{"id":"https://openalex.org/W2150515766","doi":"https://doi.org/10.1093/bioinformatics/btq305","title":"Efficient learning of microbial genotype\u2013phenotype association rules","display_name":"Efficient learning of microbial genotype\u2013phenotype association rules","publication_year":2010,"publication_date":"2010-06-06","ids":{"openalex":"https://openalex.org/W2150515766","doi":"https://doi.org/10.1093/bioinformatics/btq305","mag":"2150515766","pmid":"https://pubmed.ncbi.nlm.nih.gov/20529891"},"language":"en","primary_location":{"id":"doi:10.1093/bioinformatics/btq305","is_oa":true,"landing_page_url":"https://doi.org/10.1093/bioinformatics/btq305","pdf_url":"https://academic.oup.com/bioinformatics/article-pdf/26/15/1834/48852841/bioinformatics_26_15_1834.pdf","source":{"id":"https://openalex.org/S52395412","display_name":"Bioinformatics","issn_l":"1367-4803","issn":["1367-4803","1367-4811"],"is_oa":false,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310311648","host_organization_name":"Oxford University Press","host_organization_lineage":["https://openalex.org/P4310311648","https://openalex.org/P4310311647"],"host_organization_lineage_names":["Oxford University Press","University of Oxford"],"type":"journal"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Bioinformatics","raw_type":"journal-article"},"type":"article","indexed_in":["crossref","doaj","pubmed"],"open_access":{"is_oa":true,"oa_status":"bronze","oa_url":"https://academic.oup.com/bioinformatics/article-pdf/26/15/1834/48852841/bioinformatics_26_15_1834.pdf","any_repository_has_fulltext":false},"authorships":[{"author_position":"first","author":{"id":"https://openalex.org/A5112172563","display_name":"Norman Macdonald","orcid":null},"institutions":[{"id":"https://openalex.org/I129902397","display_name":"Dalhousie University","ror":"https://ror.org/01e6qks80","country_code":"CA","type":"education","lineage":["https://openalex.org/I129902397"]}],"countries":["CA"],"is_corresponding":false,"raw_author_name":"Norman J. MacDonald","raw_affiliation_strings":["Faculty of Computer Science, Dalhousie University, Halifax, NS, Canada"],"affiliations":[{"raw_affiliation_string":"Faculty of Computer Science, Dalhousie University, Halifax, NS, Canada","institution_ids":["https://openalex.org/I129902397"]}]},{"author_position":"last","author":{"id":"https://openalex.org/A5063083987","display_name":"Robert G. Beiko","orcid":"https://orcid.org/0000-0002-5065-4980"},"institutions":[{"id":"https://openalex.org/I129902397","display_name":"Dalhousie University","ror":"https://ror.org/01e6qks80","country_code":"CA","type":"education","lineage":["https://openalex.org/I129902397"]}],"countries":["CA"],"is_corresponding":true,"raw_author_name":"Robert G. Beiko","raw_affiliation_strings":["Faculty of Computer Science, Dalhousie University, Halifax, NS, Canada"],"affiliations":[{"raw_affiliation_string":"Faculty of Computer Science, Dalhousie University, Halifax, NS, Canada","institution_ids":["https://openalex.org/I129902397"]}]}],"institutions":[],"countries_distinct_count":1,"institutions_distinct_count":2,"corresponding_author_ids":["https://openalex.org/A5063083987"],"corresponding_institution_ids":["https://openalex.org/I129902397"],"apc_list":{"value":3618,"currency":"USD","value_usd":3618},"apc_paid":null,"fwci":1.3553,"has_fulltext":false,"cited_by_count":29,"citation_normalized_percentile":{"value":0.80265982,"is_in_top_1_percent":false,"is_in_top_10_percent":false},"cited_by_percentile_year":{"min":89,"max":99},"biblio":{"volume":"26","issue":"15","first_page":"1834","last_page":"1840"},"is_retracted":false,"is_paratext":false,"is_xpac":false,"primary_topic":{"id":"https://openalex.org/T10015","display_name":"Genomics and Phylogenetic Studies","score":0.9994000196456909,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},"topics":[{"id":"https://openalex.org/T10015","display_name":"Genomics and Phylogenetic Studies","score":0.9994000196456909,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},{"id":"https://openalex.org/T10885","display_name":"Gene