{"id":"https://openalex.org/W2163102318","doi":"https://doi.org/10.1093/bioinformatics/btq291","title":"An alignment algorithm for bisulfite sequencing using the Applied Biosystems SOLiD System","display_name":"An alignment algorithm for bisulfite sequencing using the Applied Biosystems SOLiD System","publication_year":2010,"publication_date":"2010-06-18","ids":{"openalex":"https://openalex.org/W2163102318","doi":"https://doi.org/10.1093/bioinformatics/btq291","mag":"2163102318","pmid":"https://pubmed.ncbi.nlm.nih.gov/20562417"},"language":"en","primary_location":{"id":"doi:10.1093/bioinformatics/btq291","is_oa":true,"landing_page_url":"https://doi.org/10.1093/bioinformatics/btq291","pdf_url":"https://academic.oup.com/bioinformatics/article-pdf/26/15/1901/48854207/bioinformatics_26_15_1901.pdf","source":{"id":"https://openalex.org/S52395412","display_name":"Bioinformatics","issn_l":"1367-4803","issn":["1367-4803","1367-4811"],"is_oa":false,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310311648","host_organization_name":"Oxford University Press","host_organization_lineage":["https://openalex.org/P4310311648","https://openalex.org/P4310311647"],"host_organization_lineage_names":["Oxford University Press","University of Oxford"],"type":"journal"},"license":"cc-by-nc","license_id":"https://openalex.org/licenses/cc-by-nc","version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Bioinformatics","raw_type":"journal-article"},"type":"article","indexed_in":["crossref","doaj","pubmed"],"open_access":{"is_oa":true,"oa_status":"hybrid","oa_url":"https://academic.oup.com/bioinformatics/article-pdf/26/15/1901/48854207/bioinformatics_26_15_1901.pdf","any_repository_has_fulltext":true},"authorships":[{"author_position":"first","author":{"id":"https://openalex.org/A5061839283","display_name":"Brian Ondov","orcid":"https://orcid.org/0000-0002-0740-1793"},"institutions":[{"id":"https://openalex.org/I130701444","display_name":"Georgia Institute of Technology","ror":"https://ror.org/01zkghx44","country_code":"US","type":"education","lineage":["https://openalex.org/I130701444"]},{"id":"https://openalex.org/I4210100234","display_name":"Life Systems (United States)","ror":"https://ror.org/010d6p438","country_code":"US","type":"company","lineage":["https://openalex.org/I4210100234"]}],"countries":["US"],"is_corresponding":true,"raw_author_name":"Brian D. Ondov","raw_affiliation_strings":["1 National Biodefense Analysis and Countermeasures Center, 110 Thomas Johnson Drive, Frederick, MD 21702, 2School of Biology, Georgia Institute of Technology, 310 Ferst Drive, Atlanta, GA 30332-0230, 3Life Technologies, 850 Lincoln Centre Drive, Foster City, CA 94404 and 4Invitrogen, a division of Life Technologies Corporation, Genetic Systems Business Unit, 5791 Van Allen Way, Carlsbad, CA 92008, USA"],"affiliations":[{"raw_affiliation_string":"1 National Biodefense Analysis and Countermeasures Center, 110 Thomas Johnson Drive, Frederick, MD 21702, 2School of Biology, Georgia Institute of Technology, 310 Ferst Drive, Atlanta, GA 30332-0230, 3Life Technologies, 850 Lincoln Centre Drive, Foster City, CA 94404 and 4Invitrogen, a division of Life Technologies Corporation, Genetic Systems Business Unit, 5791 Van Allen Way, Carlsbad, CA 92008, USA","institution_ids":["https://openalex.org/I4210100234","https://openalex.org/I130701444"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5005425949","display_name":"Charles Cochran","orcid":null},"institutions":[{"id":"https://openalex.org/I130701444","display_name":"Georgia Institute of Technology","ror":"https://ror.org/01zkghx44","country_code":"US","type":"education","lineage":["https://openalex.org/I130701444"]},{"id":"https://openalex.org/I4210100234","display_name":"Life Systems (United States)","ror":"https://ror.org/010d6p438","country_code":"US","type":"company","lineage":["https://openalex.org/I4210100234"]}],"countries":["US"],"is_corresponding":false,"raw_author_name":"Charles Cochran","raw_affiliation_strings":["1 National Biodefense Analysis and Countermeasures Center, 110 Thomas Johnson