{"id":"https://openalex.org/W2161080683","doi":"https://doi.org/10.1093/bioinformatics/btq301","title":"Cassis: detection of genomic rearrangement breakpoints","display_name":"Cassis: detection of genomic rearrangement breakpoints","publication_year":2010,"publication_date":"2010-06-23","ids":{"openalex":"https://openalex.org/W2161080683","doi":"https://doi.org/10.1093/bioinformatics/btq301","mag":"2161080683","pmid":"https://pubmed.ncbi.nlm.nih.gov/20576622"},"language":"en","primary_location":{"id":"doi:10.1093/bioinformatics/btq301","is_oa":true,"landing_page_url":"https://doi.org/10.1093/bioinformatics/btq301","pdf_url":"https://academic.oup.com/bioinformatics/article-pdf/26/15/1897/48853403/bioinformatics_26_15_1897.pdf","source":{"id":"https://openalex.org/S52395412","display_name":"Bioinformatics","issn_l":"1367-4803","issn":["1367-4803","1367-4811"],"is_oa":false,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310311648","host_organization_name":"Oxford University Press","host_organization_lineage":["https://openalex.org/P4310311648","https://openalex.org/P4310311647"],"host_organization_lineage_names":["Oxford University Press","University of Oxford"],"type":"journal"},"license":"cc-by-nc","license_id":"https://openalex.org/licenses/cc-by-nc","version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Bioinformatics","raw_type":"journal-article"},"type":"article","indexed_in":["crossref","doaj","pubmed"],"open_access":{"is_oa":true,"oa_status":"hybrid","oa_url":"https://academic.oup.com/bioinformatics/article-pdf/26/15/1897/48853403/bioinformatics_26_15_1897.pdf","any_repository_has_fulltext":true},"authorships":[{"author_position":"first","author":{"id":"https://openalex.org/A5047766466","display_name":"Christian Baudet","orcid":"https://orcid.org/0000-0002-9187-6512"},"institutions":[{"id":"https://openalex.org/I4210135640","display_name":"Laboratoire de Biom\u00e9trie et Biologie Evolutive","ror":"https://ror.org/03skt0t88","country_code":"FR","type":"facility","lineage":["https://openalex.org/I100532134","https://openalex.org/I1294671590","https://openalex.org/I1294671590","https://openalex.org/I1326498283","https://openalex.org/I203339264","https://openalex.org/I4210100596","https://openalex.org/I4210107625","https://openalex.org/I4210135640"]},{"id":"https://openalex.org/I1294671590","display_name":"Centre National de la Recherche Scientifique","ror":"https://ror.org/02feahw73","country_code":"FR","type":"funder","lineage":["https://openalex.org/I1294671590"]},{"id":"https://openalex.org/I181391015","display_name":"Universidade Estadual de Campinas (UNICAMP)","ror":"https://ror.org/04wffgt70","country_code":"BR","type":"education","lineage":["https://openalex.org/I181391015"]},{"id":"https://openalex.org/I1326498283","display_name":"Institut national de recherche en informatique et en automatique","ror":"https://ror.org/02kvxyf05","country_code":"FR","type":"funder","lineage":["https://openalex.org/I1326498283"]},{"id":"https://openalex.org/I15057530","display_name":"Universit\u00e9 de Bordeaux","ror":"https://ror.org/057qpr032","country_code":"FR","type":"education","lineage":["https://openalex.org/I15057530"]},{"id":"https://openalex.org/I100532134","display_name":"Universit\u00e9 Claude Bernard Lyon 1","ror":"https://ror.org/029brtt94","country_code":"FR","type":"education","lineage":["https://openalex.org/I100532134","https://openalex.org/I203339264"]}],"countries":["BR","FR"],"is_corresponding":true,"raw_author_name":"Christian Baudet","raw_affiliation_strings":["1 Equipe BAMBOO, INRIA Grenoble Rh\u00f4ne-Alpes et Laboratoire de Biom\u00e9trie et Biologie \u00c9volutive (UMR 5558) CNRS, Universit\u00e9 Lyon 1, F-69100 Villeurbanne, France, 2Institute of Computing, University of Campinas (Unicamp), Av. Albert Einstein, 1251 - Cidade Universit\u00e1ria, Caixa Postal 6176 \u2013 CEP 13083-970, Campinas \u2013 S\u00e3o Paulo, Brazil and 3Universit\u00e9 de Bordeaux, Centre de Bioinformatique \u2013 G\u00e9nomique Fonctionnelle Bordeaux, F-33000 Bordeaux, France","An algorithmic view on genomes, cells, and environments"],"affiliations":[{"raw_affiliation_string":"1 Equipe BAMBOO, INRIA Grenoble Rh\u00f4ne-Alpes et Laboratoire de Biom\u00e9trie et Biologie \u00c9volutive (UMR 5558) CNRS, Universit\u00e9 Lyon 1, F-69100 Villeurbanne, France, 2Institute of Computing, University of Campinas (Unicamp), Av. Albert Einstein, 1251 - Cidade Universit\u00e1ria, Caixa Postal 6176 \u2013 CEP 13083-970, Campinas \u2013 S\u00e3o Paulo, Brazil and 3Universit\u00e9 