{"id":"https://openalex.org/W2152186486","doi":"https://doi.org/10.1093/bioinformatics/btq341","title":"Prophossi: automating expert validation of phosphopeptide\u2013spectrum matches from tandem mass spectrometry","display_name":"Prophossi: automating expert validation of phosphopeptide\u2013spectrum matches from tandem mass spectrometry","publication_year":2010,"publication_date":"2010-07-22","ids":{"openalex":"https://openalex.org/W2152186486","doi":"https://doi.org/10.1093/bioinformatics/btq341","mag":"2152186486","pmid":"https://pubmed.ncbi.nlm.nih.gov/20651112"},"language":"en","primary_location":{"id":"doi:10.1093/bioinformatics/btq341","is_oa":true,"landing_page_url":"https://doi.org/10.1093/bioinformatics/btq341","pdf_url":"https://academic.oup.com/bioinformatics/article-pdf/26/17/2153/48854210/bioinformatics_26_17_2153.pdf","source":{"id":"https://openalex.org/S52395412","display_name":"Bioinformatics","issn_l":"1367-4803","issn":["1367-4803","1367-4811"],"is_oa":false,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310311648","host_organization_name":"Oxford University Press","host_organization_lineage":["https://openalex.org/P4310311648","https://openalex.org/P4310311647"],"host_organization_lineage_names":["Oxford University Press","University of Oxford"],"type":"journal"},"license":"cc-by-nc","license_id":"https://openalex.org/licenses/cc-by-nc","version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Bioinformatics","raw_type":"journal-article"},"type":"article","indexed_in":["crossref","doaj","pubmed"],"open_access":{"is_oa":true,"oa_status":"hybrid","oa_url":"https://academic.oup.com/bioinformatics/article-pdf/26/17/2153/48854210/bioinformatics_26_17_2153.pdf","any_repository_has_fulltext":true},"authorships":[{"author_position":"first","author":{"id":"https://openalex.org/A5074551911","display_name":"David Martin","orcid":"https://orcid.org/0000-0002-8732-204X"},"institutions":[{"id":"https://openalex.org/I177639307","display_name":"University of Dundee","ror":"https://ror.org/03h2bxq36","country_code":"GB","type":"education","lineage":["https://openalex.org/I177639307"]},{"id":"https://openalex.org/I4210110201","display_name":"MRC Protein Phosphorylation and Ubiquitylation Unit","ror":"https://ror.org/01zg1tt02","country_code":"GB","type":"facility","lineage":["https://openalex.org/I177639307","https://openalex.org/I4210087105","https://openalex.org/I4210110201","https://openalex.org/I90344618"]}],"countries":["GB"],"is_corresponding":true,"raw_author_name":"David M.A. Martin","raw_affiliation_strings":["1 Division of Biological Chemistry and Drug Discovery and 2MRC Protein Phosphorylation Unit, College of Life Sciences, University of Dundee, Dow Street, Dundee DD1 5EH, UK"],"affiliations":[{"raw_affiliation_string":"1 Division of Biological Chemistry and Drug Discovery and 2MRC Protein Phosphorylation Unit, College of Life Sciences, University of Dundee, Dow Street, Dundee DD1 5EH, UK","institution_ids":["https://openalex.org/I4210110201","https://openalex.org/I177639307"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5068909234","display_name":"Isabelle Nett","orcid":null},"institutions":[{"id":"https://openalex.org/I4210110201","display_name":"MRC Protein Phosphorylation and Ubiquitylation Unit","ror":"https://ror.org/01zg1tt02","country_code":"GB","type":"facility","lineage":["https://openalex.org/I177639307","https://openalex.org/I4210087105","https://openalex.org/I4210110201","https://openalex.org/I90344618"]},{"id":"https://openalex.org/I177639307","display_name":"University of Dundee","ror":"https://ror.org/03h2bxq36","country_code":"GB","type":"education","lineage":["https://openalex.org/I177639307"]}],"countries":["GB"],"is_corresponding":false,"raw_author_name":"Isabelle R.E. Nett","raw_affiliation_strings":["1 Division of Biological Chemistry and Drug Discovery and 2MRC Protein Phosphorylation Unit, College of Life