Drive, Frederick, MD 21702, 2School of Biology, Georgia Institute of Technology, 310 Ferst Drive, Atlanta, GA 30332-0230, 3Life Technologies, 850 Lincoln Centre Drive, Foster City, CA 94404 and 4Invitrogen, a division of Life Technologies Corporation, Genetic Systems Business Unit, 5791 Van Allen Way, Carlsbad, CA 92008, USA"],"affiliations":[{"raw_affiliation_string":"1 National Biodefense Analysis and Countermeasures Center, 110 Thomas Johnson Drive, Frederick, MD 21702, 2School of Biology, Georgia Institute of Technology, 310 Ferst Drive, Atlanta, GA 30332-0230, 3Life Technologies, 850 Lincoln Centre Drive, Foster City, CA 94404 and 4Invitrogen, a division of Life Technologies Corporation, Genetic Systems Business Unit, 5791 Van Allen Way, Carlsbad, CA 92008, USA","institution_ids":["https://openalex.org/I4210100234","https://openalex.org/I130701444"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5112098169","display_name":"Mark Landers","orcid":null},"institutions":[{"id":"https://openalex.org/I4210100234","display_name":"Life Systems (United States)","ror":"https://ror.org/010d6p438","country_code":"US","type":"company","lineage":["https://openalex.org/I4210100234"]},{"id":"https://openalex.org/I130701444","display_name":"Georgia Institute of Technology","ror":"https://ror.org/01zkghx44","country_code":"US","type":"education","lineage":["https://openalex.org/I130701444"]}],"countries":["US"],"is_corresponding":false,"raw_author_name":"Mark Landers","raw_affiliation_strings":["1 National Biodefense Analysis and Countermeasures Center, 110 Thomas Johnson Drive, Frederick, MD 21702, 2School of Biology, Georgia Institute of Technology, 310 Ferst Drive, Atlanta, GA 30332-0230, 3Life Technologies, 850 Lincoln Centre Drive, Foster City, CA 94404 and 4Invitrogen, a division of Life Technologies Corporation, Genetic Systems Business Unit, 5791 Van Allen Way, Carlsbad, CA 92008, USA"],"affiliations":[{"raw_affiliation_string":"1 National Biodefense Analysis and Countermeasures Center, 110 Thomas Johnson Drive, Frederick, MD 21702, 2School of Biology, Georgia Institute of Technology, 310 Ferst Drive, Atlanta, GA 30332-0230, 3Life Technologies, 850 Lincoln Centre Drive, Foster City, CA 94404 and 4Invitrogen, a division of Life Technologies Corporation, Genetic Systems Business Unit, 5791 Van Allen Way, Carlsbad, CA 92008, USA","institution_ids":["https://openalex.org/I4210100234","https://openalex.org/I130701444"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5039470925","display_name":"Gavin Meredith","orcid":null},"institutions":[{"id":"https://openalex.org/I4210100234","display_name":"Life Systems (United States)","ror":"https://ror.org/010d6p438","country_code":"US","type":"company","lineage":["https://openalex.org/I4210100234"]},{"id":"https://openalex.org/I130701444","display_name":"Georgia Institute of Technology","ror":"https://ror.org/01zkghx44","country_code":"US","type":"education","lineage":["https://openalex.org/I130701444"]}],"countries":["US"],"is_corresponding":false,"raw_author_name":"Gavin D. Meredith","raw_affiliation_strings":["1 National Biodefense Analysis and Countermeasures Center, 110 Thomas Johnson Drive, Frederick, MD 21702, 2School of Biology, Georgia Institute of Technology, 310 Ferst Drive, Atlanta, GA 30332-0230, 3Life Technologies, 850 Lincoln Centre Drive, Foster City, CA 94404 and 4Invitrogen, a division of Life Technologies Corporation, Genetic Systems Business Unit, 5791 Van Allen Way, Carlsbad, CA 92008, USA"],"affiliations":[{"raw_affiliation_string":"1 National Biodefense Analysis and Countermeasures Center, 110 Thomas Johnson Drive, Frederick, MD 21702, 2School of Biology, Georgia Institute of Technology, 310 Ferst Drive, Atlanta, GA 30332-0230, 3Life Technologies, 850 Lincoln Centre Drive, Foster City, CA 94404 and 4Invitrogen, a division of Life Technologies Corporation, Genetic Systems Business Unit, 5791 Van Allen Way, Carlsbad, CA 92008, USA","institution_ids":["https://openalex.org/I4210100234","https://openalex.org/I130701444"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5046424466","display_name":"Miroslav