{"id":"https://openalex.org/W2141728002","doi":"https://doi.org/10.1093/bioinformatics/btq316","title":"Single feature polymorphism detection using recombinant inbred line microarray expression data","display_name":"Single feature polymorphism detection using recombinant inbred line microarray expression data","publication_year":2010,"publication_date":"2010-06-23","ids":{"openalex":"https://openalex.org/W2141728002","doi":"https://doi.org/10.1093/bioinformatics/btq316","mag":"2141728002","pmid":"https://pubmed.ncbi.nlm.nih.gov/20576626"},"language":"en","primary_location":{"id":"doi:10.1093/bioinformatics/btq316","is_oa":true,"landing_page_url":"https://doi.org/10.1093/bioinformatics/btq316","pdf_url":"https://academic.oup.com/bioinformatics/article-pdf/26/16/1983/48855459/bioinformatics_26_16_1983.pdf","source":{"id":"https://openalex.org/S52395412","display_name":"Bioinformatics","issn_l":"1367-4803","issn":["1367-4803","1367-4811"],"is_oa":false,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310311648","host_organization_name":"Oxford University Press","host_organization_lineage":["https://openalex.org/P4310311648","https://openalex.org/P4310311647"],"host_organization_lineage_names":["Oxford University Press","University of Oxford"],"type":"journal"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Bioinformatics","raw_type":"journal-article"},"type":"article","indexed_in":["crossref","doaj","pubmed"],"open_access":{"is_oa":true,"oa_status":"bronze","oa_url":"https://academic.oup.com/bioinformatics/article-pdf/26/16/1983/48855459/bioinformatics_26_16_1983.pdf","any_repository_has_fulltext":false},"authorships":[{"author_position":"first","author":{"id":"https://openalex.org/A5065998053","display_name":"Xinping Cui","orcid":"https://orcid.org/0000-0002-1420-2696"},"institutions":[{"id":"https://openalex.org/I84218800","display_name":"University of California, Davis","ror":"https://ror.org/05rrcem69","country_code":"US","type":"education","lineage":["https://openalex.org/I84218800"]},{"id":"https://openalex.org/I103635307","display_name":"University of California, Riverside","ror":"https://ror.org/03nawhv43","country_code":"US","type":"education","lineage":["https://openalex.org/I103635307"]}],"countries":["US"],"is_corresponding":true,"raw_author_name":"Xinping Cui","raw_affiliation_strings":["1 Department of Statistics, 2Institute for Integrative Genome Biology and Center for Plant Cell Biology, 3Department of Botany and Plant Sciences, University of California, Riverside, 4Genome Center and Department of Plant Sciences and 5Seed Biotechnology Center, University of California, Davis, CA, USA"],"affiliations":[{"raw_affiliation_string":"1 Department of Statistics, 2Institute for Integrative Genome Biology and Center for Plant Cell Biology, 3Department of Botany and Plant Sciences, University of California, Riverside, 4Genome Center and Department of Plant Sciences and 5Seed Biotechnology Center, University of California, Davis, CA, USA","institution_ids":["https://openalex.org/I103635307","https://openalex.org/I84218800"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5103136437","display_name":"Na You","orcid":"https://orcid.org/0000-0001-8014-7229"},"institutions":[{"id":"https://openalex.org/I84218800","display_name":"University of California, Davis","ror":"https://ror.org/05rrcem69","country_code":"US","type":"education","lineage":["https://openalex.org/I84218800"]},{"id":"https://openalex.org/I103635307","display_name":"University of California, Riverside","ror":"https://ror.org/03nawhv43","country_code":"US","type":"education","lineage":["https://openalex.org/I103635307"]}],"countries":["US"],"is_corresponding":false,"raw_author_name":"Na You","raw_affiliation_strings":["1 Department of Statistics, 2Institute for Integrative Genome Biology and Center for Plant Cell Biology, 3Department of Botany and Plant Sciences, University of California, Riverside, 4Genome Center and Department of Plant Sciences and 5Seed Biotechnology Center, University of California, Davis, CA, USA"],"affiliations":[{"raw_affiliation_string":"1 Department of Statistics, 2Institute for Integrative Genome Biology and Center for Plant Cell Biology, 3Department of Botany and Plant Sciences, University