{"id":"https://openalex.org/W2098754973","doi":"https://doi.org/10.1093/bioinformatics/btq298","title":"MiRror: a combinatorial analysis web tool for ensembles of microRNAs and their targets","display_name":"MiRror: a combinatorial analysis web tool for ensembles of microRNAs and their targets","publication_year":2010,"publication_date":"2010-06-06","ids":{"openalex":"https://openalex.org/W2098754973","doi":"https://doi.org/10.1093/bioinformatics/btq298","mag":"2098754973","pmid":"https://pubmed.ncbi.nlm.nih.gov/20529892"},"language":"en","primary_location":{"id":"doi:10.1093/bioinformatics/btq298","is_oa":false,"landing_page_url":"https://doi.org/10.1093/bioinformatics/btq298","pdf_url":null,"source":{"id":"https://openalex.org/S52395412","display_name":"Bioinformatics","issn_l":"1367-4803","issn":["1367-4803","1367-4811"],"is_oa":false,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310311648","host_organization_name":"Oxford University Press","host_organization_lineage":["https://openalex.org/P4310311648","https://openalex.org/P4310311647"],"host_organization_lineage_names":["Oxford University Press","University of Oxford"],"type":"journal"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Bioinformatics","raw_type":"journal-article"},"type":"article","indexed_in":["crossref","doaj","pubmed"],"open_access":{"is_oa":false,"oa_status":"closed","oa_url":null,"any_repository_has_fulltext":false},"authorships":[{"author_position":"first","author":{"id":"https://openalex.org/A5016849908","display_name":"Yitzhak Friedman","orcid":null},"institutions":[{"id":"https://openalex.org/I197251160","display_name":"Hebrew University of Jerusalem","ror":"https://ror.org/03qxff017","country_code":"IL","type":"education","lineage":["https://openalex.org/I197251160"]}],"countries":["IL"],"is_corresponding":false,"raw_author_name":"Yitzhak Friedman","raw_affiliation_strings":["1 Department of Biological Chemistry, Sudarsky Center for Computational Biology and 2School of Computer Science and Engineering, Hebrew University of Jerusalem, 91904, Israel"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"1 Department of Biological Chemistry, Sudarsky Center for Computational Biology and 2School of Computer Science and Engineering, Hebrew University of Jerusalem, 91904, Israel","institution_ids":["https://openalex.org/I197251160"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5028450191","display_name":"Guy Naamati","orcid":"https://orcid.org/0000-0002-0523-4071"},"institutions":[{"id":"https://openalex.org/I197251160","display_name":"Hebrew University of Jerusalem","ror":"https://ror.org/03qxff017","country_code":"IL","type":"education","lineage":["https://openalex.org/I197251160"]}],"countries":["IL"],"is_corresponding":false,"raw_author_name":"Guy Naamati","raw_affiliation_strings":["1 Department of Biological Chemistry, Sudarsky Center for Computational Biology and 2School of Computer Science and Engineering, Hebrew University of Jerusalem, 91904, Israel"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"1 Department of Biological Chemistry, Sudarsky Center for Computational Biology and 2School of Computer Science and Engineering, Hebrew University of Jerusalem, 91904, Israel","institution_ids":["https://openalex.org/I197251160"]}]},{"author_position":"last","author":{"id":"https://openalex.org/A5085924022","display_name":"Michal Linial","orcid":"https://orcid.org/0000-0002-9357-4526"},"institutions":[{"id":"https://openalex.org/I197251160","display_name":"Hebrew University of Jerusalem","ror":"https://ror.org/03qxff017","country_code":"IL","type":"education","lineage":["https://openalex.org/I197251160"]}],"countries":["IL"],"is_corresponding":true,"raw_author_name":"Michal Linial","raw_affiliation_strings":["1 Department of Biological Chemistry, Sudarsky Center for Computational Biology