Sciences, University of Dundee, Dow Street, Dundee DD1 5EH, UK"],"affiliations":[{"raw_affiliation_string":"1 Division of Biological Chemistry and Drug Discovery and 2MRC Protein Phosphorylation Unit, College of Life Sciences, University of Dundee, Dow Street, Dundee DD1 5EH, UK","institution_ids":["https://openalex.org/I4210110201","https://openalex.org/I177639307"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5090500699","display_name":"Franck Vandermoere","orcid":"https://orcid.org/0000-0001-5724-7037"},"institutions":[{"id":"https://openalex.org/I4210110201","display_name":"MRC Protein Phosphorylation and Ubiquitylation Unit","ror":"https://ror.org/01zg1tt02","country_code":"GB","type":"facility","lineage":["https://openalex.org/I177639307","https://openalex.org/I4210087105","https://openalex.org/I4210110201","https://openalex.org/I90344618"]},{"id":"https://openalex.org/I177639307","display_name":"University of Dundee","ror":"https://ror.org/03h2bxq36","country_code":"GB","type":"education","lineage":["https://openalex.org/I177639307"]}],"countries":["GB"],"is_corresponding":false,"raw_author_name":"Franck Vandermoere","raw_affiliation_strings":["1 Division of Biological Chemistry and Drug Discovery and 2MRC Protein Phosphorylation Unit, College of Life Sciences, University of Dundee, Dow Street, Dundee DD1 5EH, UK"],"affiliations":[{"raw_affiliation_string":"1 Division of Biological Chemistry and Drug Discovery and 2MRC Protein Phosphorylation Unit, College of Life Sciences, University of Dundee, Dow Street, Dundee DD1 5EH, UK","institution_ids":["https://openalex.org/I4210110201","https://openalex.org/I177639307"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5075807327","display_name":"Jonathan D. Barber","orcid":null},"institutions":[{"id":"https://openalex.org/I4210110201","display_name":"MRC Protein Phosphorylation and Ubiquitylation Unit","ror":"https://ror.org/01zg1tt02","country_code":"GB","type":"facility","lineage":["https://openalex.org/I177639307","https://openalex.org/I4210087105","https://openalex.org/I4210110201","https://openalex.org/I90344618"]},{"id":"https://openalex.org/I177639307","display_name":"University of Dundee","ror":"https://ror.org/03h2bxq36","country_code":"GB","type":"education","lineage":["https://openalex.org/I177639307"]}],"countries":["GB"],"is_corresponding":false,"raw_author_name":"Jonathan D. Barber","raw_affiliation_strings":["1 Division of Biological Chemistry and Drug Discovery and 2MRC Protein Phosphorylation Unit, College of Life Sciences, University of Dundee, Dow Street, Dundee DD1 5EH, UK"],"affiliations":[{"raw_affiliation_string":"1 Division of Biological Chemistry and Drug Discovery and 2MRC Protein Phosphorylation Unit, College of Life Sciences, University of Dundee, Dow Street, Dundee DD1 5EH, UK","institution_ids":["https://openalex.org/I4210110201","https://openalex.org/I177639307"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5112472651","display_name":"Nicholas A. Morrice","orcid":null},"institutions":[{"id":"https://openalex.org/I4210110201","display_name":"MRC Protein Phosphorylation and Ubiquitylation Unit","ror":"https://ror.org/01zg1tt02","country_code":"GB","type":"facility","lineage":["https://openalex.org/I177639307","https://openalex.org/I4210087105","https://openalex.org/I4210110201","https://openalex.org/I90344618"]},{"id":"https://openalex.org/I177639307","display_name":"University of Dundee","ror":"https://ror.org/03h2bxq36","country_code":"GB","type":"education","lineage":["https://openalex.org/I177639307"]}],"countries":["GB"],"is_corresponding":false,"raw_author_name":"Nicholas A. Morrice","raw_affiliation_strings":["1 Division of Biological Chemistry and Drug Discovery and 2MRC Protein Phosphorylation Unit, College of Life Sciences, University of Dundee, Dow Street, Dundee DD1 5EH, UK"],"affiliations":[{"raw_affiliation_string":"1 Division of Biological Chemistry and