{"id":"https://openalex.org/W2168614088","doi":"https://doi.org/10.1093/bioinformatics/btq304","title":"Cloud-Coffee: implementation of a parallel consistency-based multiple alignment algorithm in the T-Coffee package and its benchmarking on the Amazon Elastic-Cloud","display_name":"Cloud-Coffee: implementation of a parallel consistency-based multiple alignment algorithm in the T-Coffee package and its benchmarking on the Amazon Elastic-Cloud","publication_year":2010,"publication_date":"2010-07-06","ids":{"openalex":"https://openalex.org/W2168614088","doi":"https://doi.org/10.1093/bioinformatics/btq304","mag":"2168614088","pmid":"https://pubmed.ncbi.nlm.nih.gov/20605929"},"language":"en","primary_location":{"id":"doi:10.1093/bioinformatics/btq304","is_oa":true,"landing_page_url":"https://doi.org/10.1093/bioinformatics/btq304","pdf_url":"https://academic.oup.com/bioinformatics/article-pdf/26/15/1903/467181/btq304.pdf","source":{"id":"https://openalex.org/S52395412","display_name":"Bioinformatics","issn_l":"1367-4803","issn":["1367-4803","1367-4811"],"is_oa":false,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310311648","host_organization_name":"Oxford University Press","host_organization_lineage":["https://openalex.org/P4310311648","https://openalex.org/P4310311647"],"host_organization_lineage_names":["Oxford University Press","University of Oxford"],"type":"journal"},"license":"cc-by-nc","license_id":"https://openalex.org/licenses/cc-by-nc","version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Bioinformatics","raw_type":"journal-article"},"type":"article","indexed_in":["crossref","doaj","pubmed"],"open_access":{"is_oa":true,"oa_status":"hybrid","oa_url":"https://academic.oup.com/bioinformatics/article-pdf/26/15/1903/467181/btq304.pdf","any_repository_has_fulltext":true},"authorships":[{"author_position":"first","author":{"id":"https://openalex.org/A5044258205","display_name":"Paolo Di Tommaso","orcid":"https://orcid.org/0000-0003-3220-0253"},"institutions":[{"id":"https://openalex.org/I15766328","display_name":"Universitat de Lleida","ror":"https://ror.org/050c3cw24","country_code":"ES","type":"education","lineage":["https://openalex.org/I15766328"]},{"id":"https://openalex.org/I170486558","display_name":"Pompeu Fabra University","ror":"https://ror.org/04n0g0b29","country_code":"ES","type":"education","lineage":["https://openalex.org/I170486558"]}],"countries":["ES"],"is_corresponding":false,"raw_author_name":"Paolo Di Tommaso","raw_affiliation_strings":["1 Centre For Genomic Regulation (Pompeu Fabra University), Carrer del Doctor Aiguader 88, 08003 Barcelona, 2Department of Computer Science and Industrial Engineering, University of Lleida, Campus de Cappont, C. de Jaume II 69, E-25001 Lleida and 3Department of Computer Architecture and Operating Systems, Universitad Autonoma de Barcelona, Campus UAB, Edifici Q, 08193 Bellaterra (Barcelona), Spain"],"affiliations":[{"raw_affiliation_string":"1 Centre For Genomic Regulation (Pompeu Fabra University), Carrer del Doctor Aiguader 88, 08003 Barcelona, 2Department of Computer Science and Industrial Engineering, University of Lleida, Campus de Cappont, C. de Jaume II 69, E-25001 Lleida and 3Department of Computer Architecture and Operating Systems, Universitad Autonoma de Barcelona, Campus UAB, Edifici Q, 08193 Bellaterra (Barcelona), Spain","institution_ids":["https://openalex.org/I170486558","https://openalex.org/I15766328"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5061024368","display_name":"Miquel Orobitg","orcid":"https://orcid.org/0000-0002-6106-2403"},"institutions":[{"id":"https://openalex.org/I170486558","display_name":"Pompeu Fabra University","ror":"https://ror.org/04n0g0b29","country_code":"ES","type":"education","lineage":["https://openalex.org/I170486558"]},{"id":"https://openalex.org/I15766328","display_name":"Universitat de