{"id":"https://openalex.org/W2129240922","doi":"https://doi.org/10.1093/bioinformatics/btq292","title":"<i>adephylo</i>: new tools for investigating the phylogenetic signal in biological traits","display_name":"<i>adephylo</i>: new tools for investigating the phylogenetic signal in biological traits","publication_year":2010,"publication_date":"2010-06-04","ids":{"openalex":"https://openalex.org/W2129240922","doi":"https://doi.org/10.1093/bioinformatics/btq292","mag":"2129240922","pmid":"https://pubmed.ncbi.nlm.nih.gov/20525823"},"language":"en","primary_location":{"id":"doi:10.1093/bioinformatics/btq292","is_oa":false,"landing_page_url":"https://doi.org/10.1093/bioinformatics/btq292","pdf_url":null,"source":{"id":"https://openalex.org/S52395412","display_name":"Bioinformatics","issn_l":"1367-4803","issn":["1367-4803","1367-4811"],"is_oa":false,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310311648","host_organization_name":"Oxford University Press","host_organization_lineage":["https://openalex.org/P4310311648","https://openalex.org/P4310311647"],"host_organization_lineage_names":["Oxford University Press","University of Oxford"],"type":"journal"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Bioinformatics","raw_type":"journal-article"},"type":"article","indexed_in":["crossref","doaj","pubmed"],"open_access":{"is_oa":false,"oa_status":"closed","oa_url":null,"any_repository_has_fulltext":false},"authorships":[{"author_position":"first","author":{"id":"https://openalex.org/A5013810794","display_name":"Thibaut Jombart","orcid":"https://orcid.org/0000-0003-2226-8692"},"institutions":[{"id":"https://openalex.org/I100532134","display_name":"Universit\u00e9 Claude Bernard Lyon 1","ror":"https://ror.org/029brtt94","country_code":"FR","type":"education","lineage":["https://openalex.org/I100532134","https://openalex.org/I203339264"]},{"id":"https://openalex.org/I4210135640","display_name":"Laboratoire de Biom\u00e9trie et Biologie Evolutive","ror":"https://ror.org/03skt0t88","country_code":"FR","type":"facility","lineage":["https://openalex.org/I100532134","https://openalex.org/I1294671590","https://openalex.org/I1294671590","https://openalex.org/I1326498283","https://openalex.org/I203339264","https://openalex.org/I4210100596","https://openalex.org/I4210107625","https://openalex.org/I4210135640"]},{"id":"https://openalex.org/I1294671590","display_name":"Centre National de la Recherche Scientifique","ror":"https://ror.org/02feahw73","country_code":"FR","type":"funder","lineage":["https://openalex.org/I1294671590"]}],"countries":["FR"],"is_corresponding":true,"raw_author_name":"Thibaut Jombart","raw_affiliation_strings":["1 Department of Infectious Disease Epidemiology, Imperial College - Faculty of Medicine, MRC Centre for Outbreak Analysis and Modelling, St Marys Campus, Norfolk Place, London W2 1PG, UK and 2Universit\u00e9 de Lyon, F-69000, Lyon; Universit\u00e9 Lyon 1; CNRS, UMR5558, Laboratoire de Biom\u00e9trie et Biologie Evolutive, F-69622, Villeurbanne, France"],"affiliations":[{"raw_affiliation_string":"1 Department of Infectious Disease Epidemiology, Imperial College - Faculty of Medicine, MRC Centre for Outbreak Analysis and Modelling, St Marys Campus, Norfolk Place, London W2 1PG, UK and 2Universit\u00e9 de Lyon, F-69000, Lyon; Universit\u00e9 Lyon 1; CNRS, UMR5558, Laboratoire de Biom\u00e9trie et Biologie Evolutive, F-69622, Villeurbanne, France","institution_ids":["https://openalex.org/I4210135640","https://openalex.org/I100532134","https://openalex.org/I1294671590"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5060910782","display_name":"Fran\u00e7ois Balloux","orcid":"https://orcid.org/0000-0003-1978-7715"},"institutions":[{"id":"https://openalex.org/I4210135640","display_name":"Laboratoire de Biom\u00e9trie et Biologie Evolutive","ror":"https://ror.org/03skt0t88","country_code":"FR","type":"facility","lineage":["https://openalex.org/I100532134","https://openalex.org/I1294671590","https://openalex.org/I1294671590","https://openalex.org/I1326498283","https://openalex.org/I203339264","https://openalex.org/I4210100596","https://openalex.org/I4210107625","https://openalex.org/I4210135640"]},{"id":"https://openalex.org/I100532134","display_name":"Universit\u00e9 