de Bordeaux, Centre de Bioinformatique \u2013 G\u00e9nomique Fonctionnelle Bordeaux, F-33000 Bordeaux, France","institution_ids":["https://openalex.org/I100532134","https://openalex.org/I1294671590","https://openalex.org/I181391015","https://openalex.org/I1326498283","https://openalex.org/I4210135640","https://openalex.org/I15057530"]},{"raw_affiliation_string":"An algorithmic view on genomes, cells, and environments","institution_ids":[]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5087524785","display_name":"Claire Lemaitre","orcid":"https://orcid.org/0000-0001-8675-170X"},"institutions":[{"id":"https://openalex.org/I1294671590","display_name":"Centre National de la Recherche Scientifique","ror":"https://ror.org/02feahw73","country_code":"FR","type":"funder","lineage":["https://openalex.org/I1294671590"]},{"id":"https://openalex.org/I181391015","display_name":"Universidade Estadual de Campinas (UNICAMP)","ror":"https://ror.org/04wffgt70","country_code":"BR","type":"education","lineage":["https://openalex.org/I181391015"]},{"id":"https://openalex.org/I15057530","display_name":"Universit\u00e9 de Bordeaux","ror":"https://ror.org/057qpr032","country_code":"FR","type":"education","lineage":["https://openalex.org/I15057530"]},{"id":"https://openalex.org/I4210135640","display_name":"Laboratoire de Biom\u00e9trie et Biologie Evolutive","ror":"https://ror.org/03skt0t88","country_code":"FR","type":"facility","lineage":["https://openalex.org/I100532134","https://openalex.org/I1294671590","https://openalex.org/I1294671590","https://openalex.org/I1326498283","https://openalex.org/I203339264","https://openalex.org/I4210100596","https://openalex.org/I4210107625","https://openalex.org/I4210135640"]},{"id":"https://openalex.org/I4210118410","display_name":"Institut th\u00e9matique G\u00e9n\u00e9tique, g\u00e9nomique et bioinformatique","ror":"https://ror.org/01rfstj90","country_code":"FR","type":"government","lineage":["https://openalex.org/I154526488","https://openalex.org/I4210118410"]},{"id":"https://openalex.org/I100532134","display_name":"Universit\u00e9 Claude Bernard Lyon 1","ror":"https://ror.org/029brtt94","country_code":"FR","type":"education","lineage":["https://openalex.org/I100532134","https://openalex.org/I203339264"]},{"id":"https://openalex.org/I1326498283","display_name":"Institut national de recherche en informatique et en automatique","ror":"https://ror.org/02kvxyf05","country_code":"FR","type":"funder","lineage":["https://openalex.org/I1326498283"]}],"countries":["BR","FR"],"is_corresponding":false,"raw_author_name":"Claire Lemaitre","raw_affiliation_strings":["1 Equipe BAMBOO, INRIA Grenoble Rh\u00f4ne-Alpes et Laboratoire de Biom\u00e9trie et Biologie \u00c9volutive (UMR 5558) CNRS, Universit\u00e9 Lyon 1, F-69100 Villeurbanne, France, 2Institute of Computing, University of Campinas (Unicamp), Av. Albert Einstein, 1251 - Cidade Universit\u00e1ria, Caixa Postal 6176 \u2013 CEP 13083-970, Campinas \u2013 S\u00e3o Paulo, Brazil and 3Universit\u00e9 de Bordeaux, Centre de Bioinformatique \u2013 G\u00e9nomique Fonctionnelle Bordeaux, F-33000 Bordeaux, France","Biological systems and models, bioinformatics and sequences"],"affiliations":[{"raw_affiliation_string":"1 Equipe BAMBOO, INRIA Grenoble Rh\u00f4ne-Alpes et Laboratoire de Biom\u00e9trie et Biologie \u00c9volutive (UMR 5558) CNRS, Universit\u00e9 Lyon 1, F-69100 Villeurbanne, France, 2Institute of Computing, University of Campinas (Unicamp), Av. Albert Einstein, 1251 - Cidade Universit\u00e1ria, Caixa Postal 6176 \u2013 CEP 13083-970, Campinas \u2013 S\u00e3o Paulo, Brazil and 3Universit\u00e9 de Bordeaux, Centre de Bioinformatique \u2013 G\u00e9nomique Fonctionnelle Bordeaux, F-33000 Bordeaux, France","institution_ids":["https://openalex.org/I100532134","https://openalex.org/I1294671590","https://openalex.org/I181391015","https://openalex.org/I1326498283","https://openalex.org/I4210135640","https://openalex.org/I15057530"]},{"raw_affiliation_string":"Biological systems and models, bioinformatics and sequences","institution_ids":["https://openalex.org/I4210118410"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5042140271","display_name":"Zanoni Dias","orcid":"https://orcid.org/0000-0003-3333-6822"},"institutions":[{"id":"https://openalex.org/I1294671590","display_name":"Centre National de la Recherche Scientifique","ror":"https://ror.org/02feahw73","country_code":"FR","type":"funder","lineage":["https://openalex.org/I1294671590"]},{"id":"https://openalex.org/I15057530","display_name":"Universit\u00e9 