of California, Riverside, 4Genome Center and Department of Plant Sciences and 5Seed Biotechnology Center, University of California, Davis, CA, USA","institution_ids":["https://openalex.org/I103635307","https://openalex.org/I84218800"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5039923525","display_name":"Thomas Girke","orcid":"https://orcid.org/0000-0003-0710-3777"},"institutions":[{"id":"https://openalex.org/I103635307","display_name":"University of California, Riverside","ror":"https://ror.org/03nawhv43","country_code":"US","type":"education","lineage":["https://openalex.org/I103635307"]},{"id":"https://openalex.org/I84218800","display_name":"University of California, Davis","ror":"https://ror.org/05rrcem69","country_code":"US","type":"education","lineage":["https://openalex.org/I84218800"]}],"countries":["US"],"is_corresponding":false,"raw_author_name":"Thomas Girke","raw_affiliation_strings":["1 Department of Statistics, 2Institute for Integrative Genome Biology and Center for Plant Cell Biology, 3Department of Botany and Plant Sciences, University of California, Riverside, 4Genome Center and Department of Plant Sciences and 5Seed Biotechnology Center, University of California, Davis, CA, USA"],"affiliations":[{"raw_affiliation_string":"1 Department of Statistics, 2Institute for Integrative Genome Biology and Center for Plant Cell Biology, 3Department of Botany and Plant Sciences, University of California, Riverside, 4Genome Center and Department of Plant Sciences and 5Seed Biotechnology Center, University of California, Davis, CA, USA","institution_ids":["https://openalex.org/I103635307","https://openalex.org/I84218800"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5017632047","display_name":"Richard W. Michelmore","orcid":"https://orcid.org/0000-0002-7512-592X"},"institutions":[{"id":"https://openalex.org/I103635307","display_name":"University of California, Riverside","ror":"https://ror.org/03nawhv43","country_code":"US","type":"education","lineage":["https://openalex.org/I103635307"]},{"id":"https://openalex.org/I84218800","display_name":"University of California, Davis","ror":"https://ror.org/05rrcem69","country_code":"US","type":"education","lineage":["https://openalex.org/I84218800"]}],"countries":["US"],"is_corresponding":false,"raw_author_name":"Richard Michelmore","raw_affiliation_strings":["1 Department of Statistics, 2Institute for Integrative Genome Biology and Center for Plant Cell Biology, 3Department of Botany and Plant Sciences, University of California, Riverside, 4Genome Center and Department of Plant Sciences and 5Seed Biotechnology Center, University of California, Davis, CA, USA"],"affiliations":[{"raw_affiliation_string":"1 Department of Statistics, 2Institute for Integrative Genome Biology and Center for Plant Cell Biology, 3Department of Botany and Plant Sciences, University of California, Riverside, 4Genome Center and Department of Plant Sciences and 5Seed Biotechnology Center, University of California, Davis, CA, USA","institution_ids":["https://openalex.org/I103635307","https://openalex.org/I84218800"]}]},{"author_position":"last","author":{"id":"https://openalex.org/A5005462976","display_name":"Allen Van Deynze","orcid":"https://orcid.org/0000-0002-2093-0577"},"institutions":[{"id":"https://openalex.org/I103635307","display_name":"University of California, Riverside","ror":"https://ror.org/03nawhv43","country_code":"US","type":"education","lineage":["https://openalex.org/I103635307"]},{"id":"https://openalex.org/I84218800","display_name":"University of California, Davis","ror":"https://ror.org/05rrcem69","country_code":"US","type":"education","lineage":["https://openalex.org/I84218800"]}],"countries":["US"],"is_corresponding":false,"raw_author_name":"Allen Van Deynze","raw_affiliation_strings":["1 Department of Statistics, 2Institute for Integrative Genome Biology and Center for Plant Cell Biology, 3Department of Botany and Plant Sciences, University of California, Riverside, 4Genome Center and Department of Plant Sciences and 5Seed Biotechnology Center, University of California, Davis, CA, USA"],"affiliations":[{"raw_affiliation_string":"1 Department of Statistics, 2Institute for Integrative Genome Biology and Center for Plant Cell