Claude Bernard Lyon 1","ror":"https://ror.org/029brtt94","country_code":"FR","type":"education","lineage":["https://openalex.org/I100532134","https://openalex.org/I203339264"]},{"id":"https://openalex.org/I1294671590","display_name":"Centre National de la Recherche Scientifique","ror":"https://ror.org/02feahw73","country_code":"FR","type":"funder","lineage":["https://openalex.org/I1294671590"]}],"countries":["FR"],"is_corresponding":false,"raw_author_name":"Fran\u00e7ois Balloux","raw_affiliation_strings":["1 Department of Infectious Disease Epidemiology, Imperial College - Faculty of Medicine, MRC Centre for Outbreak Analysis and Modelling, St Marys Campus, Norfolk Place, London W2 1PG, UK and 2Universit\u00e9 de Lyon, F-69000, Lyon; Universit\u00e9 Lyon 1; CNRS, UMR5558, Laboratoire de Biom\u00e9trie et Biologie Evolutive, F-69622, Villeurbanne, France"],"affiliations":[{"raw_affiliation_string":"1 Department of Infectious Disease Epidemiology, Imperial College - Faculty of Medicine, MRC Centre for Outbreak Analysis and Modelling, St Marys Campus, Norfolk Place, London W2 1PG, UK and 2Universit\u00e9 de Lyon, F-69000, Lyon; Universit\u00e9 Lyon 1; CNRS, UMR5558, Laboratoire de Biom\u00e9trie et Biologie Evolutive, F-69622, Villeurbanne, France","institution_ids":["https://openalex.org/I4210135640","https://openalex.org/I100532134","https://openalex.org/I1294671590"]}]},{"author_position":"last","author":{"id":"https://openalex.org/A5090549112","display_name":"St\u00e9phane Dray","orcid":"https://orcid.org/0000-0003-0153-1105"},"institutions":[{"id":"https://openalex.org/I1294671590","display_name":"Centre National de la Recherche Scientifique","ror":"https://ror.org/02feahw73","country_code":"FR","type":"funder","lineage":["https://openalex.org/I1294671590"]},{"id":"https://openalex.org/I4210135640","display_name":"Laboratoire de Biom\u00e9trie et Biologie Evolutive","ror":"https://ror.org/03skt0t88","country_code":"FR","type":"facility","lineage":["https://openalex.org/I100532134","https://openalex.org/I1294671590","https://openalex.org/I1294671590","https://openalex.org/I1326498283","https://openalex.org/I203339264","https://openalex.org/I4210100596","https://openalex.org/I4210107625","https://openalex.org/I4210135640"]},{"id":"https://openalex.org/I100532134","display_name":"Universit\u00e9 Claude Bernard Lyon 1","ror":"https://ror.org/029brtt94","country_code":"FR","type":"education","lineage":["https://openalex.org/I100532134","https://openalex.org/I203339264"]}],"countries":["FR"],"is_corresponding":true,"raw_author_name":"St\u00e9phane Dray","raw_affiliation_strings":["1 Department of Infectious Disease Epidemiology, Imperial College - Faculty of Medicine, MRC Centre for Outbreak Analysis and Modelling, St Marys Campus, Norfolk Place, London W2 1PG, UK and 2Universit\u00e9 de Lyon, F-69000, Lyon; Universit\u00e9 Lyon 1; CNRS, UMR5558, Laboratoire de Biom\u00e9trie et Biologie Evolutive, F-69622, Villeurbanne, France"],"affiliations":[{"raw_affiliation_string":"1 Department of Infectious Disease Epidemiology, Imperial College - Faculty of Medicine, MRC Centre for Outbreak Analysis and Modelling, St Marys Campus, Norfolk Place, London W2 1PG, UK and 2Universit\u00e9 de Lyon, F-69000, Lyon; Universit\u00e9 Lyon 1; CNRS, UMR5558, Laboratoire de Biom\u00e9trie et Biologie Evolutive, F-69622, Villeurbanne, France","institution_ids":["https://openalex.org/I4210135640","https://openalex.org/I100532134","https://openalex.org/I1294671590"]}]}],"institutions":[],"countries_distinct_count":1,"institutions_distinct_count":3,"corresponding_author_ids":["https://openalex.org/A5013810794","https://openalex.org/A5090549112"],"corresponding_institution_ids":["https://openalex.org/I100532134","https://openalex.org/I1294671590","https://openalex.org/I4210135640"],"apc_list":{"value":3618,"currency":"USD","value_usd":3618},"apc_paid":null,"fwci":18.5462,"has_fulltext":false,"cited_by_count":429,"citation_normalized_percentile":{"value":0.99320286,"is_in_top_1_percent":true,"is_in_top_10_percent":true},"cited_by_percentile_year":{"min":99,"max":100},"biblio":{"volume":"26","issue":"15","first_page":"1907","last_page":"1909"},"is_retracted":false,"is_paratext":false,"is_xpac":false,"primary_topic":{"id":"https://openalex.org/T11354","display_name":"Evolution