de Bordeaux","ror":"https://ror.org/057qpr032","country_code":"FR","type":"education","lineage":["https://openalex.org/I15057530"]},{"id":"https://openalex.org/I4210135640","display_name":"Laboratoire de Biom\u00e9trie et Biologie Evolutive","ror":"https://ror.org/03skt0t88","country_code":"FR","type":"facility","lineage":["https://openalex.org/I100532134","https://openalex.org/I1294671590","https://openalex.org/I1294671590","https://openalex.org/I1326498283","https://openalex.org/I203339264","https://openalex.org/I4210100596","https://openalex.org/I4210107625","https://openalex.org/I4210135640"]},{"id":"https://openalex.org/I181391015","display_name":"Universidade Estadual de Campinas (UNICAMP)","ror":"https://ror.org/04wffgt70","country_code":"BR","type":"education","lineage":["https://openalex.org/I181391015"]},{"id":"https://openalex.org/I100532134","display_name":"Universit\u00e9 Claude Bernard Lyon 1","ror":"https://ror.org/029brtt94","country_code":"FR","type":"education","lineage":["https://openalex.org/I100532134","https://openalex.org/I203339264"]},{"id":"https://openalex.org/I1326498283","display_name":"Institut national de recherche en informatique et en automatique","ror":"https://ror.org/02kvxyf05","country_code":"FR","type":"funder","lineage":["https://openalex.org/I1326498283"]}],"countries":["BR","FR"],"is_corresponding":false,"raw_author_name":"Zanoni Dias","raw_affiliation_strings":["1 Equipe BAMBOO, INRIA Grenoble Rh\u00f4ne-Alpes et Laboratoire de Biom\u00e9trie et Biologie \u00c9volutive (UMR 5558) CNRS, Universit\u00e9 Lyon 1, F-69100 Villeurbanne, France, 2Institute of Computing, University of Campinas (Unicamp), Av. Albert Einstein, 1251 - Cidade Universit\u00e1ria, Caixa Postal 6176 \u2013 CEP 13083-970, Campinas \u2013 S\u00e3o Paulo, Brazil and 3Universit\u00e9 de Bordeaux, Centre de Bioinformatique \u2013 G\u00e9nomique Fonctionnelle Bordeaux, F-33000 Bordeaux, France"],"affiliations":[{"raw_affiliation_string":"1 Equipe BAMBOO, INRIA Grenoble Rh\u00f4ne-Alpes et Laboratoire de Biom\u00e9trie et Biologie \u00c9volutive (UMR 5558) CNRS, Universit\u00e9 Lyon 1, F-69100 Villeurbanne, France, 2Institute of Computing, University of Campinas (Unicamp), Av. Albert Einstein, 1251 - Cidade Universit\u00e1ria, Caixa Postal 6176 \u2013 CEP 13083-970, Campinas \u2013 S\u00e3o Paulo, Brazil and 3Universit\u00e9 de Bordeaux, Centre de Bioinformatique \u2013 G\u00e9nomique Fonctionnelle Bordeaux, F-33000 Bordeaux, France","institution_ids":["https://openalex.org/I100532134","https://openalex.org/I1294671590","https://openalex.org/I181391015","https://openalex.org/I1326498283","https://openalex.org/I4210135640","https://openalex.org/I15057530"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5106420208","display_name":"Christian Gautier","orcid":null},"institutions":[{"id":"https://openalex.org/I15057530","display_name":"Universit\u00e9 de Bordeaux","ror":"https://ror.org/057qpr032","country_code":"FR","type":"education","lineage":["https://openalex.org/I15057530"]},{"id":"https://openalex.org/I100532134","display_name":"Universit\u00e9 Claude Bernard Lyon 1","ror":"https://ror.org/029brtt94","country_code":"FR","type":"education","lineage":["https://openalex.org/I100532134","https://openalex.org/I203339264"]},{"id":"https://openalex.org/I4210135640","display_name":"Laboratoire de Biom\u00e9trie et Biologie Evolutive","ror":"https://ror.org/03skt0t88","country_code":"FR","type":"facility","lineage":["https://openalex.org/I100532134","https://openalex.org/I1294671590","https://openalex.org/I1294671590","https://openalex.org/I1326498283","https://openalex.org/I203339264","https://openalex.org/I4210100596","https://openalex.org/I4210107625","https://openalex.org/I4210135640"]},{"id":"https://openalex.org/I181391015","display_name":"Universidade Estadual de Campinas (UNICAMP)","ror":"https://ror.org/04wffgt70","country_code":"BR","type":"education","lineage":["https://openalex.org/I181391015"]},{"id":"https://openalex.org/I1326498283","display_name":"Institut national de recherche en informatique et en automatique","ror":"https://ror.org/02kvxyf05","country_code":"FR","type":"funder","lineage":["https://openalex.org/I1326498283"]},{"id":"https://openalex.org/I1294671590","display_name":"Centre National de la Recherche Scientifique","ror":"https://ror.org/02feahw73","country_code":"FR","type":"funder","lineage":["https://openalex.org/I1294671590"]}],"countries":["BR","FR"],"is_corresponding":false,"raw_author_name":"Christian