Lleida","ror":"https://ror.org/050c3cw24","country_code":"ES","type":"education","lineage":["https://openalex.org/I15766328"]}],"countries":["ES"],"is_corresponding":false,"raw_author_name":"Miquel Orobitg","raw_affiliation_strings":["1 Centre For Genomic Regulation (Pompeu Fabra University), Carrer del Doctor Aiguader 88, 08003 Barcelona, 2Department of Computer Science and Industrial Engineering, University of Lleida, Campus de Cappont, C. de Jaume II 69, E-25001 Lleida and 3Department of Computer Architecture and Operating Systems, Universitad Autonoma de Barcelona, Campus UAB, Edifici Q, 08193 Bellaterra (Barcelona), Spain"],"affiliations":[{"raw_affiliation_string":"1 Centre For Genomic Regulation (Pompeu Fabra University), Carrer del Doctor Aiguader 88, 08003 Barcelona, 2Department of Computer Science and Industrial Engineering, University of Lleida, Campus de Cappont, C. de Jaume II 69, E-25001 Lleida and 3Department of Computer Architecture and Operating Systems, Universitad Autonoma de Barcelona, Campus UAB, Edifici Q, 08193 Bellaterra (Barcelona), Spain","institution_ids":["https://openalex.org/I170486558","https://openalex.org/I15766328"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5081297325","display_name":"Fernando Guirado","orcid":"https://orcid.org/0000-0003-1352-9555"},"institutions":[{"id":"https://openalex.org/I15766328","display_name":"Universitat de Lleida","ror":"https://ror.org/050c3cw24","country_code":"ES","type":"education","lineage":["https://openalex.org/I15766328"]},{"id":"https://openalex.org/I170486558","display_name":"Pompeu Fabra University","ror":"https://ror.org/04n0g0b29","country_code":"ES","type":"education","lineage":["https://openalex.org/I170486558"]}],"countries":["ES"],"is_corresponding":false,"raw_author_name":"Fernando Guirado","raw_affiliation_strings":["1 Centre For Genomic Regulation (Pompeu Fabra University), Carrer del Doctor Aiguader 88, 08003 Barcelona, 2Department of Computer Science and Industrial Engineering, University of Lleida, Campus de Cappont, C. de Jaume II 69, E-25001 Lleida and 3Department of Computer Architecture and Operating Systems, Universitad Autonoma de Barcelona, Campus UAB, Edifici Q, 08193 Bellaterra (Barcelona), Spain"],"affiliations":[{"raw_affiliation_string":"1 Centre For Genomic Regulation (Pompeu Fabra University), Carrer del Doctor Aiguader 88, 08003 Barcelona, 2Department of Computer Science and Industrial Engineering, University of Lleida, Campus de Cappont, C. de Jaume II 69, E-25001 Lleida and 3Department of Computer Architecture and Operating Systems, Universitad Autonoma de Barcelona, Campus UAB, Edifici Q, 08193 Bellaterra (Barcelona), Spain","institution_ids":["https://openalex.org/I170486558","https://openalex.org/I15766328"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5033512444","display_name":"Fernado Cores","orcid":null},"institutions":[{"id":"https://openalex.org/I15766328","display_name":"Universitat de Lleida","ror":"https://ror.org/050c3cw24","country_code":"ES","type":"education","lineage":["https://openalex.org/I15766328"]},{"id":"https://openalex.org/I170486558","display_name":"Pompeu Fabra University","ror":"https://ror.org/04n0g0b29","country_code":"ES","type":"education","lineage":["https://openalex.org/I170486558"]}],"countries":["ES"],"is_corresponding":false,"raw_author_name":"Fernado Cores","raw_affiliation_strings":["1 Centre For Genomic Regulation (Pompeu Fabra University), Carrer del Doctor Aiguader 88, 08003 Barcelona, 2Department of Computer Science and Industrial Engineering, University of Lleida, Campus de Cappont, C. de Jaume II 69, E-25001 Lleida and 3Department of Computer Architecture and Operating Systems, Universitad Autonoma de Barcelona, Campus UAB, Edifici Q, 08193 Bellaterra (Barcelona), Spain"],"affiliations":[{"raw_affiliation_string":"1 Centre For Genomic Regulation (Pompeu Fabra University), Carrer del Doctor Aiguader 