and Paleontology Studies","score":0.9994000196456909,"subfield":{"id":"https://openalex.org/subfields/1911","display_name":"Paleontology"},"field":{"id":"https://openalex.org/fields/19","display_name":"Earth and Planetary Sciences"},"domain":{"id":"https://openalex.org/domains/3","display_name":"Physical Sciences"}},"topics":[{"id":"https://openalex.org/T11354","display_name":"Evolution and Paleontology Studies","score":0.9994000196456909,"subfield":{"id":"https://openalex.org/subfields/1911","display_name":"Paleontology"},"field":{"id":"https://openalex.org/fields/19","display_name":"Earth and Planetary Sciences"},"domain":{"id":"https://openalex.org/domains/3","display_name":"Physical Sciences"}},{"id":"https://openalex.org/T10012","display_name":"Genetic diversity and population structure","score":0.9932000041007996,"subfield":{"id":"https://openalex.org/subfields/1311","display_name":"Genetics"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},{"id":"https://openalex.org/T12417","display_name":"Morphological variations and asymmetry","score":0.9868999719619751,"subfield":{"id":"https://openalex.org/subfields/2608","display_name":"Geometry and Topology"},"field":{"id":"https://openalex.org/fields/26","display_name":"Mathematics"},"domain":{"id":"https://openalex.org/domains/3","display_name":"Physical Sciences"}}],"keywords":[{"id":"https://openalex.org/keywords/phylogenetic-tree","display_name":"Phylogenetic tree","score":0.934058427810669},{"id":"https://openalex.org/keywords/univariate","display_name":"Univariate","score":0.7329989075660706},{"id":"https://openalex.org/keywords/phylogenetic-comparative-methods","display_name":"Phylogenetic comparative methods","score":0.6302963495254517},{"id":"https://openalex.org/keywords/r-package","display_name":"R package","score":0.6144050359725952},{"id":"https://openalex.org/keywords/phylogenetics","display_name":"Phylogenetics","score":0.4811640679836273},{"id":"https://openalex.org/keywords/software","display_name":"Software","score":0.4323032796382904},{"id":"https://openalex.org/keywords/multivariate-statistics","display_name":"Multivariate statistics","score":0.4141524136066437},{"id":"https://openalex.org/keywords/biology","display_name":"Biology","score":0.41321930289268494},{"id":"https://openalex.org/keywords/computer-science","display_name":"Computer science","score":0.3925892412662506},{"id":"https://openalex.org/keywords/data-mining","display_name":"Data mining","score":0.3251521587371826},{"id":"https://openalex.org/keywords/evolutionary-biology","display_name":"Evolutionary biology","score":0.32495400309562683},{"id":"https://openalex.org/keywords/machine-learning","display_name":"Machine learning","score":0.23495134711265564},{"id":"https://openalex.org/keywords/genetics","display_name":"Genetics","score":0.0959942638874054},{"id":"https://openalex.org/keywords/programming-language","display_name":"Programming language","score":0.07137832045555115}],"concepts":[{"id":"https://openalex.org/C193252679","wikidata":"https://www.wikidata.org/wiki/Q242125","display_name":"Phylogenetic tree","level":3,"score":0.934058427810669},{"id":"https://openalex.org/C199163554","wikidata":"https://www.wikidata.org/wiki/Q1681619","display_name":"Univariate","level":3,"score":0.7329989075660706},{"id":"https://openalex.org/C176771619","wikidata":"https://www.wikidata.org/wiki/Q7189434","display_name":"Phylogenetic comparative methods","level":4,"score":0.6302963495254517},{"id":"https://openalex.org/C2984074130","wikidata":"https://www.wikidata.org/wiki/Q73539779","display_name":"R