Gautier","raw_affiliation_strings":["1 Equipe BAMBOO, INRIA Grenoble Rh\u00f4ne-Alpes et Laboratoire de Biom\u00e9trie et Biologie \u00c9volutive (UMR 5558) CNRS, Universit\u00e9 Lyon 1, F-69100 Villeurbanne, France, 2Institute of Computing, University of Campinas (Unicamp), Av. Albert Einstein, 1251 - Cidade Universit\u00e1ria, Caixa Postal 6176 \u2013 CEP 13083-970, Campinas \u2013 S\u00e3o Paulo, Brazil and 3Universit\u00e9 de Bordeaux, Centre de Bioinformatique \u2013 G\u00e9nomique Fonctionnelle Bordeaux, F-33000 Bordeaux, France","Baobab"],"affiliations":[{"raw_affiliation_string":"1 Equipe BAMBOO, INRIA Grenoble Rh\u00f4ne-Alpes et Laboratoire de Biom\u00e9trie et Biologie \u00c9volutive (UMR 5558) CNRS, Universit\u00e9 Lyon 1, F-69100 Villeurbanne, France, 2Institute of Computing, University of Campinas (Unicamp), Av. Albert Einstein, 1251 - Cidade Universit\u00e1ria, Caixa Postal 6176 \u2013 CEP 13083-970, Campinas \u2013 S\u00e3o Paulo, Brazil and 3Universit\u00e9 de Bordeaux, Centre de Bioinformatique \u2013 G\u00e9nomique Fonctionnelle Bordeaux, F-33000 Bordeaux, France","institution_ids":["https://openalex.org/I100532134","https://openalex.org/I1294671590","https://openalex.org/I181391015","https://openalex.org/I1326498283","https://openalex.org/I4210135640","https://openalex.org/I15057530"]},{"raw_affiliation_string":"Baobab","institution_ids":[]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5026210731","display_name":"\u00c9ric Tannier","orcid":"https://orcid.org/0000-0002-3681-7536"},"institutions":[{"id":"https://openalex.org/I1326498283","display_name":"Institut national de recherche en informatique et en automatique","ror":"https://ror.org/02kvxyf05","country_code":"FR","type":"funder","lineage":["https://openalex.org/I1326498283"]},{"id":"https://openalex.org/I15057530","display_name":"Universit\u00e9 de Bordeaux","ror":"https://ror.org/057qpr032","country_code":"FR","type":"education","lineage":["https://openalex.org/I15057530"]},{"id":"https://openalex.org/I1294671590","display_name":"Centre National de la Recherche Scientifique","ror":"https://ror.org/02feahw73","country_code":"FR","type":"funder","lineage":["https://openalex.org/I1294671590"]},{"id":"https://openalex.org/I181391015","display_name":"Universidade Estadual de Campinas (UNICAMP)","ror":"https://ror.org/04wffgt70","country_code":"BR","type":"education","lineage":["https://openalex.org/I181391015"]},{"id":"https://openalex.org/I4210135640","display_name":"Laboratoire de Biom\u00e9trie et Biologie Evolutive","ror":"https://ror.org/03skt0t88","country_code":"FR","type":"facility","lineage":["https://openalex.org/I100532134","https://openalex.org/I1294671590","https://openalex.org/I1294671590","https://openalex.org/I1326498283","https://openalex.org/I203339264","https://openalex.org/I4210100596","https://openalex.org/I4210107625","https://openalex.org/I4210135640"]},{"id":"https://openalex.org/I100532134","display_name":"Universit\u00e9 Claude Bernard Lyon 1","ror":"https://ror.org/029brtt94","country_code":"FR","type":"education","lineage":["https://openalex.org/I100532134","https://openalex.org/I203339264"]}],"countries":["BR","FR"],"is_corresponding":false,"raw_author_name":"Eric Tannier","raw_affiliation_strings":["1 Equipe BAMBOO, INRIA Grenoble Rh\u00f4ne-Alpes et Laboratoire de Biom\u00e9trie et Biologie \u00c9volutive (UMR 5558) CNRS, Universit\u00e9 Lyon 1, F-69100 Villeurbanne, France, 2Institute of Computing, University of Campinas (Unicamp), Av. Albert Einstein, 1251 - Cidade Universit\u00e1ria, Caixa Postal 6176 \u2013 CEP 13083-970, Campinas \u2013 S\u00e3o Paulo, Brazil and 3Universit\u00e9 de Bordeaux, Centre de Bioinformatique \u2013 G\u00e9nomique Fonctionnelle Bordeaux, F-33000 Bordeaux, France","Artificial Evolution and Computational Biology"],"affiliations":[{"raw_affiliation_string":"1 Equipe BAMBOO, INRIA Grenoble Rh\u00f4ne-Alpes et Laboratoire de Biom\u00e9trie et Biologie \u00c9volutive (UMR 5558) CNRS, Universit\u00e9 Lyon 1, F-69100 Villeurbanne, France, 2Institute of Computing, University of Campinas (Unicamp), Av. Albert Einstein, 1251 - Cidade Universit\u00e1ria, Caixa Postal 6176 \u2013 CEP 13083-970, Campinas \u2013 S\u00e3o Paulo, Brazil and 3Universit\u00e9 de Bordeaux, Centre de Bioinformatique \u2013 G\u00e9nomique Fonctionnelle Bordeaux, F-33000 Bordeaux, France","institution_ids":["https://openalex.org/I100532134","https://openalex.org/I1294671590","https://openalex.org/I181391015","https://openalex.org/I1326498283","https://openalex.org/I4210135640","https://openalex.org/I15057530"]},{"raw_affiliation_string":"Artificial