expression and cancer classification","score":0.9958999752998352,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},{"id":"https://openalex.org/T12254","display_name":"Machine Learning in Bioinformatics","score":0.9940999746322632,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}}],"keywords":[{"id":"https://openalex.org/keywords/biology","display_name":"Biology","score":0.5886030197143555},{"id":"https://openalex.org/keywords/phenotype","display_name":"Phenotype","score":0.5713450908660889},{"id":"https://openalex.org/keywords/association","display_name":"Association (psychology)","score":0.5263869762420654},{"id":"https://openalex.org/keywords/computational-biology","display_name":"Computational biology","score":0.5179876089096069},{"id":"https://openalex.org/keywords/phylogenetic-tree","display_name":"Phylogenetic tree","score":0.5156322717666626},{"id":"https://openalex.org/keywords/genotype","display_name":"Genotype","score":0.49758127331733704},{"id":"https://openalex.org/keywords/genome-wide-association-study","display_name":"Genome-wide association study","score":0.451386034488678},{"id":"https://openalex.org/keywords/association-rule-learning","display_name":"Association rule learning","score":0.4438104033470154},{"id":"https://openalex.org/keywords/genetic-association","display_name":"Genetic association","score":0.4309566020965576},{"id":"https://openalex.org/keywords/genotype-phenotype-distinction","display_name":"Genotype-phenotype distinction","score":0.4198358654975891},{"id":"https://openalex.org/keywords/gene","display_name":"Gene","score":0.4129624366760254},{"id":"https://openalex.org/keywords/genetics","display_name":"Genetics","score":0.4001510739326477},{"id":"https://openalex.org/keywords/data-mining","display_name":"Data mining","score":0.30865341424942017},{"id":"https://openalex.org/keywords/computer-science","display_name":"Computer science","score":0.282632052898407},{"id":"https://openalex.org/keywords/single-nucleotide-polymorphism","display_name":"Single-nucleotide polymorphism","score":0.14494198560714722},{"id":"https://openalex.org/keywords/psychology","display_name":"Psychology","score":0.0694589614868164}],"concepts":[{"id":"https://openalex.org/C86803240","wikidata":"https://www.wikidata.org/wiki/Q420","display_name":"Biology","level":0,"score":0.5886030197143555},{"id":"https://openalex.org/C127716648","wikidata":"https://www.wikidata.org/wiki/Q104053","display_name":"Phenotype","level":3,"score":0.5713450908660889},{"id":"https://openalex.org/C142853389","wikidata":"https://www.wikidata.org/wiki/Q744778","display_name":"Association (psychology)","level":2,"score":0.5263869762420654},{"id":"https://openalex.org/C70721500","wikidata":"https://www.wikidata.org/wiki/Q177005","display_name":"Computational biology","level":1,"score":0.5179876089096069},{"id":"https://openalex.org/C193252679","wikidata":"https://www.wikidata.org/wiki/Q242125","display_name":"Phylogenetic tree","level":3,"score":0.5156322717666626},{"id":"https://openalex.org/C135763542","wikidata":"https://www.wikidata.org/wiki/Q106016","display_name":"Genotype","level":3,"score":0.49758127331733704},{"id":"https://openalex.org/C106208931","wikidata":"https://www.wikidata.org/wiki/Q1098876","display_name":"Genome-wide association study","level":5,"score":0.451386034488678},{"id":"https://openalex.org/C193524817","wikidata":"https://www.wikidata.org/wiki/Q386780","display_name":"Association rule learning","level":2,"score":0.4438104033470154},{"id":"https://openalex.org/C186413461","wikidata":"https://www.wikidata.org/wiki/Q744727","display_name":"Genetic association","level":5,"score":0.4309566020965576},{"id":"https://openalex.org/C200844832","wikidata":"https://www.wikidata.org/wiki/Q5533517","display_name":"Genotype-phenotype