package","level":2,"score":0.6144050359725952},{"id":"https://openalex.org/C90132467","wikidata":"https://www.wikidata.org/wiki/Q171184","display_name":"Phylogenetics","level":3,"score":0.4811640679836273},{"id":"https://openalex.org/C2777904410","wikidata":"https://www.wikidata.org/wiki/Q7397","display_name":"Software","level":2,"score":0.4323032796382904},{"id":"https://openalex.org/C161584116","wikidata":"https://www.wikidata.org/wiki/Q1952580","display_name":"Multivariate statistics","level":2,"score":0.4141524136066437},{"id":"https://openalex.org/C86803240","wikidata":"https://www.wikidata.org/wiki/Q420","display_name":"Biology","level":0,"score":0.41321930289268494},{"id":"https://openalex.org/C41008148","wikidata":"https://www.wikidata.org/wiki/Q21198","display_name":"Computer science","level":0,"score":0.3925892412662506},{"id":"https://openalex.org/C124101348","wikidata":"https://www.wikidata.org/wiki/Q172491","display_name":"Data mining","level":1,"score":0.3251521587371826},{"id":"https://openalex.org/C78458016","wikidata":"https://www.wikidata.org/wiki/Q840400","display_name":"Evolutionary biology","level":1,"score":0.32495400309562683},{"id":"https://openalex.org/C119857082","wikidata":"https://www.wikidata.org/wiki/Q2539","display_name":"Machine learning","level":1,"score":0.23495134711265564},{"id":"https://openalex.org/C54355233","wikidata":"https://www.wikidata.org/wiki/Q7162","display_name":"Genetics","level":1,"score":0.0959942638874054},{"id":"https://openalex.org/C199360897","wikidata":"https://www.wikidata.org/wiki/Q9143","display_name":"Programming language","level":1,"score":0.07137832045555115},{"id":"https://openalex.org/C104317684","wikidata":"https://www.wikidata.org/wiki/Q7187","display_name":"Gene","level":2,"score":0.0}],"mesh":[{"descriptor_ui":"D010802","descriptor_name":"Phylogeny","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D010802","descriptor_name":"Phylogeny","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D010802","descriptor_name":"Phylogeny","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D010802","descriptor_name":"Phylogeny","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D012984","descriptor_name":"Software","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D012984","descriptor_name":"Software","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D012984","descriptor_name":"Software","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D012984","descriptor_name":"Software","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D019295","descriptor_name":"Computational Biology","qualifier_ui":"Q000379","qualifier_name":"methods","is_major_topic":false},{"descriptor_ui":"D019295","descriptor_name":"Computational Biology","qualifier_ui":"Q000379","qualifier_name":"methods","is_major_topic":false},{"descriptor_ui":"D019295","descriptor_name":"Computational Biology","qualifier_ui":"Q000379","qualifier_name":"methods","is_major_topic":false},{"descriptor_ui":"D019295","descriptor_name":"Computational Biology","qualifier_ui":"Q000379","qualifier_name":"methods","is_major_topic":false}],"locations_count":3,"locations":[{"id":"doi:10.1093/bioinformatics/btq292","is_oa":false,"landing_page_url":"https://doi.org/10.1093/bioinformatics/btq292","pdf_url":null,"source":{"id":"https://openalex.org/S52395412","display_name":"Bioinformatics","issn_l":"1367-4803","issn":["1367-4803","1367-4811"],"is_oa":false,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310311648","host_organization_name":"Oxford University Press","host_organization_lineage":["https://openalex.org/P4310311648","https://openalex.org/P4310311647"],"host_organization_lineage_names":["Oxford University Press","University of Oxford"],"type":"journal"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Bioinformatics","raw_type":"journal-article"},{"id":"pmid:20525823","is_oa":false,"landing_page_url":"https://pubmed.ncbi.nlm.nih.gov/20525823","pdf_url":null,"source":{"id":"https://openalex.org/S4306525036","display_name":"PubMed","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I1299303238","host_organization_name":"National Institutes of