Drug Discovery and 2MRC Protein Phosphorylation Unit, College of Life Sciences, University of Dundee, Dow Street, Dundee DD1 5EH, UK","institution_ids":["https://openalex.org/I4210110201","https://openalex.org/I177639307"]}]},{"author_position":"last","author":{"id":"https://openalex.org/A5013454330","display_name":"Michael A. J. Ferguson","orcid":"https://orcid.org/0000-0003-1321-8714"},"institutions":[{"id":"https://openalex.org/I4210110201","display_name":"MRC Protein Phosphorylation and Ubiquitylation Unit","ror":"https://ror.org/01zg1tt02","country_code":"GB","type":"facility","lineage":["https://openalex.org/I177639307","https://openalex.org/I4210087105","https://openalex.org/I4210110201","https://openalex.org/I90344618"]},{"id":"https://openalex.org/I177639307","display_name":"University of Dundee","ror":"https://ror.org/03h2bxq36","country_code":"GB","type":"education","lineage":["https://openalex.org/I177639307"]}],"countries":["GB"],"is_corresponding":false,"raw_author_name":"Michael A.J. Ferguson","raw_affiliation_strings":["1 Division of Biological Chemistry and Drug Discovery and 2MRC Protein Phosphorylation Unit, College of Life Sciences, University of Dundee, Dow Street, Dundee DD1 5EH, UK"],"affiliations":[{"raw_affiliation_string":"1 Division of Biological Chemistry and Drug Discovery and 2MRC Protein Phosphorylation Unit, College of Life Sciences, University of Dundee, Dow Street, Dundee DD1 5EH, UK","institution_ids":["https://openalex.org/I4210110201","https://openalex.org/I177639307"]}]}],"institutions":[],"countries_distinct_count":1,"institutions_distinct_count":6,"corresponding_author_ids":["https://openalex.org/A5074551911"],"corresponding_institution_ids":["https://openalex.org/I177639307","https://openalex.org/I4210110201"],"apc_list":{"value":3618,"currency":"USD","value_usd":3618},"apc_paid":{"value":3618,"currency":"USD","value_usd":3618},"fwci":1.1447,"has_fulltext":false,"cited_by_count":19,"citation_normalized_percentile":{"value":0.76669961,"is_in_top_1_percent":false,"is_in_top_10_percent":false},"cited_by_percentile_year":{"min":89,"max":98},"biblio":{"volume":"26","issue":"17","first_page":"2153","last_page":"2159"},"is_retracted":false,"is_paratext":false,"is_xpac":false,"primary_topic":{"id":"https://openalex.org/T10519","display_name":"Advanced Proteomics Techniques and Applications","score":0.9995999932289124,"subfield":{"id":"https://openalex.org/subfields/1607","display_name":"Spectroscopy"},"field":{"id":"https://openalex.org/fields/16","display_name":"Chemistry"},"domain":{"id":"https://openalex.org/domains/3","display_name":"Physical Sciences"}},"topics":[{"id":"https://openalex.org/T10519","display_name":"Advanced Proteomics Techniques and Applications","score":0.9995999932289124,"subfield":{"id":"https://openalex.org/subfields/1607","display_name":"Spectroscopy"},"field":{"id":"https://openalex.org/fields/16","display_name":"Chemistry"},"domain":{"id":"https://openalex.org/domains/3","display_name":"Physical Sciences"}},{"id":"https://openalex.org/T10683","display_name":"Mass Spectrometry Techniques and Applications","score":0.9993000030517578,"subfield":{"id":"https://openalex.org/subfields/1607","display_name":"Spectroscopy"},"field":{"id":"https://openalex.org/fields/16","display_name":"Chemistry"},"domain":{"id":"https://openalex.org/domains/3","display_name":"Physical Sciences"}},{"id":"https://openalex.org/T10044","display_name":"Protein Structure and Dynamics","score":0.9883000254631042,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}}],"keywords":[{"id":"https://openalex.org/keywords/mascot","display_name":"Mascot","score":0.7102160453796387},{"id":"https://openalex.org/keywords/replicate","display_name":"Replicate","score":0.7006222009658813},{"id":"https://openalex.org/keywords/tandem-mass-spectrometry","display_name":"Tandem mass