{"id":"https://openalex.org/W2144658220","doi":"https://doi.org/10.1093/bioinformatics/btq322","title":"<i>MSMS</i>: a coalescent simulation program including recombination, demographic structure and selection at a single locus","display_name":"<i>MSMS</i>: a coalescent simulation program including recombination, demographic structure and selection at a single locus","publication_year":2010,"publication_date":"2010-06-30","ids":{"openalex":"https://openalex.org/W2144658220","doi":"https://doi.org/10.1093/bioinformatics/btq322","mag":"2144658220","pmid":"https://pubmed.ncbi.nlm.nih.gov/20591904"},"language":"en","primary_location":{"id":"doi:10.1093/bioinformatics/btq322","is_oa":true,"landing_page_url":"https://doi.org/10.1093/bioinformatics/btq322","pdf_url":"https://academic.oup.com/bioinformatics/article-pdf/26/16/2064/48856284/bioinformatics_26_16_2064.pdf","source":{"id":"https://openalex.org/S52395412","display_name":"Bioinformatics","issn_l":"1367-4803","issn":["1367-4803","1367-4811"],"is_oa":false,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310311648","host_organization_name":"Oxford University Press","host_organization_lineage":["https://openalex.org/P4310311648","https://openalex.org/P4310311647"],"host_organization_lineage_names":["Oxford University Press","University of Oxford"],"type":"journal"},"license":"cc-by-nc","license_id":"https://openalex.org/licenses/cc-by-nc","version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Bioinformatics","raw_type":"journal-article"},"type":"article","indexed_in":["crossref","doaj","pubmed"],"open_access":{"is_oa":true,"oa_status":"hybrid","oa_url":"https://academic.oup.com/bioinformatics/article-pdf/26/16/2064/48856284/bioinformatics_26_16_2064.pdf","any_repository_has_fulltext":true},"authorships":[{"author_position":"first","author":{"id":"https://openalex.org/A5002278787","display_name":"Gregory B. Ewing","orcid":null},"institutions":[{"id":"https://openalex.org/I129774422","display_name":"University of Vienna","ror":"https://ror.org/03prydq77","country_code":"AT","type":"education","lineage":["https://openalex.org/I129774422"]},{"id":"https://openalex.org/I2802916955","display_name":"Max Perutz Labs","ror":"https://ror.org/05cz70a34","country_code":"AT","type":"facility","lineage":["https://openalex.org/I2802916955"]}],"countries":["AT"],"is_corresponding":true,"raw_author_name":"Gregory Ewing","raw_affiliation_strings":["1 Department of Mathematics, University of Vienna, Nordbergstrasse 15, A-1090 Vienna, Austria and 2Max F. Perutz Laboratories, Dr. Bohrgasse 9, A-1030 Vienna, Austria"],"affiliations":[{"raw_affiliation_string":"1 Department of Mathematics, University of Vienna, Nordbergstrasse 15, A-1090 Vienna, Austria and 2Max F. Perutz Laboratories, Dr. Bohrgasse 9, A-1030 Vienna, Austria","institution_ids":["https://openalex.org/I2802916955","https://openalex.org/I129774422"]}]},{"author_position":"last","author":{"id":"https://openalex.org/A5032789220","display_name":"Joachim Hermisson","orcid":"https://orcid.org/0000-0001-7476-9283"},"institutions":[{"id":"https://openalex.org/I2802916955","display_name":"Max Perutz Labs","ror":"https://ror.org/05cz70a34","country_code":"AT","type":"facility","lineage":["https://openalex.org/I2802916955"]},{"id":"https://openalex.org/I129774422","display_name":"University of Vienna","ror":"https://ror.org/03prydq77","country_code":"AT","type":"education","lineage":["https://openalex.org/I129774422"]}],"countries":["AT"],"is_corresponding":false,"raw_author_name":"Joachim Hermisson","raw_affiliation_strings":["1 Department of Mathematics, University of Vienna, Nordbergstrasse 15, A-1090 Vienna, Austria and 2Max F. Perutz Laboratories, Dr. Bohrgasse 9, A-1030 Vienna, Austria"],"affiliations":[{"raw_affiliation_string":"1 Department of Mathematics, University of Vienna, Nordbergstrasse 15, A-1090 Vienna, Austria and 2Max F. Perutz Laboratories, Dr. Bohrgasse 9, A-1030 