Biology, 3Department of Botany and Plant Sciences, University of California, Riverside, 4Genome Center and Department of Plant Sciences and 5Seed Biotechnology Center, University of California, Davis, CA, USA","institution_ids":["https://openalex.org/I103635307","https://openalex.org/I84218800"]}]}],"institutions":[],"countries_distinct_count":1,"institutions_distinct_count":5,"corresponding_author_ids":["https://openalex.org/A5065998053"],"corresponding_institution_ids":["https://openalex.org/I103635307","https://openalex.org/I84218800"],"apc_list":{"value":3618,"currency":"USD","value_usd":3618},"apc_paid":null,"fwci":0.1322,"has_fulltext":false,"cited_by_count":1,"citation_normalized_percentile":{"value":0.54047114,"is_in_top_1_percent":false,"is_in_top_10_percent":false},"cited_by_percentile_year":{"min":89,"max":94},"biblio":{"volume":"26","issue":"16","first_page":"1983","last_page":"1989"},"is_retracted":false,"is_paratext":false,"is_xpac":false,"primary_topic":{"id":"https://openalex.org/T10885","display_name":"Gene expression and cancer classification","score":0.9990000128746033,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},"topics":[{"id":"https://openalex.org/T10885","display_name":"Gene expression and cancer classification","score":0.9990000128746033,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},{"id":"https://openalex.org/T11468","display_name":"Genetic Mapping and Diversity in Plants and Animals","score":0.9951000213623047,"subfield":{"id":"https://openalex.org/subfields/1311","display_name":"Genetics"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},{"id":"https://openalex.org/T11970","display_name":"Molecular Biology Techniques and Applications","score":0.9839000105857849,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}}],"keywords":[{"id":"https://openalex.org/keywords/feature","display_name":"Feature (linguistics)","score":0.5779378414154053},{"id":"https://openalex.org/keywords/recombinant-dna","display_name":"Recombinant DNA","score":0.5364310145378113},{"id":"https://openalex.org/keywords/line","display_name":"Line (geometry)","score":0.48981305956840515},{"id":"https://openalex.org/keywords/computational-biology","display_name":"Computational biology","score":0.47512346506118774},{"id":"https://openalex.org/keywords/inbred-strain","display_name":"Inbred strain","score":0.46843892335891724},{"id":"https://openalex.org/keywords/genetics","display_name":"Genetics","score":0.4575807452201843},{"id":"https://openalex.org/keywords/microarray","display_name":"Microarray","score":0.4510377049446106},{"id":"https://openalex.org/keywords/biology","display_name":"Biology","score":0.4489419758319855},{"id":"https://openalex.org/keywords/polymorphism","display_name":"Polymorphism (computer science)","score":0.411630243062973},{"id":"https://openalex.org/keywords/computer-science","display_name":"Computer science","score":0.4026455581188202},{"id":"https://openalex.org/keywords/gene-expression","display_name":"Gene expression","score":0.35002467036247253},{"id":"https://openalex.org/keywords/gene","display_name":"Gene","score":0.2630525529384613},{"id":"https://openalex.org/keywords/genotype","display_name":"Genotype","score":0.1966657042503357},{"id":"https://openalex.org/keywords/mathematics","display_name":"Mathematics","score":0.11224648356437683}],"concepts":[{"id":"https://openalex.org/C2776401178","wikidata":"https://www.wikidata.org/wiki/Q12050496","display_name":"Feature (linguistics)","level":2,"score":0.5779378414154053},{"id":"https://openalex.org/C40767141","wikidata":"https://www.wikidata.org/wiki/Q285697","display_name":"Recombinant DNA","level":3,"score":0.5364310145378113},{"id":"https://openalex.org/C198352243","wikidata":"https://www.wikidata.org/wiki/Q37105","display_name":"Line (geometry)","level":2,"score":0.48981305956840515},{"id":"https://openalex.org/C70721500","wikidata":"https://www.wikidata.org/wiki/Q177005","display_name":"Computational biology","level":1,"score":0.47512346506118774},{"id":"https://openalex.org/C76725341","wikidata":"https://www.wikidata.org/wiki/Q1893126","display_name":"Inbred