Evolution and Computational Biology","institution_ids":[]}]},{"author_position":"last","author":{"id":"https://openalex.org/A5110531794","display_name":"Marie-France Sagot","orcid":null},"institutions":[{"id":"https://openalex.org/I15057530","display_name":"Universit\u00e9 de Bordeaux","ror":"https://ror.org/057qpr032","country_code":"FR","type":"education","lineage":["https://openalex.org/I15057530"]},{"id":"https://openalex.org/I100532134","display_name":"Universit\u00e9 Claude Bernard Lyon 1","ror":"https://ror.org/029brtt94","country_code":"FR","type":"education","lineage":["https://openalex.org/I100532134","https://openalex.org/I203339264"]},{"id":"https://openalex.org/I1294671590","display_name":"Centre National de la Recherche Scientifique","ror":"https://ror.org/02feahw73","country_code":"FR","type":"funder","lineage":["https://openalex.org/I1294671590"]},{"id":"https://openalex.org/I1326498283","display_name":"Institut national de recherche en informatique et en automatique","ror":"https://ror.org/02kvxyf05","country_code":"FR","type":"funder","lineage":["https://openalex.org/I1326498283"]},{"id":"https://openalex.org/I4210135640","display_name":"Laboratoire de Biom\u00e9trie et Biologie Evolutive","ror":"https://ror.org/03skt0t88","country_code":"FR","type":"facility","lineage":["https://openalex.org/I100532134","https://openalex.org/I1294671590","https://openalex.org/I1294671590","https://openalex.org/I1326498283","https://openalex.org/I203339264","https://openalex.org/I4210100596","https://openalex.org/I4210107625","https://openalex.org/I4210135640"]},{"id":"https://openalex.org/I181391015","display_name":"Universidade Estadual de Campinas (UNICAMP)","ror":"https://ror.org/04wffgt70","country_code":"BR","type":"education","lineage":["https://openalex.org/I181391015"]}],"countries":["BR","FR"],"is_corresponding":false,"raw_author_name":"Marie-France Sagot","raw_affiliation_strings":["1 Equipe BAMBOO, INRIA Grenoble Rh\u00f4ne-Alpes et Laboratoire de Biom\u00e9trie et Biologie \u00c9volutive (UMR 5558) CNRS, Universit\u00e9 Lyon 1, F-69100 Villeurbanne, France, 2Institute of Computing, University of Campinas (Unicamp), Av. Albert Einstein, 1251 - Cidade Universit\u00e1ria, Caixa Postal 6176 \u2013 CEP 13083-970, Campinas \u2013 S\u00e3o Paulo, Brazil and 3Universit\u00e9 de Bordeaux, Centre de Bioinformatique \u2013 G\u00e9nomique Fonctionnelle Bordeaux, F-33000 Bordeaux, France","An algorithmic view on genomes, cells, and environments"],"affiliations":[{"raw_affiliation_string":"1 Equipe BAMBOO, INRIA Grenoble Rh\u00f4ne-Alpes et Laboratoire de Biom\u00e9trie et Biologie \u00c9volutive (UMR 5558) CNRS, Universit\u00e9 Lyon 1, F-69100 Villeurbanne, France, 2Institute of Computing, University of Campinas (Unicamp), Av. Albert Einstein, 1251 - Cidade Universit\u00e1ria, Caixa Postal 6176 \u2013 CEP 13083-970, Campinas \u2013 S\u00e3o Paulo, Brazil and 3Universit\u00e9 de Bordeaux, Centre de Bioinformatique \u2013 G\u00e9nomique Fonctionnelle Bordeaux, F-33000 Bordeaux, France","institution_ids":["https://openalex.org/I100532134","https://openalex.org/I1294671590","https://openalex.org/I181391015","https://openalex.org/I1326498283","https://openalex.org/I4210135640","https://openalex.org/I15057530"]},{"raw_affiliation_string":"An algorithmic view on genomes, cells, and environments","institution_ids":[]}]}],"institutions":[],"countries_distinct_count":2,"institutions_distinct_count":6,"corresponding_author_ids":["https://openalex.org/A5047766466"],"corresponding_institution_ids":["https://openalex.org/I100532134","https://openalex.org/I1294671590","https://openalex.org/I1326498283","https://openalex.org/I15057530","https://openalex.org/I181391015","https://openalex.org/I4210135640"],"apc_list":{"value":3618,"currency":"USD","value_usd":3618},"apc_paid":{"value":3618,"currency":"USD","value_usd":3618},"fwci":0.6777,"has_fulltext":true,"cited_by_count":26,"citation_normalized_percentile":{"value":0.70117332,"is_in_top_1_percent":false,"is_in_top_10_percent":false},"cited_by_percentile_year":{"min":89,"max":98},"biblio":{"volume":"26","issue":"15","first_page":"1897","last_page":"1898"},"is_retracted":false,"is_paratext":false,"is_xpac":false,"primary_topic":{"id":"https://openalex.org/T10015","display_name":"Genomics and Phylogenetic Studies","score":0.9997000098228455,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},"topics":[{"id":"https://openalex.org/T10015","display_name":"Genomics