88, 08003 Barcelona, 2Department of Computer Science and Industrial Engineering, University of Lleida, Campus de Cappont, C. de Jaume II 69, E-25001 Lleida and 3Department of Computer Architecture and Operating Systems, Universitad Autonoma de Barcelona, Campus UAB, Edifici Q, 08193 Bellaterra (Barcelona), Spain","institution_ids":["https://openalex.org/I170486558","https://openalex.org/I15766328"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5031177539","display_name":"Antonio Espinosa","orcid":"https://orcid.org/0000-0002-6460-3789"},"institutions":[{"id":"https://openalex.org/I15766328","display_name":"Universitat de Lleida","ror":"https://ror.org/050c3cw24","country_code":"ES","type":"education","lineage":["https://openalex.org/I15766328"]},{"id":"https://openalex.org/I170486558","display_name":"Pompeu Fabra University","ror":"https://ror.org/04n0g0b29","country_code":"ES","type":"education","lineage":["https://openalex.org/I170486558"]}],"countries":["ES"],"is_corresponding":false,"raw_author_name":"Toni Espinosa","raw_affiliation_strings":["1 Centre For Genomic Regulation (Pompeu Fabra University), Carrer del Doctor Aiguader 88, 08003 Barcelona, 2Department of Computer Science and Industrial Engineering, University of Lleida, Campus de Cappont, C. de Jaume II 69, E-25001 Lleida and 3Department of Computer Architecture and Operating Systems, Universitad Autonoma de Barcelona, Campus UAB, Edifici Q, 08193 Bellaterra (Barcelona), Spain"],"affiliations":[{"raw_affiliation_string":"1 Centre For Genomic Regulation (Pompeu Fabra University), Carrer del Doctor Aiguader 88, 08003 Barcelona, 2Department of Computer Science and Industrial Engineering, University of Lleida, Campus de Cappont, C. de Jaume II 69, E-25001 Lleida and 3Department of Computer Architecture and Operating Systems, Universitad Autonoma de Barcelona, Campus UAB, Edifici Q, 08193 Bellaterra (Barcelona), Spain","institution_ids":["https://openalex.org/I170486558","https://openalex.org/I15766328"]}]},{"author_position":"last","author":{"id":"https://openalex.org/A5058332830","display_name":"C\u00e9dric Notredame","orcid":"https://orcid.org/0000-0003-1461-0988"},"institutions":[{"id":"https://openalex.org/I15766328","display_name":"Universitat de Lleida","ror":"https://ror.org/050c3cw24","country_code":"ES","type":"education","lineage":["https://openalex.org/I15766328"]},{"id":"https://openalex.org/I170486558","display_name":"Pompeu Fabra University","ror":"https://ror.org/04n0g0b29","country_code":"ES","type":"education","lineage":["https://openalex.org/I170486558"]}],"countries":["ES"],"is_corresponding":true,"raw_author_name":"Cedric Notredame","raw_affiliation_strings":["1 Centre For Genomic Regulation (Pompeu Fabra University), Carrer del Doctor Aiguader 88, 08003 Barcelona, 2Department of Computer Science and Industrial Engineering, University of Lleida, Campus de Cappont, C. de Jaume II 69, E-25001 Lleida and 3Department of Computer Architecture and Operating Systems, Universitad Autonoma de Barcelona, Campus UAB, Edifici Q, 08193 Bellaterra (Barcelona), Spain"],"affiliations":[{"raw_affiliation_string":"1 Centre For Genomic Regulation (Pompeu Fabra University), Carrer del Doctor Aiguader 88, 08003 Barcelona, 2Department of Computer Science and Industrial Engineering, University of Lleida, Campus de Cappont, C. de Jaume II 69, E-25001 Lleida and 3Department of Computer Architecture and Operating Systems, Universitad Autonoma de Barcelona, Campus UAB, Edifici Q, 08193 Bellaterra (Barcelona), Spain","institution_ids":["https://openalex.org/I170486558","https://openalex.org/I15766328"]}]}],"institutions":[],"countries_distinct_count":1,"institutions_distinct_count":6,"corresponding_author_ids":["https://openalex.org/A5058332830"],"corresponding_institution_ids":["https://openalex.org/I15766328","https://openalex.org/I170486558"],"apc_list":{"value":3618,"currency":"USD","value_usd":3618},"apc_paid":{"value":3618,"currency":"USD","value_usd":3618},"fwci":6.0542,"has_fulltext":true,"cited_by_count":36,"citation_normalized_percentile":{"value":0.96780465,"is_in_top_1_percent":false,"is_in_top_10_percent":true},"cited_by_percentile_year":{"min":90,"max":99},"biblio":{"volume":"26","issue":"15","first_page":"1903","last_page":"1904"},"is_retracted":false,"is_paratext":false,"is_xpac":false,"primary_topic":{"id":"https://openalex.org/T11181","display_name":"Advanced Data Storage Technologies","score":0.9944999814033508,"subfield":{"id":"https://openalex.org/subfields/1705","display_name":"Computer Networks and Communications"},"field":{"id":"https://openalex.org/fields/17","display_name":"Computer Science"},"domain":{"id":"https://openalex.org/domains/3","display_name":"Physical Sciences"}},"topics":[{"id":"https://openalex.org/T11181","display_name":"Advanced Data Storage Technologies","score":0.9944999814033508,"subfield":{"id":"https://openalex.org/subfields/1705","display_name":"Computer Networks and Communications"},"field":{"id":"https://openalex.org/fields/17","display_name":"Computer Science"},"domain":{"id":"https://openalex.org/domains/3","display_name":"Physical Sciences"}},{"id":"https://openalex.org/T11269","display_name":"Algorithms and Data Compression","score":0.9886999726295471,"subfield":{"id":"https://openalex.org/subfields/1702","display_name":"Artificial Intelligence"},"field":{"id":"https://openalex.org/fields/17","display_name":"Computer Science"},"domain":{"id":"https://openalex.org/domains/3","display_name":"Physical Sciences"}},{"id":"https://openalex.org/T11986","display_name":"Scientific Computing and Data Management","score":0.986299991607666,"subfield":{"id":"https://openalex.org/subfields/1802","display_name":"Information Systems and Management"},"field":{"id":"https://openalex.org/fields/18","display_name":"Decision Sciences"},"domain":{"id":"https://openalex.org/domains/2","display_name":"Social Sciences"}}],"keywords":[{"id":"https://openalex.org/keywords/benchmarking","display_name":"Benchmarking","score":0.8717425465583801},{"id":"https://openalex.org/keywords/cloud-computing","display_name":"Cloud computing","score":0.8467140197753906},{"id":"https://openalex.org/keywords/benchmark","display_name":"Benchmark (surveying)","score":0.8239288330078125},{"id":"https://openalex.org/keywords/amazon-rainforest","display_name":"Amazon rainforest","score":0.7927484512329102},{"id":"https://openalex.org/keywords/computer-science","display_name":"Computer science","score":0.774782121181488},{"id":"https://openalex.org/keywords/consistency","display_name":"Consistency (knowledge bases)","score":0.693320631980896},{"id":"https://openalex.org/keywords/parallel-computing","display_name":"Parallel computing","score":0.5193380117416382},{"id":"https://openalex.org/keywords/software-deployment","display_name":"Software deployment","score":0.5004611015319824},{"id":"https://openalex.org/keywords/open-source","display_name":"Open source","score":0.4740426540374756},{"id":"https://openalex.org/keywords/r-package","display_name":"R package","score":0.4486793875694275},{"id":"https://openalex.org/keywords/operating-system","display_name":"Operating system","score":0.4213985800743103},{"id":"https://openalex.org/keywords/algorithm","display_name":"Algorithm","score":0.3776787519454956},{"id":"https://openalex.org/keywords/database","display_name":"Database","score":0.3675466775894165},{"id":"https://openalex.org/keywords/distributed-computing","display_name":"Distributed computing","score":0.3571617007255554},{"id":"https://openalex.org/keywords/computational-science","display_name":"Computational science","score":0.2726724445819855},{"id":"https://openalex.org/keywords/software","display_name":"Software","score":0.18821203708648682},{"id":"https://openalex.org/keywords/artificial-intelligence","display_name":"Artificial