"id":"https://openalex.org/C136764020","wikidata":"https://www.wikidata.org/wiki/Q466","display_name":"World Wide Web","level":1,"score":0.6222336292266846},{"id":"https://openalex.org/C206345919","wikidata":"https://www.wikidata.org/wiki/Q20380951","display_name":"Resource (disambiguation)","level":2,"score":0.4880942106246948},{"id":"https://openalex.org/C77088390","wikidata":"https://www.wikidata.org/wiki/Q8513","display_name":"Database","level":1,"score":0.45636624097824097},{"id":"https://openalex.org/C23123220","wikidata":"https://www.wikidata.org/wiki/Q816826","display_name":"Information retrieval","level":1,"score":0.3891919255256653},{"id":"https://openalex.org/C2522767166","wikidata":"https://www.wikidata.org/wiki/Q2374463","display_name":"Data science","level":1,"score":0.3737807273864746},{"id":"https://openalex.org/C31258907","wikidata":"https://www.wikidata.org/wiki/Q1301371","display_name":"Computer network","level":1,"score":0.0},{"id":"https://openalex.org/C199360897","wikidata":"https://www.wikidata.org/wiki/Q9143","display_name":"Programming language","level":1,"score":0.0},{"id":"https://openalex.org/C111919701","wikidata":"https://www.wikidata.org/wiki/Q9135","display_name":"Operating system","level":1,"score":0.0},{"id":"https://openalex.org/C33923547","wikidata":"https://www.wikidata.org/wiki/Q395","display_name":"Mathematics","level":0,"score":0.0},{"id":"https://openalex.org/C105795698","wikidata":"https://www.wikidata.org/wiki/Q12483","display_name":"Statistics","level":1,"score":0.0}],"mesh":[{"descriptor_ui":"D012984","descriptor_name":"Software","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D012984","descriptor_name":"Software","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D012984","descriptor_name":"Software","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D016208","descriptor_name":"Databases, Factual","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D016208","descriptor_name":"Databases, Factual","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D016208","descriptor_name":"Databases, Factual","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D019295","descriptor_name":"Computational Biology","qualifier_ui":"Q000379","qualifier_name":"methods","is_major_topic":false},{"descriptor_ui":"D019295","descriptor_name":"Computational Biology","qualifier_ui":"Q000379","qualifier_name":"methods","is_major_topic":false},{"descriptor_ui":"D019295","descriptor_name":"Computational Biology","qualifier_ui":"Q000379","qualifier_name":"methods","is_major_topic":false},{"descriptor_ui":"D020407","descriptor_name":"Internet","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D020407","descriptor_name":"Internet","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D020407","descriptor_name":"Internet","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D051188","descriptor_name":"Knowledge Bases","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D051188","descriptor_name":"Knowledge Bases","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D051188","descriptor_name":"Knowledge Bases","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true}],"locations_count":2,"locations":[{"id":"doi:10.1093/bioinformatics/btq348","is_oa":true,"landing_page_url":"https://doi.org/10.1093/bioinformatics/btq348","pdf_url":"https://academic.oup.com/bioinformatics/article-pdf/26/17/2210/16894453/btq348.pdf","source":{"id":"https://openalex.org/S52395412","display_name":"Bioinformatics","issn_l":"1367-4803","issn":["1367-4803","1367-4811"],"is_oa":false,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310311648","host_organization_name":"Oxford University Press","host_organization_lineage":["https://openalex.org/P4310311648","https://openalex.org/P4310311647"],"host_organization_lineage_names":["Oxford University Press","University of Oxford"],"type":"journal"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Bioinformatics","raw_type":"journal-article"},{"id":"pmid:20591906","is_oa":false,"landing_page_url":"https://pubmed.ncbi.nlm.nih.gov/20591906","pdf_url":null,"source":{"id":"https://openalex.org/S4306525036","display_name":"PubMed","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I1299303238","host_organization_name":"National Institutes of Health","host_organization_lineage":["https://openalex.org/I1299303238"],"host_organization_lineage_names":[],"type":"repository"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Bioinformatics (Oxford, England)","raw_type":null}],"best_oa_location":{"id":"doi:10.1093/bioinformatics/btq348","is_oa":true,"landing_page_url":"https://doi.org/10.1093/bioinformatics/btq348","pdf_url":"https://academic.oup.com/bioinformatics/article-pdf/26/17/2210/16894453/btq348.pdf","source":{"id":"https://openalex.org/S52395412","display_name":"Bioinformatics","issn_l":"1367-4803","issn":["1367-4803","1367-4811"],"is_oa":false,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310311648","host_organization_name":"Oxford University Press","host_organization_lineage":["https://openalex.org/P4310311648","https://openalex.org/P4310311647"],"host_organization_lineage_names":["Oxford University Press","University of Oxford"],"type":"journal"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Bioinformatics","raw_type":"journal-article"},"sustainable_development_goals":[],"awards":[],"funders":[],"has_content":{"pdf":true,"grobid_xml":true},"content_urls":{"pdf":"https://content.openalex.org/works/W2105345473.pdf","grobid_xml":"https://content.openalex.org/works/W2105345473.grobid-xml"},"referenced_works_count":8,"referenced_works":["https://openalex.org/W2006803093","https://openalex.org/W2010502047","https://openalex.org/W2059002599","https://openalex.org/W2108781775","https://openalex.org/W2125314454","https://openalex.org/W2126820644","https://openalex.org/W2132586689","https://openalex.org/W2137512368"],"related_works":["https://openalex.org/W4244466418","https://openalex.org/W2104062382","https://openalex.org/W2162878363","https://openalex.org/W2389021890","https://openalex.org/W3023343521","https://openalex.org/W2146588098","https://openalex.org/W2479325685","https://openalex.org/W3183791698","https://openalex.org/W2480873127","https://openalex.org/W3111710556"],"abstract_inverted_index":{"The":[0],"source":[1],"code":[2],"and":[3],"its":[4],"documentation":[5],"are":[6],"freely":[7],"available":[8],"on":[9],"the":[10],"MediaWiki":[11],"website:":[12],"http://www.mediawiki.org/wiki/Extension:WikiOpener.":[13]},"counts_by_year":[{"year":2026,"cited_by_count":1},{"year":2024,"cited_by_count":1},{"year":2022,"cited_by_count":1},{"year":2020,"cited_by_count":1},{"year":2018,"cited_by_count":1},{"year":2015,"cited_by_count":2},{"year":2013,"cited_by_count":1},{"year":2012,"cited_by_count":3}],"updated_date":"2025-11-06T03:46:38.306776","created_date":"2025-10-10T00:00:00"}