Vienna, Austria","institution_ids":["https://openalex.org/I2802916955","https://openalex.org/I129774422"]}]}],"institutions":[],"countries_distinct_count":1,"institutions_distinct_count":2,"corresponding_author_ids":["https://openalex.org/A5002278787"],"corresponding_institution_ids":["https://openalex.org/I129774422","https://openalex.org/I2802916955"],"apc_list":{"value":3618,"currency":"USD","value_usd":3618},"apc_paid":{"value":3618,"currency":"USD","value_usd":3618},"fwci":11.5746,"has_fulltext":false,"cited_by_count":408,"citation_normalized_percentile":{"value":0.98917697,"is_in_top_1_percent":false,"is_in_top_10_percent":true},"cited_by_percentile_year":{"min":98,"max":100},"biblio":{"volume":"26","issue":"16","first_page":"2064","last_page":"2065"},"is_retracted":false,"is_paratext":false,"is_xpac":false,"primary_topic":{"id":"https://openalex.org/T11764","display_name":"Evolution and Genetic Dynamics","score":0.9994000196456909,"subfield":{"id":"https://openalex.org/subfields/1311","display_name":"Genetics"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},"topics":[{"id":"https://openalex.org/T11764","display_name":"Evolution and Genetic Dynamics","score":0.9994000196456909,"subfield":{"id":"https://openalex.org/subfields/1311","display_name":"Genetics"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},{"id":"https://openalex.org/T11468","display_name":"Genetic Mapping and Diversity in Plants and Animals","score":0.9947999715805054,"subfield":{"id":"https://openalex.org/subfields/1311","display_name":"Genetics"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},{"id":"https://openalex.org/T10733","display_name":"Wheat and Barley Genetics and Pathology","score":0.9919000267982483,"subfield":{"id":"https://openalex.org/subfields/1110","display_name":"Plant Science"},"field":{"id":"https://openalex.org/fields/11","display_name":"Agricultural and Biological Sciences"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}}],"keywords":[{"id":"https://openalex.org/keywords/coalescent-theory","display_name":"Coalescent theory","score":0.834145188331604},{"id":"https://openalex.org/keywords/selection","display_name":"Selection (genetic algorithm)","score":0.692258358001709},{"id":"https://openalex.org/keywords/computer-science","display_name":"Computer science","score":0.6096698641777039},{"id":"https://openalex.org/keywords/population","display_name":"Population","score":0.5633200407028198},{"id":"https://openalex.org/keywords/locus","display_name":"Locus (genetics)","score":0.5281883478164673},{"id":"https://openalex.org/keywords/biology","display_name":"Biology","score":0.2835705578327179},{"id":"https://openalex.org/keywords/genetics","display_name":"Genetics","score":0.22343894839286804},{"id":"https://openalex.org/keywords/machine-learning","display_name":"Machine learning","score":0.19808855652809143},{"id":"https://openalex.org/keywords/gene","display_name":"Gene","score":0.07000082731246948}],"concepts":[{"id":"https://openalex.org/C2554327","wikidata":"https://www.wikidata.org/wiki/Q2698599","display_name":"Coalescent theory","level":4,"score":0.834145188331604},{"id":"https://openalex.org/C81917197","wikidata":"https://www.wikidata.org/wiki/Q628760","display_name":"Selection (genetic algorithm)","level":2,"score":0.692258358001709},{"id":"https://openalex.org/C41008148","wikidata":"https://www.wikidata.org/wiki/Q21198","display_name":"Computer science","level":0,"score":0.6096698641777039},{"id":"https://openalex.org/C2908647359","wikidata":"https://www.wikidata.org/wiki/Q2625603","display_name":"Population","level":2,"score":0.5633200407028198},{"id":"https://openalex.org/C84597430","wikidata":"https://www.wikidata.org/wiki/Q106227","display_name":"Locus (genetics)","level":3,"score":0.5281883478164673},{"id":"https://openalex.org/C86803240","wikidata":"https://www.wikidata.org/wiki/Q420","display_name":"Biology","level":0,"score":0.2835705578327179},{"id":"https://openalex.org/C54355233","wikidata":"https://www.wikidata.org/wiki/Q7162","display_name":"Genetics","level":1,"score":0.22343894839286804},{"id":"https://openalex.org/C119857082","wikidata":"https://www.wikidata.org/wiki/Q2539","display_name":"Machine learning","level":1,"score":0.19808855652809143},{"id":"https://openalex.org/C104317684","wikidata":"https://www.wikidata.org/wiki/Q7187","display_name":"Gene","level":2,"score":0.07000082731246948},{"id":"https://openalex.org/C149923435","wikidata":"https://www.wikidata.org/wiki/Q37732","display_name":"Demography","level":1,"score":0.0},{"id":"https://openalex.org/C144024400","wikidata":"https://www.wikidata.org/wiki/Q21201","display_name":"Sociology","level":0,"score":0.0},{"id":"https://openalex.org/C193252679","wikidata":"https://www.wikidata.org/wiki/Q242125","display_name":"Phylogenetic