Health","host_organization_lineage":["https://openalex.org/I1299303238"],"host_organization_lineage_names":[],"type":"repository"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Bioinformatics (Oxford, England)","raw_type":null},{"id":"pmh:oai:HAL:hal-00539508v1","is_oa":false,"landing_page_url":"https://hal.science/hal-00539508","pdf_url":null,"source":{"id":"https://openalex.org/S4306402512","display_name":"HAL (Le Centre pour la Communication Scientifique Directe)","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I1294671590","host_organization_name":"Centre National de la Recherche Scientifique","host_organization_lineage":["https://openalex.org/I1294671590"],"host_organization_lineage_names":[],"type":"repository"},"license":null,"license_id":null,"version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":"Bioinformatics, 2010, 26 (15), pp.1907-1909. &#x27E8;10.1093/bioinformatics/btq292&#x27E9;","raw_type":"Journal articles"}],"best_oa_location":null,"sustainable_development_goals":[{"id":"https://metadata.un.org/sdg/17","display_name":"Partnerships for the goals","score":0.5299999713897705}],"awards":[],"funders":[{"id":"https://openalex.org/F4320320883","display_name":"Agence Nationale de la Recherche","ror":"https://ror.org/00rbzpz17"}],"has_content":{"grobid_xml":false,"pdf":false},"content_urls":null,"referenced_works_count":36,"referenced_works":["https://openalex.org/W1488393970","https://openalex.org/W1907605851","https://openalex.org/W1909417450","https://openalex.org/W1973546866","https://openalex.org/W1990221500","https://openalex.org/W2008873677","https://openalex.org/W2013410948","https://openalex.org/W2027737873","https://openalex.org/W2070073898","https://openalex.org/W2080696803","https://openalex.org/W2114525641","https://openalex.org/W2117066938","https://openalex.org/W2125269856","https://openalex.org/W2130517250","https://openalex.org/W2130963522","https://openalex.org/W2133360663","https://openalex.org/W2151409320","https://openalex.org/W2174831257","https://openalex.org/W2178773134","https://openalex.org/W2179984775","https://openalex.org/W2180478016","https://openalex.org/W2207526553","https://openalex.org/W2321049928","https://openalex.org/W2328578724","https://openalex.org/W2582743722","https://openalex.org/W3141135807","https://openalex.org/W3144510147","https://openalex.org/W3145179902","https://openalex.org/W4205374493","https://openalex.org/W4236524062","https://openalex.org/W4239250911","https://openalex.org/W4388245928","https://openalex.org/W4399648713","https://openalex.org/W6639675672","https://openalex.org/W6647695050","https://openalex.org/W6668330585"],"related_works":["https://openalex.org/W1828158523","https://openalex.org/W2049578243","https://openalex.org/W2000145235","https://openalex.org/W2122079181","https://openalex.org/W1985848810","https://openalex.org/W2889939530","https://openalex.org/W3121881699","https://openalex.org/W2748838164","https://openalex.org/W2066015000","https://openalex.org/W2912721996"],"abstract_inverted_index":{"The":[0,8],"stable":[1],"version":[2,10],"is":[3,11,25],"available":[4],"from":[5,22],"CRAN:":[6],"http:/cran.r-project.org/web/packages/adephylo/.":[7],"development":[9],"hosted":[12],"by":[13],"R-Forge:":[14],"http://r-forge.r-project.org/projects/adephylo/.":[15],"Both":[16],"versions":[17],"can":[18],"be":[19],"installed":[20],"directly":[21],"R.":[23],"adephylo":[24],"distributed":[26],"under":[27],"the":[28],"GNU":[29],"General":[30],"Public":[31],"Licence":[32],"(>":[33],"or":[34],"=2).":[35]},"counts_by_year":[{"year":2026,"cited_by_count":8},{"year":2025,"cited_by_count":38},{"year":2024,"cited_by_count":45},{"year":2023,"cited_by_count":38},{"year":2022,"cited_by_count":36},{"year":2021,"cited_by_count":52},{"year":2020,"cited_by_count":34},{"year":2019,"cited_by_count":31},{"year":2018,"cited_by_count":26},{"year":2017,"cited_by_count":21},{"year":2016,"cited_by_count":33},{"year":2015,"cited_by_count":16},{"year":2014,"cited_by_count":14},{"year":2013,"cited_by_count":9},{"year":2012,"cited_by_count":21}],"updated_date":"2026-04-14T08:04:32.555800","created_date":"2016-06-24T00:00:00"}