and 2School of Computer Science and Engineering, Hebrew University of Jerusalem, 91904, Israel"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"1 Department of Biological Chemistry, Sudarsky Center for Computational Biology and 2School of Computer Science and Engineering, Hebrew University of Jerusalem, 91904, Israel","institution_ids":["https://openalex.org/I197251160"]}]}],"institutions":[],"countries_distinct_count":1,"institutions_distinct_count":1,"corresponding_author_ids":["https://openalex.org/A5085924022"],"corresponding_institution_ids":["https://openalex.org/I197251160"],"apc_list":{"value":3618,"currency":"USD","value_usd":3618},"apc_paid":null,"fwci":1.8463,"has_fulltext":false,"cited_by_count":54,"citation_normalized_percentile":{"value":0.85914778,"is_in_top_1_percent":false,"is_in_top_10_percent":false},"cited_by_percentile_year":{"min":89,"max":99},"biblio":{"volume":"26","issue":"15","first_page":"1920","last_page":"1921"},"is_retracted":false,"is_paratext":false,"is_xpac":false,"primary_topic":{"id":"https://openalex.org/T10062","display_name":"MicroRNA in disease regulation","score":0.9627000093460083,"subfield":{"id":"https://openalex.org/subfields/1306","display_name":"Cancer Research"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},"topics":[{"id":"https://openalex.org/T10062","display_name":"MicroRNA in disease regulation","score":0.9627000093460083,"subfield":{"id":"https://openalex.org/subfields/1306","display_name":"Cancer Research"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},{"id":"https://openalex.org/T10885","display_name":"Gene expression and cancer classification","score":0.005100000184029341,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},{"id":"https://openalex.org/T11765","display_name":"Circular RNAs in diseases","score":0.0024999999441206455,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}}],"keywords":[{"id":"https://openalex.org/keywords/computer-science","display_name":"Computer science","score":0.646168053150177},{"id":"https://openalex.org/keywords/microrna","display_name":"microRNA","score":0.5364046692848206},{"id":"https://openalex.org/keywords/computational-biology","display_name":"Computational biology","score":0.5154198408126831},{"id":"https://openalex.org/keywords/artificial-intelligence","display_name":"Artificial intelligence","score":0.34485918283462524},{"id":"https://openalex.org/keywords/biology","display_name":"Biology","score":0.250969260931015},{"id":"https://openalex.org/keywords/genetics","display_name":"Genetics","score":0.16930899024009705},{"id":"https://openalex.org/keywords/gene","display_name":"Gene","score":0.06744229793548584}],"concepts":[{"id":"https://openalex.org/C41008148","wikidata":"https://www.wikidata.org/wiki/Q21198","display_name":"Computer science","level":0,"score":0.646168053150177},{"id":"https://openalex.org/C145059251","wikidata":"https://www.wikidata.org/wiki/Q310899","display_name":"microRNA","level":3,"score":0.5364046692848206},{"id":"https://openalex.org/C70721500","wikidata":"https://www.wikidata.org/wiki/Q177005","display_name":"Computational biology","level":1,"score":0.5154198408126831},{"id":"https://openalex.org/C154945302","wikidata":"https://www.wikidata.org/wiki/Q11660","display_name":"Artificial intelligence","level":1,"score":0.34485918283462524},{"id":"https://openalex.org/C86803240","wikidata":"https://www.wikidata.org/wiki/Q420","display_name":"Biology","level":0,"score":0.250969260931015},{"id":"https://openalex.org/C54355233","wikidata":"https://www.wikidata.org/wiki/Q7162","display_name":"Genetics","level":1,"score":0.16930899024009705},{"id":"https://openalex.org/C104317684","wikidata":"https://www.wikidata.org/wiki/Q7187","display_name":"Gene","level":2,"score":0.06744229793548584}],"mesh":[{"descriptor_ui":"D000465","descriptor_name":"Algorithms","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D000465","descriptor_name":"Algorithms","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D000465","descriptor_name":"Algorithms","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D005786","descriptor_name":"Gene