intelligence","score":0.1600472331047058},{"id":"https://openalex.org/keywords/biology","display_name":"Biology","score":0.09118574857711792}],"concepts":[{"id":"https://openalex.org/C86251818","wikidata":"https://www.wikidata.org/wiki/Q816754","display_name":"Benchmarking","level":2,"score":0.8717425465583801},{"id":"https://openalex.org/C79974875","wikidata":"https://www.wikidata.org/wiki/Q483639","display_name":"Cloud computing","level":2,"score":0.8467140197753906},{"id":"https://openalex.org/C185798385","wikidata":"https://www.wikidata.org/wiki/Q1161707","display_name":"Benchmark (surveying)","level":2,"score":0.8239288330078125},{"id":"https://openalex.org/C535291247","wikidata":"https://www.wikidata.org/wiki/Q177567","display_name":"Amazon rainforest","level":2,"score":0.7927484512329102},{"id":"https://openalex.org/C41008148","wikidata":"https://www.wikidata.org/wiki/Q21198","display_name":"Computer science","level":0,"score":0.774782121181488},{"id":"https://openalex.org/C2776436953","wikidata":"https://www.wikidata.org/wiki/Q5163215","display_name":"Consistency (knowledge bases)","level":2,"score":0.693320631980896},{"id":"https://openalex.org/C173608175","wikidata":"https://www.wikidata.org/wiki/Q232661","display_name":"Parallel computing","level":1,"score":0.5193380117416382},{"id":"https://openalex.org/C105339364","wikidata":"https://www.wikidata.org/wiki/Q2297740","display_name":"Software deployment","level":2,"score":0.5004611015319824},{"id":"https://openalex.org/C3018397939","wikidata":"https://www.wikidata.org/wiki/Q3644502","display_name":"Open source","level":3,"score":0.4740426540374756},{"id":"https://openalex.org/C2984074130","wikidata":"https://www.wikidata.org/wiki/Q73539779","display_name":"R package","level":2,"score":0.4486793875694275},{"id":"https://openalex.org/C111919701","wikidata":"https://www.wikidata.org/wiki/Q9135","display_name":"Operating system","level":1,"score":0.4213985800743103},{"id":"https://openalex.org/C11413529","wikidata":"https://www.wikidata.org/wiki/Q8366","display_name":"Algorithm","level":1,"score":0.3776787519454956},{"id":"https://openalex.org/C77088390","wikidata":"https://www.wikidata.org/wiki/Q8513","display_name":"Database","level":1,"score":0.3675466775894165},{"id":"https://openalex.org/C120314980","wikidata":"https://www.wikidata.org/wiki/Q180634","display_name":"Distributed computing","level":1,"score":0.3571617007255554},{"id":"https://openalex.org/C459310","wikidata":"https://www.wikidata.org/wiki/Q117801","display_name":"Computational science","level":1,"score":0.2726724445819855},{"id":"https://openalex.org/C2777904410","wikidata":"https://www.wikidata.org/wiki/Q7397","display_name":"Software","level":2,"score":0.18821203708648682},{"id":"https://openalex.org/C154945302","wikidata":"https://www.wikidata.org/wiki/Q11660","display_name":"Artificial intelligence","level":1,"score":0.1600472331047058},{"id":"https://openalex.org/C86803240","wikidata":"https://www.wikidata.org/wiki/Q420","display_name":"Biology","level":0,"score":0.09118574857711792},{"id":"https://openalex.org/C205649164","wikidata":"https://www.wikidata.org/wiki/Q1071","display_name":"Geography","level":0,"score":0.0},{"id":"https://openalex.org/C144133560","wikidata":"https://www.wikidata.org/wiki/Q4830453","display_name":"Business","level":0,"score":0.0},{"id":"https://openalex.org/C13280743","wikidata":"https://www.wikidata.org/wiki/Q131089","display_name":"Geodesy","level":1,"score":0.0},{"id":"https://openalex.org/C18903297","wikidata":"https://www.wikidata.org/wiki/Q7150","display_name":"Ecology","level":1,"score":0.0},{"id":"https://openalex.org/C162853370","wikidata":"https://www.wikidata.org/wiki/Q39809","display_name":"Marketing","level":1,"score":0.0}],"mesh":[{"descriptor_ui":"D000465","descriptor_name":"Algorithms","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D000465","descriptor_name":"Algorithms","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D000465","descriptor_name":"Algorithms","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D012984","descriptor_name":"Software","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D012984","descriptor_name":"Software","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D012984","descriptor_name":"Software","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D016415","descriptor_name":"Sequence