and Phylogenetic Studies","score":0.9997000098228455,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},{"id":"https://openalex.org/T13664","display_name":"Genome Rearrangement Algorithms","score":0.9990000128746033,"subfield":{"id":"https://openalex.org/subfields/1311","display_name":"Genetics"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},{"id":"https://openalex.org/T10434","display_name":"Chromosomal and Genetic Variations","score":0.9987000226974487,"subfield":{"id":"https://openalex.org/subfields/1110","display_name":"Plant Science"},"field":{"id":"https://openalex.org/fields/11","display_name":"Agricultural and Biological Sciences"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}}],"keywords":[{"id":"https://openalex.org/keywords/breakpoint","display_name":"Breakpoint","score":0.7802574634552002},{"id":"https://openalex.org/keywords/computational-biology","display_name":"Computational biology","score":0.49648982286453247},{"id":"https://openalex.org/keywords/biology","display_name":"Biology","score":0.44469523429870605},{"id":"https://openalex.org/keywords/computer-science","display_name":"Computer science","score":0.4341459274291992},{"id":"https://openalex.org/keywords/genetics","display_name":"Genetics","score":0.2790398597717285},{"id":"https://openalex.org/keywords/gene","display_name":"Gene","score":0.17532947659492493},{"id":"https://openalex.org/keywords/chromosomal-translocation","display_name":"Chromosomal translocation","score":0.11109483242034912}],"concepts":[{"id":"https://openalex.org/C206936463","wikidata":"https://www.wikidata.org/wiki/Q634179","display_name":"Breakpoint","level":4,"score":0.7802574634552002},{"id":"https://openalex.org/C70721500","wikidata":"https://www.wikidata.org/wiki/Q177005","display_name":"Computational biology","level":1,"score":0.49648982286453247},{"id":"https://openalex.org/C86803240","wikidata":"https://www.wikidata.org/wiki/Q420","display_name":"Biology","level":0,"score":0.44469523429870605},{"id":"https://openalex.org/C41008148","wikidata":"https://www.wikidata.org/wiki/Q21198","display_name":"Computer science","level":0,"score":0.4341459274291992},{"id":"https://openalex.org/C54355233","wikidata":"https://www.wikidata.org/wiki/Q7162","display_name":"Genetics","level":1,"score":0.2790398597717285},{"id":"https://openalex.org/C104317684","wikidata":"https://www.wikidata.org/wiki/Q7187","display_name":"Gene","level":2,"score":0.17532947659492493},{"id":"https://openalex.org/C138626823","wikidata":"https://www.wikidata.org/wiki/Q916504","display_name":"Chromosomal translocation","level":3,"score":0.11109483242034912}],"mesh":[{"descriptor_ui":"D000465","descriptor_name":"Algorithms","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D000465","descriptor_name":"Algorithms","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D000465","descriptor_name":"Algorithms","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D002875","descriptor_name":"Chromosomes","qualifier_ui":"Q000235","qualifier_name":"genetics","is_major_topic":false},{"descriptor_ui":"D002875","descriptor_name":"Chromosomes","qualifier_ui":"Q000235","qualifier_name":"genetics","is_major_topic":false},{"descriptor_ui":"D002875","descriptor_name":"Chromosomes","qualifier_ui":"Q000235","qualifier_name":"genetics","is_major_topic":false},{"descriptor_ui":"D011995","descriptor_name":"Recombination, Genetic","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D011995","descriptor_name":"Recombination, Genetic","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D011995","descriptor_name":"Recombination, Genetic","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D012984","descriptor_name":"Software","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D012984","descriptor_name":"Software","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D012984","descriptor_name":"Software","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D016678","descriptor_name":"Genome","qualifier_ui":"Q000235","qualifier_name":"genetics","is_major_topic":false},{"descriptor_ui":"D016678","descriptor_name":"Genome","qualifier_ui":"Q000235","qualifier_name":"genetics","is_major_topic":false},{"descriptor_ui":"D016678","descriptor_name":"Genome","qualifier_ui":"Q000235","qualifier_name":"genetics","is_major_topic":false},{"descriptor_ui":"D019295","descriptor_name":"Computational Biology","qualifier_ui":"Q000379","qualifier_name":"methods","is_major_topic":false},{"descriptor_ui":"D019295","descriptor_name":"Computational