strain","level":3,"score":0.46843892335891724},{"id":"https://openalex.org/C54355233","wikidata":"https://www.wikidata.org/wiki/Q7162","display_name":"Genetics","level":1,"score":0.4575807452201843},{"id":"https://openalex.org/C186836561","wikidata":"https://www.wikidata.org/wiki/Q1931516","display_name":"Microarray","level":4,"score":0.4510377049446106},{"id":"https://openalex.org/C86803240","wikidata":"https://www.wikidata.org/wiki/Q420","display_name":"Biology","level":0,"score":0.4489419758319855},{"id":"https://openalex.org/C149737253","wikidata":"https://www.wikidata.org/wiki/Q3240252","display_name":"Polymorphism (computer science)","level":4,"score":0.411630243062973},{"id":"https://openalex.org/C41008148","wikidata":"https://www.wikidata.org/wiki/Q21198","display_name":"Computer science","level":0,"score":0.4026455581188202},{"id":"https://openalex.org/C150194340","wikidata":"https://www.wikidata.org/wiki/Q26972","display_name":"Gene expression","level":3,"score":0.35002467036247253},{"id":"https://openalex.org/C104317684","wikidata":"https://www.wikidata.org/wiki/Q7187","display_name":"Gene","level":2,"score":0.2630525529384613},{"id":"https://openalex.org/C135763542","wikidata":"https://www.wikidata.org/wiki/Q106016","display_name":"Genotype","level":3,"score":0.1966657042503357},{"id":"https://openalex.org/C33923547","wikidata":"https://www.wikidata.org/wiki/Q395","display_name":"Mathematics","level":0,"score":0.11224648356437683},{"id":"https://openalex.org/C138885662","wikidata":"https://www.wikidata.org/wiki/Q5891","display_name":"Philosophy","level":0,"score":0.0},{"id":"https://openalex.org/C2524010","wikidata":"https://www.wikidata.org/wiki/Q8087","display_name":"Geometry","level":1,"score":0.0},{"id":"https://openalex.org/C41895202","wikidata":"https://www.wikidata.org/wiki/Q8162","display_name":"Linguistics","level":1,"score":0.0}],"mesh":[{"descriptor_ui":"D002874","descriptor_name":"Chromosome Mapping","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D002874","descriptor_name":"Chromosome Mapping","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D002874","descriptor_name":"Chromosome Mapping","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D011110","descriptor_name":"Polymorphism, Genetic","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D011110","descriptor_name":"Polymorphism, Genetic","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D011110","descriptor_name":"Polymorphism, Genetic","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D019295","descriptor_name":"Computational Biology","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D019295","descriptor_name":"Computational Biology","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D019295","descriptor_name":"Computational Biology","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D020411","descriptor_name":"Oligonucleotide Array Sequence Analysis","qualifier_ui":"Q000379","qualifier_name":"methods","is_major_topic":false},{"descriptor_ui":"D020411","descriptor_name":"Oligonucleotide Array Sequence Analysis","qualifier_ui":"Q000379","qualifier_name":"methods","is_major_topic":false},{"descriptor_ui":"D020411","descriptor_name":"Oligonucleotide Array Sequence Analysis","qualifier_ui":"Q000379","qualifier_name":"methods","is_major_topic":false},{"descriptor_ui":"D020869","descriptor_name":"Gene Expression Profiling","qualifier_ui":"Q000379","qualifier_name":"methods","is_major_topic":false},{"descriptor_ui":"D020869","descriptor_name":"Gene Expression Profiling","qualifier_ui":"Q000379","qualifier_name":"methods","is_major_topic":false},{"descriptor_ui":"D020869","descriptor_name":"Gene Expression Profiling","qualifier_ui":"Q000379","qualifier_name":"methods","is_major_topic":false},{"descriptor_ui":"D023281","descriptor_name":"Genomics","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D023281","descriptor_name":"Genomics","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D023281","descriptor_name":"Genomics","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false}],"locations_count":2,"locations":[{"id":"doi:10.1093/bioinformatics/btq316","is_oa":true,"landing_page_url":"https://doi.org/10.1093/bioinformatics/btq316","pdf_url":"https://academic.oup.com/bioinformatics/article-pdf/26/16/1983/48855459/bioinformatics_26_16_1983.pdf","source":{"id":"https://openalex.org/S52395412","display_name":"Bioinformatics","issn_l":"1367-4803","issn":["1367-4803","1367-4811"],"is_oa":false,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310311648","host_organization_name":"Oxford