Alignment","qualifier_ui":"Q000379","qualifier_name":"methods","is_major_topic":false},{"descriptor_ui":"D016415","descriptor_name":"Sequence Alignment","qualifier_ui":"Q000379","qualifier_name":"methods","is_major_topic":false},{"descriptor_ui":"D016415","descriptor_name":"Sequence Alignment","qualifier_ui":"Q000379","qualifier_name":"methods","is_major_topic":false},{"descriptor_ui":"D020407","descriptor_name":"Internet","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D020407","descriptor_name":"Internet","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D020407","descriptor_name":"Internet","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false}],"locations_count":6,"locations":[{"id":"doi:10.1093/bioinformatics/btq304","is_oa":true,"landing_page_url":"https://doi.org/10.1093/bioinformatics/btq304","pdf_url":"https://academic.oup.com/bioinformatics/article-pdf/26/15/1903/467181/btq304.pdf","source":{"id":"https://openalex.org/S52395412","display_name":"Bioinformatics","issn_l":"1367-4803","issn":["1367-4803","1367-4811"],"is_oa":false,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310311648","host_organization_name":"Oxford University Press","host_organization_lineage":["https://openalex.org/P4310311648","https://openalex.org/P4310311647"],"host_organization_lineage_names":["Oxford University Press","University of Oxford"],"type":"journal"},"license":"cc-by-nc","license_id":"https://openalex.org/licenses/cc-by-nc","version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Bioinformatics","raw_type":"journal-article"},{"id":"pmid:20605929","is_oa":false,"landing_page_url":"https://pubmed.ncbi.nlm.nih.gov/20605929","pdf_url":null,"source":{"id":"https://openalex.org/S4306525036","display_name":"PubMed","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I1299303238","host_organization_name":"National Institutes of Health","host_organization_lineage":["https://openalex.org/I1299303238"],"host_organization_lineage_names":[],"type":"repository"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Bioinformatics (Oxford, England)","raw_type":null},{"id":"pmh:oai:dnet:raudl_______::358395369ec51d23b2b43371b4598c48","is_oa":true,"landing_page_url":"http://hdl.handle.net/10459.1/56659","pdf_url":null,"source":{"id":"https://openalex.org/S4306402641","display_name":"LA Referencia (Red Federada de Repositorios Institucionales de Publicaciones Cient\u00edficas)","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I4383465926","host_organization_name":"LA Referencia","host_organization_lineage":["https://openalex.org/I4383465926"],"host_organization_lineage_names":[],"type":"repository"},"license":"cc-by-nc","license_id":"https://openalex.org/licenses/cc-by-nc","version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"","raw_type":"info:eu-repo/semantics/article"},{"id":"pmh:oai:ddd.uab.cat:288055","is_oa":true,"landing_page_url":"https://ddd.uab.cat/record/288055","pdf_url":null,"source":{"id":"https://openalex.org/S4306400380","display_name":"Dip\u00f2sit Digital de Documents de la UAB (Universitat Aut\u00f2noma de Barcelona)","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I123044942","host_organization_name":"Universitat Aut\u00f2noma de