Biology","qualifier_ui":"Q000379","qualifier_name":"methods","is_major_topic":false},{"descriptor_ui":"D019295","descriptor_name":"Computational Biology","qualifier_ui":"Q000379","qualifier_name":"methods","is_major_topic":false},{"descriptor_ui":"D026801","descriptor_name":"Synteny","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D026801","descriptor_name":"Synteny","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D026801","descriptor_name":"Synteny","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D056905","descriptor_name":"Chromosome Breakpoints","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D056905","descriptor_name":"Chromosome Breakpoints","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D056905","descriptor_name":"Chromosome Breakpoints","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true}],"locations_count":5,"locations":[{"id":"doi:10.1093/bioinformatics/btq301","is_oa":true,"landing_page_url":"https://doi.org/10.1093/bioinformatics/btq301","pdf_url":"https://academic.oup.com/bioinformatics/article-pdf/26/15/1897/48853403/bioinformatics_26_15_1897.pdf","source":{"id":"https://openalex.org/S52395412","display_name":"Bioinformatics","issn_l":"1367-4803","issn":["1367-4803","1367-4811"],"is_oa":false,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310311648","host_organization_name":"Oxford University Press","host_organization_lineage":["https://openalex.org/P4310311648","https://openalex.org/P4310311647"],"host_organization_lineage_names":["Oxford University Press","University of Oxford"],"type":"journal"},"license":"cc-by-nc","license_id":"https://openalex.org/licenses/cc-by-nc","version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Bioinformatics","raw_type":"journal-article"},{"id":"pmid:20576622","is_oa":false,"landing_page_url":"https://pubmed.ncbi.nlm.nih.gov/20576622","pdf_url":null,"source":{"id":"https://openalex.org/S4306525036","display_name":"PubMed","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I1299303238","host_organization_name":"National Institutes of Health","host_organization_lineage":["https://openalex.org/I1299303238"],"host_organization_lineage_names":[],"type":"repository"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Bioinformatics (Oxford, England)","raw_type":null},{"id":"pmh:oai:CiteSeerX.psu:10.1.1.947.6246","is_oa":false,"landing_page_url":"http://citeseerx.ist.psu.edu/viewdoc/summary?doi=10.1.1.947.6246","pdf_url":null,"source":null,"license":null,"license_id":null,"version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":"http://bioinformatics.oxfordjournals.org/content/early/2010/06/23/bioinformatics.btq301.full.pdf","raw_type":"text"},{"id":"pmh:oai:HAL:hal-00681095v1","is_oa":false,"landing_page_url":"https://hal.science/hal-00681095","pdf_url":null,"source":{"id":"https://openalex.org/S4306402512","display_name":"HAL (Le Centre pour la Communication Scientifique Directe)","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I1294671590","host_organization_name":"Centre National de la Recherche Scientifique","host_organization_lineage":["https://openalex.org/I1294671590"],"host_organization_lineage_names":[],"type":"repository"},"license":null,"license_id":null,"version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":"Bioinformatics, 2010, 26 (15), pp.1897-8. ⟨10.1093/bioinformatics/btq301⟩","raw_type":"Journal articles"},{"id":"pmh:oai:pubmedcentral.nih.gov:2905553","is_oa":true,"landing_page_url":"https://www.ncbi.nlm.nih.gov/pmc/articles/2905553","pdf_url":null,"source":{"id":"https://openalex.org/S2764455111","display_name":"PubMed Central","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I1299303238","host_organization_name":"National Institutes of Health","host_organization_lineage":["https://openalex.org/I1299303238"],"host_organization_lineage_names":[],"type":"repository"},"license":null,"license_id":null,"version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":"Bioinformatics","raw_type":"Text"}],"best_oa_location":{"id":"doi:10.1093/bioinformatics/btq301","is_oa":true,"landing_page_url":"https://doi.org/10.1093/bioinformatics/btq301","pdf_url":"https://academic.oup.com/bioinformatics/article-pdf/26/15/1897/48853403/bioinformatics_26_15_1897.pdf","source":{"id":"https://openalex.org/S52395412","display_name":"Bioinformatics","issn_l":"1367-4803","issn":["1367-4803","1367-4811"],"is_oa":false,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310311648","host_organization_name":"Oxford University