University Press","host_organization_lineage":["https://openalex.org/P4310311648","https://openalex.org/P4310311647"],"host_organization_lineage_names":["Oxford University Press","University of Oxford"],"type":"journal"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Bioinformatics","raw_type":"journal-article"},{"id":"pmid:20576626","is_oa":false,"landing_page_url":"https://pubmed.ncbi.nlm.nih.gov/20576626","pdf_url":null,"source":{"id":"https://openalex.org/S4306525036","display_name":"PubMed","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I1299303238","host_organization_name":"National Institutes of Health","host_organization_lineage":["https://openalex.org/I1299303238"],"host_organization_lineage_names":[],"type":"repository"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Bioinformatics (Oxford, England)","raw_type":null}],"best_oa_location":{"id":"doi:10.1093/bioinformatics/btq316","is_oa":true,"landing_page_url":"https://doi.org/10.1093/bioinformatics/btq316","pdf_url":"https://academic.oup.com/bioinformatics/article-pdf/26/16/1983/48855459/bioinformatics_26_16_1983.pdf","source":{"id":"https://openalex.org/S52395412","display_name":"Bioinformatics","issn_l":"1367-4803","issn":["1367-4803","1367-4811"],"is_oa":false,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310311648","host_organization_name":"Oxford University Press","host_organization_lineage":["https://openalex.org/P4310311648","https://openalex.org/P4310311647"],"host_organization_lineage_names":["Oxford University Press","University of Oxford"],"type":"journal"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Bioinformatics","raw_type":"journal-article"},"sustainable_development_goals":[],"awards":[],"funders":[],"has_content":{"pdf":true,"grobid_xml":true},"content_urls":{"pdf":"https://content.openalex.org/works/W2141728002.pdf","grobid_xml":"https://content.openalex.org/works/W2141728002.grobid-xml"},"referenced_works_count":40,"referenced_works":["https://openalex.org/W1493454437","https://openalex.org/W1576534100","https://openalex.org/W1975588386","https://openalex.org/W1980332172","https://openalex.org/W1981575121","https://openalex.org/W1987940356","https://openalex.org/W1988185025","https://openalex.org/W1995945562","https://openalex.org/W1997817740","https://openalex.org/W2002462832","https://openalex.org/W2008900180","https://openalex.org/W2017488124","https://openalex.org/W2051745993","https://openalex.org/W2060057689","https://openalex.org/W2073970020","https://openalex.org/W2076210386","https://openalex.org/W2086104696","https://openalex.org/W2088175650","https://openalex.org/W2103441770","https://openalex.org/W2110065044","https://openalex.org/W2119896452","https://openalex.org/W2122519612","https://openalex.org/W2127491672","https://openalex.org/W2127515057","https://openalex.org/W2130494035","https://openalex.org/W2134556593","https://openalex.org/W2134666031","https://openalex.org/W2138121233","https://openalex.org/W2144894481","https://openalex.org/W2154167627","https://openalex.org/W2158718019","https://openalex.org/W2161724277","https://openalex.org/W2161952084","https://openalex.org/W2166862189","https://openalex.org/W2170989872","https://openalex.org/W2999729612","https://openalex.org/W3106889297","https://openalex.org/W4247420482","https://openalex.org/W4253352720","https://openalex.org/W6672105201"],"related_works":["https://openalex.org/W2274607931","https://openalex.org/W4385690213","https://openalex.org/W4206192742","https://openalex.org/W2367910728","https://openalex.org/W2107405807","https://openalex.org/W2388596151","https://openalex.org/W2380955571","https://openalex.org/W2377147155","https://openalex.org/W2371687929","https://openalex.org/W2390648675"],"abstract_inverted_index":{"The":[0],"R":[1],"package":[2],"'dipSFP'":[3],"can":[4],"be":[5],"downloaded":[6],"from":[7],"http://sites.google.com/a/bioinformatics.ucr.edu/xinping-cui/home/software.":[8]},"counts_by_year":[{"year":2013,"cited_by_count":1}],"updated_date":"2025-11-06T03:46:38.306776","created_date":"2025-10-10T00:00:00"}