spectrometry","score":0.6421568393707275},{"id":"https://openalex.org/keywords/proteome","display_name":"Proteome","score":0.6361917853355408},{"id":"https://openalex.org/keywords/mass-spectrometry","display_name":"Mass spectrometry","score":0.5933718085289001},{"id":"https://openalex.org/keywords/computational-biology","display_name":"Computational biology","score":0.5842929482460022},{"id":"https://openalex.org/keywords/computer-science","display_name":"Computer science","score":0.5413352251052856},{"id":"https://openalex.org/keywords/false-discovery-rate","display_name":"False discovery rate","score":0.510994553565979},{"id":"https://openalex.org/keywords/phosphorylation","display_name":"Phosphorylation","score":0.5046323537826538},{"id":"https://openalex.org/keywords/phosphopeptide","display_name":"Phosphopeptide","score":0.4923449754714966},{"id":"https://openalex.org/keywords/database-search-engine","display_name":"Database search engine","score":0.4246904253959656},{"id":"https://openalex.org/keywords/proteomics","display_name":"Proteomics","score":0.413421630859375},{"id":"https://openalex.org/keywords/chemistry","display_name":"Chemistry","score":0.37924593687057495},{"id":"https://openalex.org/keywords/chromatography","display_name":"Chromatography","score":0.26628220081329346},{"id":"https://openalex.org/keywords/biology","display_name":"Biology","score":0.22677311301231384},{"id":"https://openalex.org/keywords/search-engine","display_name":"Search engine","score":0.20994144678115845},{"id":"https://openalex.org/keywords/information-retrieval","display_name":"Information retrieval","score":0.19323107600212097},{"id":"https://openalex.org/keywords/biochemistry","display_name":"Biochemistry","score":0.15133225917816162},{"id":"https://openalex.org/keywords/mathematics","display_name":"Mathematics","score":0.09807586669921875},{"id":"https://openalex.org/keywords/statistics","display_name":"Statistics","score":0.08595052361488342}],"concepts":[{"id":"https://openalex.org/C2778160393","wikidata":"https://www.wikidata.org/wiki/Q18670161","display_name":"Mascot","level":2,"score":0.7102160453796387},{"id":"https://openalex.org/C2781162219","wikidata":"https://www.wikidata.org/wiki/Q26250693","display_name":"Replicate","level":2,"score":0.7006222009658813},{"id":"https://openalex.org/C31827203","wikidata":"https://www.wikidata.org/wiki/Q874296","display_name":"Tandem mass spectrometry","level":3,"score":0.6421568393707275},{"id":"https://openalex.org/C104397665","wikidata":"https://www.wikidata.org/wiki/Q860947","display_name":"Proteome","level":2,"score":0.6361917853355408},{"id":"https://openalex.org/C162356407","wikidata":"https://www.wikidata.org/wiki/Q180809","display_name":"Mass spectrometry","level":2,"score":0.5933718085289001},{"id":"https://openalex.org/C70721500","wikidata":"https://www.wikidata.org/wiki/Q177005","display_name":"Computational biology","level":1,"score":0.5842929482460022},{"id":"https://openalex.org/C41008148","wikidata":"https://www.wikidata.org/wiki/Q21198","display_name":"Computer science","level":0,"score":0.5413352251052856},{"id":"https://openalex.org/C193244246","wikidata":"https://www.wikidata.org/wiki/Q5432696","display_name":"False discovery rate","level":3,"score":0.510994553565979},{"id":"https://openalex.org/C11960822","wikidata":"https://www.wikidata.org/wiki/Q242736","display_name":"Phosphorylation","level":2,"score":0.5046323537826538},{"id":"https://openalex.org/C2779933727","wikidata":"https://www.wikidata.org/wiki/Q7187535","display_name":"Phosphopeptide","level":3,"score":0.4923449754714966},{"id":"https://openalex.org/C48000682","wikidata":"https://www.wikidata.org/wiki/Q5227411","display_name":"Database search