tree","level":3,"score":0.0}],"mesh":[{"descriptor_ui":"D003198","descriptor_name":"Computer Simulation","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D003198","descriptor_name":"Computer Simulation","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D003198","descriptor_name":"Computer Simulation","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D003710","descriptor_name":"Demography","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D003710","descriptor_name":"Demography","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D003710","descriptor_name":"Demography","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D006801","descriptor_name":"Humans","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D006801","descriptor_name":"Humans","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D006801","descriptor_name":"Humans","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D011153","descriptor_name":"Population","qualifier_ui":"Q000235","qualifier_name":"genetics","is_major_topic":false},{"descriptor_ui":"D011153","descriptor_name":"Population","qualifier_ui":"Q000235","qualifier_name":"genetics","is_major_topic":false},{"descriptor_ui":"D011153","descriptor_name":"Population","qualifier_ui":"Q000235","qualifier_name":"genetics","is_major_topic":false},{"descriptor_ui":"D011995","descriptor_name":"Recombination, Genetic","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D011995","descriptor_name":"Recombination, Genetic","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D011995","descriptor_name":"Recombination, Genetic","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D012641","descriptor_name":"Selection, Genetic","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D012641","descriptor_name":"Selection, Genetic","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D012641","descriptor_name":"Selection, Genetic","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D012984","descriptor_name":"Software","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D012984","descriptor_name":"Software","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D012984","descriptor_name":"Software","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D056426","descriptor_name":"Genetic Loci","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D056426","descriptor_name":"Genetic Loci","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D056426","descriptor_name":"Genetic Loci","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true}],"locations_count":4,"locations":[{"id":"doi:10.1093/bioinformatics/btq322","is_oa":true,"landing_page_url":"https://doi.org/10.1093/bioinformatics/btq322","pdf_url":"https://academic.oup.com/bioinformatics/article-pdf/26/16/2064/48856284/bioinformatics_26_16_2064.pdf","source":{"id":"https://openalex.org/S52395412","display_name":"Bioinformatics","issn_l":"1367-4803","issn":["1367-4803","1367-4811"],"is_oa":false,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310311648","host_organization_name":"Oxford University Press","host_organization_lineage":["https://openalex.org/P4310311648","https://openalex.org/P4310311647"],"host_organization_lineage_names":["Oxford University Press","University of Oxford"],"type":"journal"},"license":"cc-by-nc","license_id":"https://openalex.org/licenses/cc-by-nc","version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Bioinformatics","raw_type":"journal-article"},{"id":"pmid:20591904","is_oa":false,"landing_page_url":"https://pubmed.ncbi.nlm.nih.gov/20591904","pdf_url":null,"source":{"id":"https://openalex.org/S4306525036","display_name":"PubMed","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I1299303238","host_organization_name":"National Institutes of Health","host_organization_lineage":["https://openalex.org/I1299303238"],"host_organization_lineage_names":[],"type":"repository"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Bioinformatics (Oxford, England)","raw_type":null},{"id":"pmh:info:fedora/oai:univie.ac.at:o:244593","is_oa":true,"landing_page_url":"https://phaidra.univie.ac.at/o:244593","pdf_url":null,"source":{"id":"https://openalex.org/S4306401993","display_name":"Phaidra (Universit\u00e4t Wien)","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I129774422","host_organization_name":"University of Vienna","host_organization_lineage":["https://openalex.org/I129774422"],"host_organization_lineage_names":[],"type":"repository"},"license":"cc-by-nc-nd","license_id":"https://openalex.org/licenses/cc-by-nc-nd","version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":"ISSN:1367-4811","raw_type":"article"},{"id":"pmh:oai:pubmedcentral.nih.gov:2916717","is_oa":true,"landing_page_url":"https://www.ncbi.nlm.nih.gov/pmc/articles/2916717","pdf_url":null,"source":{"id":"https://openalex.org/S2764455111","display_name":"PubMed Central","issn_l":null,"issn":null,"is_oa":true,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I1299303238","host_organization_name":"National Institutes of Health","host_organization_lineage":["https://openalex.org/I1299303238"],"host_organization_lineage_names":[],"type":"repository"},"license":null,"license_id":null,"version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":"Bioinformatics","raw_type":"Text"}],"best_oa_location":{"id":"doi:10.1093/bioinformatics/btq322","is_oa":true,"landing_page_url":"https://doi.org/10.1093/bioinformatics/btq322","pdf_url":"https://academic.oup.com/bioinformatics/article-pdf/26/16/2064/48856284/bioinformatics_26_16_2064.pdf","source":{"id":"https://openalex.org/S52395412","display_name":"Bioinformatics","issn_l":"1367-4803","issn":["1367-4803","1367-4811"],"is_oa":false,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310311648","host_organization_name":"Oxford University Press","host_organization_lineage":["https://openalex.org/P4310311648","https://openalex.org/P4310311647"],"host_organization_lineage_names":["Oxford University Press","University of Oxford"],"type":"journal"},"license":"cc-by-nc","license_id":"https://openalex.org/licenses/cc-by-nc","version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Bioinformatics","raw_type":"journal-article"},"sustainable_development_goals":[],"awards":[],"funders":[],"has_content":{"pdf":true,"grobid_xml":true},"content_urls":{"pdf":"https://content.openalex.org/works/W2144658220.pdf","grobid_xml":"https://content.openalex.org/works/W2144658220.grobid-xml"},"referenced_works_count":17,"referenced_works":["https://openalex.org/W1503883746","https://openalex.org/W1525240758","https://openalex.org/W1932538605","https://openalex.org/W1983128758","https://openalex.org/W2019956985","https://openalex.org/W2064947972","https://openalex.org/W2098615058","https://openalex.org/W2108675597","https://openalex.org/W2109183238","https://openalex.org/W2118055782","https://openalex.org/W2120296271","https://openalex.org/W2125300654","https://openalex.org/W2131210485","https://openalex.org/W2134599124","https://openalex.org/W2156169823","https://openalex.org/W2157009743","https://openalex.org/W4210633230"],"related_works":["https://openalex.org/W2748952813","https://openalex.org/W2952954362","https://openalex.org/W3093602888","https://openalex.org/W3156045358","https://openalex.org/W2921578049","https://openalex.org/W2581424563","https://openalex.org/W2020599444","https://openalex.org/W2762052495","https://openalex.org/W1495737144","https://openalex.org/W2144634088"],"abstract_inverted_index":{"The":[0,12],"program":[1],"is":[2,14],"freely":[3,15],"available":[4,16],"from":[5],"http://www.mabs.at/ewing/msms/":[6],"along":[7],"with":[8],"manuals":[9],"and":[10],"examples.":[11],"source":[13],"under":[17],"a":[18],"GPL":[19],"type":[20],"license.":[21]},"counts_by_year":[{"year":2026,"cited_by_count":2},{"year":2025,"cited_by_count":11},{"year":2024,"cited_by_count":17},{"year":2023,"cited_by_count":16},{"year":2022,"cited_by_count":25},{"year":2021,"cited_by_count":32},{"year":2020,"cited_by_count":27},{"year":2019,"cited_by_count":25},{"year":2018,"cited_by_count":31},{"year":2017,"cited_by_count":40},{"year":2016,"cited_by_count":50},{"year":2015,"cited_by_count":42},{"year":2014,"cited_by_count":28},{"year":2013,"cited_by_count":34},{"year":2012,"cited_by_count":13}],"updated_date":"2026-04-21T08:09:41.155169","created_date":"2016-06-24T00:00:00"}