Barcelona","host_organization_lineage":["https://openalex.org/I123044942"],"host_organization_lineage_names":[],"type":"repository"},"license":"cc-by-nc","license_id":"https://openalex.org/licenses/cc-by-nc","version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":"","raw_type":"Article"},{"id":"pmh:oai:europepmc.org:1956152","is_oa":false,"landing_page_url":"https://www.ncbi.nlm.nih.gov/pmc/articles/2905555","pdf_url":null,"source":{"id":"https://openalex.org/S4306400806","display_name":"Europe PMC (PubMed Central)","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I1303153112","host_organization_name":"European Bioinformatics Institute","host_organization_lineage":["https://openalex.org/I1303153112"],"host_organization_lineage_names":[],"type":"repository"},"license":null,"license_id":null,"version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":null,"raw_type":"Text"},{"id":"pmh:oai:pubmedcentral.nih.gov:2905555","is_oa":true,"landing_page_url":"http://doi.org/10.1093/bioinformatics/btq304","pdf_url":null,"source":{"id":"https://openalex.org/S2764455111","display_name":"PubMed Central","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I1299303238","host_organization_name":"National Institutes of Health","host_organization_lineage":["https://openalex.org/I1299303238"],"host_organization_lineage_names":[],"type":"repository"},"license":null,"license_id":null,"version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":"Bioinformatics","raw_type":"Text"}],"best_oa_location":{"id":"doi:10.1093/bioinformatics/btq304","is_oa":true,"landing_page_url":"https://doi.org/10.1093/bioinformatics/btq304","pdf_url":"https://academic.oup.com/bioinformatics/article-pdf/26/15/1903/467181/btq304.pdf","source":{"id":"https://openalex.org/S52395412","display_name":"Bioinformatics","issn_l":"1367-4803","issn":["1367-4803","1367-4811"],"is_oa":false,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310311648","host_organization_name":"Oxford University Press","host_organization_lineage":["https://openalex.org/P4310311648","https://openalex.org/P4310311647"],"host_organization_lineage_names":["Oxford University Press","University of Oxford"],"type":"journal"},"license":"cc-by-nc","license_id":"https://openalex.org/licenses/cc-by-nc","version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Bioinformatics","raw_type":"journal-article"},"sustainable_development_goals":[],"awards":[],"funders":[],"has_content":{"grobid_xml":true,"pdf":true},"content_urls":{"pdf":"https://content.openalex.org/works/W2168614088.pdf","grobid_xml":"https://content.openalex.org/works/W2168614088.grobid-xml"},"referenced_works_count":11,"referenced_works":["https://openalex.org/W2001134403","https://openalex.org/W2006290495","https://openalex.org/W2033339460","https://openalex.org/W2074231493","https://openalex.org/W2127122014","https://openalex.org/W2136570298","https://openalex.org/W2140872496","https://openalex.org/W2141670298","https://openalex.org/W2151904894","https://openalex.org/W2152688507","https://openalex.org/W3150974748"],"related_works":["https://openalex.org/W2988020227","https://openalex.org/W2928366838","https://openalex.org/W2968530416","https://openalex.org/W2247439442","https://openalex.org/W2751540061","https://openalex.org/W2796889653","https://openalex.org/W4362015227","https://openalex.org/W2053736319","https://openalex.org/W2952526240","https://openalex.org/W2168614088"],"abstract_inverted_index":{"T-Coffee":[0],"is":[1],"a":[2],"freeware":[3],"open":[4],"source":[5],"package":[6],"available":[7],"from":[8],"http://www.tcoffee.org/homepage.html":[9]},"counts_by_year":[{"year":2022,"cited_by_count":2},{"year":2020,"cited_by_count":2},{"year":2019,"cited_by_count":2},{"year":2018,"cited_by_count":1},{"year":2017,"cited_by_count":1},{"year":2016,"cited_by_count":2},{"year":2015,"cited_by_count":3},{"year":2014,"cited_by_count":6},{"year":2013,"cited_by_count":4},{"year":2012,"cited_by_count":6}],"updated_date":"2025-11-06T03:46:38.306776","created_date":"2025-10-10T00:00:00"}