engine","level":3,"score":0.4246904253959656},{"id":"https://openalex.org/C46111723","wikidata":"https://www.wikidata.org/wiki/Q471857","display_name":"Proteomics","level":3,"score":0.413421630859375},{"id":"https://openalex.org/C185592680","wikidata":"https://www.wikidata.org/wiki/Q2329","display_name":"Chemistry","level":0,"score":0.37924593687057495},{"id":"https://openalex.org/C43617362","wikidata":"https://www.wikidata.org/wiki/Q170050","display_name":"Chromatography","level":1,"score":0.26628220081329346},{"id":"https://openalex.org/C86803240","wikidata":"https://www.wikidata.org/wiki/Q420","display_name":"Biology","level":0,"score":0.22677311301231384},{"id":"https://openalex.org/C97854310","wikidata":"https://www.wikidata.org/wiki/Q19541","display_name":"Search engine","level":2,"score":0.20994144678115845},{"id":"https://openalex.org/C23123220","wikidata":"https://www.wikidata.org/wiki/Q816826","display_name":"Information retrieval","level":1,"score":0.19323107600212097},{"id":"https://openalex.org/C55493867","wikidata":"https://www.wikidata.org/wiki/Q7094","display_name":"Biochemistry","level":1,"score":0.15133225917816162},{"id":"https://openalex.org/C33923547","wikidata":"https://www.wikidata.org/wiki/Q395","display_name":"Mathematics","level":0,"score":0.09807586669921875},{"id":"https://openalex.org/C105795698","wikidata":"https://www.wikidata.org/wiki/Q12483","display_name":"Statistics","level":1,"score":0.08595052361488342},{"id":"https://openalex.org/C104317684","wikidata":"https://www.wikidata.org/wiki/Q7187","display_name":"Gene","level":2,"score":0.0},{"id":"https://openalex.org/C17744445","wikidata":"https://www.wikidata.org/wiki/Q36442","display_name":"Political science","level":0,"score":0.0},{"id":"https://openalex.org/C199539241","wikidata":"https://www.wikidata.org/wiki/Q7748","display_name":"Law","level":1,"score":0.0}],"mesh":[{"descriptor_ui":"D000465","descriptor_name":"Algorithms","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D000465","descriptor_name":"Algorithms","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D000465","descriptor_name":"Algorithms","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D001331","descriptor_name":"Automation","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D001331","descriptor_name":"Automation","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D001331","descriptor_name":"Automation","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D010748","descriptor_name":"Phosphopeptides","qualifier_ui":"Q000032","qualifier_name":"analysis","is_major_topic":false},{"descriptor_ui":"D010748","descriptor_name":"Phosphopeptides","qualifier_ui":"Q000032","qualifier_name":"analysis","is_major_topic":false},{"descriptor_ui":"D010748","descriptor_name":"Phosphopeptides","qualifier_ui":"Q000032","qualifier_name":"analysis","is_major_topic":false},{"descriptor_ui":"D010766","descriptor_name":"Phosphorylation","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D010766","descriptor_name":"Phosphorylation","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D010766","descriptor_name":"Phosphorylation","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D011499","descriptor_name":"Protein Processing, Post-Translational","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D011499","descriptor_name":"Protein Processing, Post-Translational","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D011499","descriptor_name":"Protein Processing, Post-Translational","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D012984","descriptor_name":"Software","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D012984","descriptor_name":"Software","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D012984","descriptor_name":"Software","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D014346","descriptor_name":"Trypanosoma brucei brucei","qualifier_ui":"Q000378","qualifier_name":"metabolism","is_major_topic":false},{"descriptor_ui":"D014346","descriptor_name":"Trypanosoma brucei brucei","qualifier_ui":"Q000378","qualifier_name":"metabolism","is_major_topic":false},{"descriptor_ui":"D014346","descriptor_name":"Trypanosoma brucei