distinction","level":4,"score":0.4198358654975891},{"id":"https://openalex.org/C104317684","wikidata":"https://www.wikidata.org/wiki/Q7187","display_name":"Gene","level":2,"score":0.4129624366760254},{"id":"https://openalex.org/C54355233","wikidata":"https://www.wikidata.org/wiki/Q7162","display_name":"Genetics","level":1,"score":0.4001510739326477},{"id":"https://openalex.org/C124101348","wikidata":"https://www.wikidata.org/wiki/Q172491","display_name":"Data mining","level":1,"score":0.30865341424942017},{"id":"https://openalex.org/C41008148","wikidata":"https://www.wikidata.org/wiki/Q21198","display_name":"Computer science","level":0,"score":0.282632052898407},{"id":"https://openalex.org/C153209595","wikidata":"https://www.wikidata.org/wiki/Q501128","display_name":"Single-nucleotide polymorphism","level":4,"score":0.14494198560714722},{"id":"https://openalex.org/C15744967","wikidata":"https://www.wikidata.org/wiki/Q9418","display_name":"Psychology","level":0,"score":0.0694589614868164},{"id":"https://openalex.org/C542102704","wikidata":"https://www.wikidata.org/wiki/Q183257","display_name":"Psychotherapist","level":1,"score":0.0}],"mesh":[{"descriptor_ui":"D000465","descriptor_name":"Algorithms","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D000465","descriptor_name":"Algorithms","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D000465","descriptor_name":"Algorithms","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D012984","descriptor_name":"Software","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D012984","descriptor_name":"Software","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D012984","descriptor_name":"Software","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D016680","descriptor_name":"Genome, Bacterial","qualifier_ui":"Q000235","qualifier_name":"genetics","is_major_topic":false},{"descriptor_ui":"D016680","descriptor_name":"Genome, Bacterial","qualifier_ui":"Q000235","qualifier_name":"genetics","is_major_topic":false},{"descriptor_ui":"D016680","descriptor_name":"Genome, Bacterial","qualifier_ui":"Q000235","qualifier_name":"genetics","is_major_topic":false},{"descriptor_ui":"D056726","descriptor_name":"Genetic Association Studies","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D056726","descriptor_name":"Genetic Association Studies","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D056726","descriptor_name":"Genetic Association Studies","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true}],"locations_count":3,"locations":[{"id":"doi:10.1093/bioinformatics/btq305","is_oa":true,"landing_page_url":"https://doi.org/10.1093/bioinformatics/btq305","pdf_url":"https://academic.oup.com/bioinformatics/article-pdf/26/15/1834/48852841/bioinformatics_26_15_1834.pdf","source":{"id":"https://openalex.org/S52395412","display_name":"Bioinformatics","issn_l":"1367-4803","issn":["1367-4803","1367-4811"],"is_oa":false,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310311648","host_organization_name":"Oxford University Press","host_organization_lineage":["https://openalex.org/P4310311648","https://openalex.org/P4310311647"],"host_organization_lineage_names":["Oxford University Press","University of Oxford"],"type":"journal"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Bioinformatics","raw_type":"journal-article"},{"id":"pmid:20529891","is_oa":false,"landing_page_url":"https://pubmed.ncbi.nlm.nih.gov/20529891","pdf_url":null,"source":{"id":"https://openalex.org/S4306525036","display_name":"PubMed","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I1299303238","host_organization_name":"National Institutes of Health","host_organization_lineage":["https://openalex.org/I1299303238"],"host_organization_lineage_names":[],"type":"repository"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Bioinformatics (Oxford, England)","raw_type":null},{"id":"pmh:oai:CiteSeerX.psu:10.1.1.899.3619","is_oa":false,"landing_page_url":"http://citeseerx.ist.psu.edu/viewdoc/summary?doi=10.1.1.899.3619","pdf_url":null,"source":null,"license":null,"license_id":null,"version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":"http://bioinformatics.oxfordjournals.org/content/early/2010/06/06/bioinformatics.btq305.full.pdf","raw_type":"text"}],"best_oa_location":{"id":"doi:10.1093/bioinformatics/btq305","is_oa":true,"landing_page_url":"https://doi.org/10.1093/bioinformatics/btq305","pdf_url":"https://academic.oup.com/bioinformatics/article-pdf/26/15/1834/48852841/bioinformatics_26_15_1834.pdf","source":{"id":"https://openalex.org/S52395412","display_name":"Bioinformatics","issn_l":"1367-4803","issn":["1367-4803","1367-4811"],"is_oa":false,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310311648","host_organization_name":"Oxford University Press","host_organization_lineage":["https://openalex.org/P4310311648","https://openalex.org/P4310311647"],"host_organization_lineage_names":["Oxford University Press","University of Oxford"],"type":"journal"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Bioinformatics","raw_type":"journal-article"},"sustainable_development_goals":[],"awards":[],"funders":[],"has_content":{"grobid_xml":true,"pdf":true},"content_urls":{"pdf":"https://content.openalex.org/works/W2150515766.pdf","grobid_xml":"https://content.openalex.org/works/W2150515766.grobid-xml"},"referenced_works_count":49,"referenced_works":["https://openalex.org/W1488393970","https://openalex.org/W1531743498","https://openalex.org/W1623342295","https://openalex.org/W1629931862","https://openalex.org/W1917795079","https://openalex.org/W1971158963","https://openalex.org/W1972785704","https://openalex.org/W1983447033","https://openalex.org/W1990453950","https://openalex.org/W2036004110","https://openalex.org/W2038397024","https://openalex.org/W2052001298","https://openalex.org/W2057885377","https://openalex.org/W2066520145","https://openalex.org/W2067853474","https://openalex.org/W2069769252","https://openalex.org/W2079735743","https://openalex.org/W2084872146","https://openalex.org/W2090385974","https://openalex.org/W2097126893","https://openalex.org/W2099111195","https://openalex.org/W2102697952","https://openalex.org/W2104692905","https://openalex.org/W2107432340","https://openalex.org/W2109464129","https://openalex.org/W2113613985","https://openalex.org/W2143426320","https://openalex.org/W2149454242","https://openalex.org/W2152075122","https://openalex.org/W2153635508","https://openalex.org/W2154364831","https://openalex.org/W2154642793","https://openalex.org/W2155606054","https://openalex.org/W2157668625","https://openalex.org/W2159308620","https://openalex.org/W2166559705","https://openalex.org/W2478708596","https://openalex.org/W2499586571","https://openalex.org/W2911640577","https://openalex.org/W2997674406","https://openalex.org/W2998216295","https://openalex.org/W3120421331","https://openalex.org/W4252706339","https://openalex.org/W4285719527","https://openalex.org/W4388245928","https://openalex.org/W6631927713","https://openalex.org/W6682496738","https://openalex.org/W6682837551","https://openalex.org/W7066667914"],"related_works":["https://openalex.org/W1971424770","https://openalex.org/W2111842731","https://openalex.org/W2066467839","https://openalex.org/W2594299395","https://openalex.org/W2771541573","https://openalex.org/W2765794416","https://openalex.org/W1486217206","https://openalex.org/W2170506381","https://openalex.org/W2794350630","https://openalex.org/W2089097350"],"abstract_inverted_index":{"Software":[0],"implemented":[1],"for":[2],"this":[3],"study":[4],"is":[5],"available":[6],"under":[7],"the":[8,15],"Creative":[9],"Commons":[10],"Attribution":[11],"3.0":[12],"license":[13],"from":[14],"author":[16],"at":[17],"http://kiwi.cs.dal.ca/Software/PICA":[18]},"counts_by_year":[{"year":2026,"cited_by_count":1},{"year":2025,"cited_by_count":2},{"year":2024,"cited_by_count":1},{"year":2023,"cited_by_count":1},{"year":2021,"cited_by_count":1},{"year":2018,"cited_by_count":2},{"year":2017,"cited_by_count":1},{"year":2016,"cited_by_count":4},{"year":2015,"cited_by_count":2},{"year":2014,"cited_by_count":4},{"year":2013,"cited_by_count":5},{"year":2012,"cited_by_count":4}],"updated_date":"2026-04-04T16:13:02.066488","created_date":"2025-10-10T00:00:00"}