Expression Regulation","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D005786","descriptor_name":"Gene Expression Regulation","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D005786","descriptor_name":"Gene Expression Regulation","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D019295","descriptor_name":"Computational Biology","qualifier_ui":"Q000379","qualifier_name":"methods","is_major_topic":false},{"descriptor_ui":"D019295","descriptor_name":"Computational Biology","qualifier_ui":"Q000379","qualifier_name":"methods","is_major_topic":false},{"descriptor_ui":"D019295","descriptor_name":"Computational Biology","qualifier_ui":"Q000379","qualifier_name":"methods","is_major_topic":false},{"descriptor_ui":"D020407","descriptor_name":"Internet","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D020407","descriptor_name":"Internet","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D020407","descriptor_name":"Internet","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D020869","descriptor_name":"Gene Expression Profiling","qualifier_ui":"Q000379","qualifier_name":"methods","is_major_topic":false},{"descriptor_ui":"D020869","descriptor_name":"Gene Expression Profiling","qualifier_ui":"Q000379","qualifier_name":"methods","is_major_topic":false},{"descriptor_ui":"D020869","descriptor_name":"Gene Expression Profiling","qualifier_ui":"Q000379","qualifier_name":"methods","is_major_topic":false},{"descriptor_ui":"D035683","descriptor_name":"MicroRNAs","qualifier_ui":"Q000235","qualifier_name":"genetics","is_major_topic":false},{"descriptor_ui":"D035683","descriptor_name":"MicroRNAs","qualifier_ui":"Q000235","qualifier_name":"genetics","is_major_topic":false},{"descriptor_ui":"D035683","descriptor_name":"MicroRNAs","qualifier_ui":"Q000235","qualifier_name":"genetics","is_major_topic":false},{"descriptor_ui":"D035683","descriptor_name":"MicroRNAs","qualifier_ui":"Q000378","qualifier_name":"metabolism","is_major_topic":false},{"descriptor_ui":"D035683","descriptor_name":"MicroRNAs","qualifier_ui":"Q000378","qualifier_name":"metabolism","is_major_topic":false},{"descriptor_ui":"D035683","descriptor_name":"MicroRNAs","qualifier_ui":"Q000378","qualifier_name":"metabolism","is_major_topic":false}],"locations_count":4,"locations":[{"id":"doi:10.1093/bioinformatics/btq298","is_oa":false,"landing_page_url":"https://doi.org/10.1093/bioinformatics/btq298","pdf_url":null,"source":{"id":"https://openalex.org/S52395412","display_name":"Bioinformatics","issn_l":"1367-4803","issn":["1367-4803","1367-4811"],"is_oa":false,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310311648","host_organization_name":"Oxford University Press","host_organization_lineage":["https://openalex.org/P4310311648","https://openalex.org/P4310311647"],"host_organization_lineage_names":["Oxford University Press","University of Oxford"],"type":"journal"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Bioinformatics","raw_type":"journal-article"},{"id":"pmid:20529892","is_oa":false,"landing_page_url":"https://pubmed.ncbi.nlm.nih.gov/20529892","pdf_url":null,"source":{"id":"https://openalex.org/S4306525036","display_name":"PubMed","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I1299303238","host_organization_name":"National Institutes of Health","host_organization_lineage":["https://openalex.org/I1299303238"],"host_organization_lineage_names":[],"type":"repository"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Bioinformatics (Oxford, England)","raw_type":null},{"id":"pmh:oai:CiteSeerX.psu:10.1.1.964.1926","is_oa":false,"landing_page_url":"http://citeseerx.ist.psu.edu/viewdoc/summary?doi=10.1.1.964.1926","pdf_url":null,"source":null,"license":null,"license_id":null,"version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":"http://bioinformatics.oxfordjournals.org/content/26/15/1920.full.pdf","raw_type":"text"},{"id":"pmh:oai:CiteSeerX.psu:10.1.1.980.2057","is_oa":false,"landing_page_url":"http://citeseerx.ist.psu.edu/viewdoc/summary?doi=10.1.1.980.2057","pdf_url":null,"source":null,"license":null,"license_id":null,"version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":"http://bioinformatics.oxfordjournals.org/content/early/2010/06/06/bioinformatics.btq298.full.pdf","raw_type":"text"}],"best_oa_location":null,"sustainable_development_goals":[],"awards":[],"funders":[],"has_content":{"pdf":false,"grobid_xml":false},"content_urls":null,"referenced_works_count":20,"referenced_works":["https://openalex.org/W1978337436","https://openalex.org/W1993827187","https://openalex.org/W2040191060","https://openalex.org/W2044832480","https://openalex.org/W2047291819","https://openalex.org/W2050869737","https://openalex.org/W2070571588","https://openalex.org/W2078899492","https://openalex.org/W2090219560","https://openalex.org/W2120456037","https://openalex.org/W2125818518","https://openalex.org/W2128674168","https://openalex.org/W2144896290","https://openalex.org/W2146771296","https://openalex.org/W2149785901","https://openalex.org/W2160913143","https://openalex.org/W2163199119","https://openalex.org/W2164683872","https://openalex.org/W2166240615","https://openalex.org/W4285719527"],"related_works":["https://openalex.org/W2748952813","https://openalex.org/W2390279801","https://openalex.org/W2358668433","https://openalex.org/W2376932109","https://openalex.org/W2001405890","https://openalex.org/W2737319532","https://openalex.org/W2382290278","https://openalex.org/W2478288626","https://openalex.org/W2350741829","https://openalex.org/W2530322880"],"abstract_inverted_index":{"SUMMARY:":[0],"The":[1,94],"miRror":[2,27,107],"application":[3],"provides":[4,55],"insights":[5],"on":[6,13,39,62],"microRNA":[7],"(miRNA)":[8],"regulation.":[9],"It":[10],"is":[11,108],"based":[12,38,61],"the":[14,52,68,98,101],"notion":[15],"of":[16,23,33,59,64,74,81,92],"a":[17,31,43,56,79,90],"combinatorial":[18],"regulation":[19],"by":[20,67],"an":[21],"ensemble":[22],"miRNAs":[24,48,114],"or":[25,104],"genes.":[26],"integrates":[28],"predictions":[29],"from":[30,113],"dozen":[32],"miRNA":[34],"resources":[35,65],"that":[36],"are":[37],"complementary":[40],"algorithms":[41],"into":[42],"unified":[44],"statistical":[45],"framework.":[46],"For":[47],"set":[49,63,80,91],"as":[50,86],"input,":[51],"online":[53],"tool":[54],"ranked":[57],"list":[58],"targets,":[60],"selected":[66],"user,":[69],"according":[70],"to":[71,88],"their":[72],"significance":[73],"being":[75],"coordinately":[76],"regulated.":[77],"Symmetrically,":[78],"genes":[82],"can":[83,96],"be":[84],"used":[85],"input":[87],"suggest":[89],"miRNAs.":[93],"user":[95],"restrict":[97],"analysis":[99],"for":[100,110],"preferred":[102],"tissue":[103],"cell":[105],"line.":[106],"suitable":[109],"analyzing":[111],"results":[112],"profiling,":[115],"proteomics":[116],"and":[117],"gene":[118],"expression":[119],"arrays.":[120],"AVAILABILITY:":[121],"http://www.proto.cs.huji.ac.il/mirror":[122]},"counts_by_year":[{"year":2024,"cited_by_count":3},{"year":2022,"cited_by_count":3},{"year":2021,"cited_by_count":5},{"year":2020,"cited_by_count":1},{"year":2019,"cited_by_count":3},{"year":2018,"cited_by_count":3},{"year":2017,"cited_by_count":7},{"year":2016,"cited_by_count":2},{"year":2015,"cited_by_count":3},{"year":2014,"cited_by_count":6},{"year":2013,"cited_by_count":5},{"year":2012,"cited_by_count":9}],"updated_date":"2026-08-18T07:49:30.821534","created_date":"2025-10-10T00:00:00"}