Press","host_organization_lineage":["https://openalex.org/P4310311648","https://openalex.org/P4310311647"],"host_organization_lineage_names":["Oxford University Press","University of Oxford"],"type":"journal"},"license":"cc-by-nc","license_id":"https://openalex.org/licenses/cc-by-nc","version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Bioinformatics","raw_type":"journal-article"},"sustainable_development_goals":[],"awards":[{"id":"https://openalex.org/G237172224","display_name":null,"funder_award_id":"-0 and","funder_id":"https://openalex.org/F4320322025","funder_display_name":"Conselho Nacional de Desenvolvimento Cient\u00edfico e Tecnol\u00f3gico"},{"id":"https://openalex.org/G4379568","display_name":null,"funder_award_id":"472504/2007-0","funder_id":"https://openalex.org/F4320322025","funder_display_name":"Conselho Nacional de Desenvolvimento Cient\u00edfico e Tecnol\u00f3gico"},{"id":"https://openalex.org/G5139334624","display_name":null,"funder_award_id":"Coordena\u00e7\u00e3o","funder_id":"https://openalex.org/F4320321091","funder_display_name":"Coordena\u00e7\u00e3o de Aperfei\u00e7oamento de Pessoal de N\u00edvel Superior"},{"id":"https://openalex.org/G6160365333","display_name":null,"funder_award_id":"Grant","funder_id":"https://openalex.org/F4320321091","funder_display_name":"Coordena\u00e7\u00e3o de Aperfei\u00e7oamento de Pessoal de N\u00edvel Superior"},{"id":"https://openalex.org/G6851345361","display_name":null,"funder_award_id":"Grant","funder_id":"https://openalex.org/F4320320883","funder_display_name":"Agence Nationale de la Recherche"},{"id":"https://openalex.org/G7295187585","display_name":null,"funder_award_id":"Grant","funder_id":"https://openalex.org/F4320322025","funder_display_name":"Conselho Nacional de Desenvolvimento Cient\u00edfico e Tecnol\u00f3gico"},{"id":"https://openalex.org/G963174003","display_name":null,"funder_award_id":"de Aperfei\u00e7","funder_id":"https://openalex.org/F4320321091","funder_display_name":"Coordena\u00e7\u00e3o de Aperfei\u00e7oamento de Pessoal de N\u00edvel Superior"}],"funders":[{"id":"https://openalex.org/F4320320883","display_name":"Agence Nationale de la Recherche","ror":"https://ror.org/00rbzpz17"},{"id":"https://openalex.org/F4320321091","display_name":"Coordena\u00e7\u00e3o de Aperfei\u00e7oamento de Pessoal de N\u00edvel Superior","ror":"https://ror.org/00x0ma614"},{"id":"https://openalex.org/F4320322025","display_name":"Conselho Nacional de Desenvolvimento Cient\u00edfico e Tecnol\u00f3gico","ror":"https://ror.org/03swz6y49"},{"id":"https://openalex.org/F4320334629","display_name":"Biotechnology and Biological Sciences Research Council","ror":"https://ror.org/00cwqg982"}],"has_content":{"pdf":true,"grobid_xml":true},"content_urls":{"pdf":"https://content.openalex.org/works/W2161080683.pdf","grobid_xml":"https://content.openalex.org/works/W2161080683.grobid-xml"},"referenced_works_count":5,"referenced_works":["https://openalex.org/W1786896381","https://openalex.org/W1986009232","https://openalex.org/W1991330646","https://openalex.org/W2096254048","https://openalex.org/W2137780942"],"related_works":["https://openalex.org/W2748952813","https://openalex.org/W2082860237","https://openalex.org/W2119695867","https://openalex.org/W2130076355","https://openalex.org/W1990804418","https://openalex.org/W1993764875","https://openalex.org/W2788277189","https://openalex.org/W2013243191","https://openalex.org/W2151865869","https://openalex.org/W2117258802"],"abstract_inverted_index":{"Perl":[0],"and":[1,18,39,43],"R":[2],"scripts":[3],"are":[4,27],"freely":[5],"available":[6,28],"for":[7],"download":[8,17],"at":[9],"http://pbil.univ-lyon1.fr/software/Cassis/.":[10],"Documentation":[11],"with":[12,30],"methodological":[13],"background,":[14],"technical":[15],"aspects,":[16],"setup":[19],"instructions,":[20],"as":[21,23],"well":[22],"examples":[24],"of":[25],"applications":[26],"together":[29],"the":[31,47],"package.":[32],"The":[33],"package":[34],"was":[35],"tested":[36],"on":[37],"Linux":[38],"Mac":[40],"OS":[41],"environments":[42],"is":[44],"distributed":[45],"under":[46],"GNU":[48],"GPL":[49],"License.":[50]},"counts_by_year":[{"year":2025,"cited_by_count":1},{"year":2024,"cited_by_count":1},{"year":2023,"cited_by_count":1},{"year":2021,"cited_by_count":1},{"year":2020,"cited_by_count":2},{"year":2019,"cited_by_count":3},{"year":2018,"cited_by_count":2},{"year":2016,"cited_by_count":4},{"year":2015,"cited_by_count":2},{"year":2014,"cited_by_count":4},{"year":2012,"cited_by_count":3}],"updated_date":"2026-04-04T16:13:02.066488","created_date":"2025-10-10T00:00:00"}