brucei","qualifier_ui":"Q000378","qualifier_name":"metabolism","is_major_topic":false},{"descriptor_ui":"D016208","descriptor_name":"Databases, Factual","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D016208","descriptor_name":"Databases, Factual","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D016208","descriptor_name":"Databases, Factual","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D053719","descriptor_name":"Tandem Mass Spectrometry","qualifier_ui":"Q000379","qualifier_name":"methods","is_major_topic":false},{"descriptor_ui":"D053719","descriptor_name":"Tandem Mass Spectrometry","qualifier_ui":"Q000379","qualifier_name":"methods","is_major_topic":false},{"descriptor_ui":"D053719","descriptor_name":"Tandem Mass Spectrometry","qualifier_ui":"Q000379","qualifier_name":"methods","is_major_topic":false}],"locations_count":5,"locations":[{"id":"doi:10.1093/bioinformatics/btq341","is_oa":true,"landing_page_url":"https://doi.org/10.1093/bioinformatics/btq341","pdf_url":"https://academic.oup.com/bioinformatics/article-pdf/26/17/2153/48854210/bioinformatics_26_17_2153.pdf","source":{"id":"https://openalex.org/S52395412","display_name":"Bioinformatics","issn_l":"1367-4803","issn":["1367-4803","1367-4811"],"is_oa":false,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310311648","host_organization_name":"Oxford University Press","host_organization_lineage":["https://openalex.org/P4310311648","https://openalex.org/P4310311647"],"host_organization_lineage_names":["Oxford University Press","University of Oxford"],"type":"journal"},"license":"cc-by-nc","license_id":"https://openalex.org/licenses/cc-by-nc","version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Bioinformatics","raw_type":"journal-article"},{"id":"pmid:20651112","is_oa":false,"landing_page_url":"https://pubmed.ncbi.nlm.nih.gov/20651112","pdf_url":null,"source":{"id":"https://openalex.org/S4306525036","display_name":"PubMed","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I1299303238","host_organization_name":"National Institutes of Health","host_organization_lineage":["https://openalex.org/I1299303238"],"host_organization_lineage_names":[],"type":"repository"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Bioinformatics (Oxford, England)","raw_type":null},{"id":"pmh:oai:discovery.dundee.ac.uk:openaire_cris_publications/a3ff6898-c0e5-414b-8d76-23e3f6f925b7","is_oa":false,"landing_page_url":"https://discovery.dundee.ac.uk/en/publications/a3ff6898-c0e5-414b-8d76-23e3f6f925b7","pdf_url":null,"source":{"id":"https://openalex.org/S4306400523","display_name":"Discovery Research Portal (University of Dundee)","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I177639307","host_organization_name":"University of Dundee","host_organization_lineage":["https://openalex.org/I177639307"],"host_organization_lineage_names":[],"type":"repository"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Martin, D M A, Nett, I R E, Vandermoere, F, Barber, J D, Morrice, N A & Ferguson, M A J 2010, 'Prophossi : automating expert validation of phosphopeptide-spectrum matches from tandem mass spectrometry', Bioinformatics, vol. 26, no. 17, pp. 2153-2159. https://doi.org/10.1093/bioinformatics/btq341","raw_type":"info:eu-repo/semantics/publishedVersion"},{"id":"pmh:oai:HAL:hal-03030170v1","is_oa":true,"landing_page_url":"https://hal.science/hal-03030170","pdf_url":null,"source":{"id":"https://openalex.org/S4306402512","display_name":"HAL (Le Centre pour la Communication Scientifique Directe)","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I1294671590","host_organization_name":"Centre National de la Recherche Scientifique","host_organization_lineage":["https://openalex.org/I1294671590"],"host_organization_lineage_names":[],"type":"repository"},"license":"other-oa","license_id":"https://openalex.org/licenses/other-oa","version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":"Bioinformatics, 2010, 26 (17), pp.2153 - 2159. &#x27E8;10.1093/bioinformatics/btq341&#x27E9;","raw_type":"Journal articles"},{"id":"pmh:oai:europepmc.org:2000087","is_oa":false,"landing_page_url":"https://www.ncbi.nlm.nih.gov/pmc/articles/2922888","pdf_url":null,"source":{"id":"https://openalex.org/S4306400806","display_name":"Europe PMC (PubMed Central)","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I1303153112","host_organization_name":"European Bioinformatics Institute","host_organization_lineage":["https://openalex.org/I1303153112"],"host_organization_lineage_names":[],"type":"repository"},"license":null,"license_id":null,"version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":null,"raw_type":"Text"}],"best_oa_location":{"id":"doi:10.1093/bioinformatics/btq341","is_oa":true,"landing_page_url":"https://doi.org/10.1093/bioinformatics/btq341","pdf_url":"https://academic.oup.com/bioinformatics/article-pdf/26/17/2153/48854210/bioinformatics_26_17_2153.pdf","source":{"id":"https://openalex.org/S52395412","display_name":"Bioinformatics","issn_l":"1367-4803","issn":["1367-4803","1367-4811"],"is_oa":false,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310311648","host_organization_name":"Oxford University Press","host_organization_lineage":["https://openalex.org/P4310311648","https://openalex.org/P4310311647"],"host_organization_lineage_names":["Oxford University Press","University of Oxford"],"type":"journal"},"license":"cc-by-nc","license_id":"https://openalex.org/licenses/cc-by-nc","version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Bioinformatics","raw_type":"journal-article"},"sustainable_development_goals":[{"display_name":"Partnerships for the goals","id":"https://metadata.un.org/sdg/17","score":0.46000000834465027}],"awards":[],"funders":[],"has_content":{"grobid_xml":true,"pdf":true},"content_urls":{"pdf":"https://content.openalex.org/works/W2152186486.pdf","grobid_xml":"https://content.openalex.org/works/W2152186486.grobid-xml"},"referenced_works_count":22,"referenced_works":["https://openalex.org/W1981593008","https://openalex.org/W1988667155","https://openalex.org/W1993450321","https://openalex.org/W1997835441","https://openalex.org/W2009412756","https://openalex.org/W2030157681","https://openalex.org/W2031810865","https://openalex.org/W2033889320","https://openalex.org/W2041162439","https://openalex.org/W2055934103","https://openalex.org/W2059572899","https://openalex.org/W2062656880","https://openalex.org/W2096057003","https://openalex.org/W2102693496","https://openalex.org/W2104726963","https://openalex.org/W2109553965","https://openalex.org/W2119190889","https://openalex.org/W2141376777","https://openalex.org/W2157106689","https://openalex.org/W2163085584","https://openalex.org/W2470266050","https://openalex.org/W3140224935"],"related_works":["https://openalex.org/W2076056792","https://openalex.org/W2138745251","https://openalex.org/W2004953990","https://openalex.org/W4238067418","https://openalex.org/W3093795667","https://openalex.org/W4241471035","https://openalex.org/W2091910167","https://openalex.org/W3177529432","https://openalex.org/W2282020652","https://openalex.org/W2029674856"],"abstract_inverted_index":{"A":[0],"GPL":[1],"licensed":[2],"software":[3],"implementation":[4],"in":[5,14],"Perl":[6],"for":[7],"analysis":[8],"and":[9,18],"spectrum":[10],"annotation":[11],"is":[12],"available":[13],"the":[15],"supplementary":[16],"material":[17],"a":[19],"web":[20],"server":[21],"can":[22],"be":[23],"assessed":[24],"online":[25],"at":[26],"http://www.compbio.dundee.ac.uk/prophossi.":[27]},"counts_by_year":[{"year":2025,"cited_by_count":2},{"year":2022,"cited_by_count":1},{"year":2019,"cited_by_count":1},{"year":2016,"cited_by_count":4},{"year":2015,"cited_by_count":2},{"year":2014,"cited_by_count":2},{"year":2013,"cited_by_count":3},{"year":2012,"cited_by_count":2}],"updated_date":"2026-03-20T23:20:44.827607","created_date":"2025-10-10T00:00:00"}