Dudas","orcid":null},"institutions":[{"id":"https://openalex.org/I130701444","display_name":"Georgia Institute of Technology","ror":"https://ror.org/01zkghx44","country_code":"US","type":"education","lineage":["https://openalex.org/I130701444"]},{"id":"https://openalex.org/I4210100234","display_name":"Life Systems (United States)","ror":"https://ror.org/010d6p438","country_code":"US","type":"company","lineage":["https://openalex.org/I4210100234"]}],"countries":["US"],"is_corresponding":false,"raw_author_name":"Miroslav Dudas","raw_affiliation_strings":["1 National Biodefense Analysis and Countermeasures Center, 110 Thomas Johnson Drive, Frederick, MD 21702, 2School of Biology, Georgia Institute of Technology, 310 Ferst Drive, Atlanta, GA 30332-0230, 3Life Technologies, 850 Lincoln Centre Drive, Foster City, CA 94404 and 4Invitrogen, a division of Life Technologies Corporation, Genetic Systems Business Unit, 5791 Van Allen Way, Carlsbad, CA 92008, USA"],"affiliations":[{"raw_affiliation_string":"1 National Biodefense Analysis and Countermeasures Center, 110 Thomas Johnson Drive, Frederick, MD 21702, 2School of Biology, Georgia Institute of Technology, 310 Ferst Drive, Atlanta, GA 30332-0230, 3Life Technologies, 850 Lincoln Centre Drive, Foster City, CA 94404 and 4Invitrogen, a division of Life Technologies Corporation, Genetic Systems Business Unit, 5791 Van Allen Way, Carlsbad, CA 92008, USA","institution_ids":["https://openalex.org/I4210100234","https://openalex.org/I130701444"]}]},{"author_position":"last","author":{"id":"https://openalex.org/A5030675176","display_name":"Nicholas H. Bergman","orcid":null},"institutions":[{"id":"https://openalex.org/I4210100234","display_name":"Life Systems (United States)","ror":"https://ror.org/010d6p438","country_code":"US","type":"company","lineage":["https://openalex.org/I4210100234"]},{"id":"https://openalex.org/I130701444","display_name":"Georgia Institute of Technology","ror":"https://ror.org/01zkghx44","country_code":"US","type":"education","lineage":["https://openalex.org/I130701444"]}],"countries":["US"],"is_corresponding":false,"raw_author_name":"Nicholas H. Bergman","raw_affiliation_strings":["1 National Biodefense Analysis and Countermeasures Center, 110 Thomas Johnson Drive, Frederick, MD 21702, 2School of Biology, Georgia Institute of Technology, 310 Ferst Drive, Atlanta, GA 30332-0230, 3Life Technologies, 850 Lincoln Centre Drive, Foster City, CA 94404 and 4Invitrogen, a division of Life Technologies Corporation, Genetic Systems Business Unit, 5791 Van Allen Way, Carlsbad, CA 92008, USA"],"affiliations":[{"raw_affiliation_string":"1 National Biodefense Analysis and Countermeasures Center, 110 Thomas Johnson Drive, Frederick, MD 21702, 2School of Biology, Georgia Institute of Technology, 310 Ferst Drive, Atlanta, GA 30332-0230, 3Life Technologies, 850 Lincoln Centre Drive, Foster City, CA 94404 and 4Invitrogen, a division of Life Technologies Corporation, Genetic Systems Business Unit, 5791 Van Allen Way, Carlsbad, CA 92008, USA","institution_ids":["https://openalex.org/I4210100234","https://openalex.org/I130701444"]}]}],"institutions":[],"countries_distinct_count":1,"institutions_distinct_count":6,"corresponding_author_ids":["https://openalex.org/A5061839283"],"corresponding_institution_ids":["https://openalex.org/I130701444","https://openalex.org/I4210100234"],"apc_list":{"value":3618,"currency":"USD","value_usd":3618},"apc_paid":{"value":3618,"currency":"USD","value_usd":3618},"fwci":1.8976,"has_fulltext":true,"cited_by_count":26,"citation_normalized_percentile":{"value":0.85585926,"is_in_top_1_percent":false,"is_in_top_10_percent":false},"cited_by_percentile_year":{"min":89,"max":99},"biblio":{"volume":"26","issue":"15","first_page":"1901","last_page":"1902"},"is_retracted":false,"is_paratext":false,"is_xpac":false,"primary_topic":{"id":"https://openalex.org/T10269","display_name":"Epigenetics and DNA Methylation","score":0.9962000250816345,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},"topics":[{"id":"https://openalex.org/T10269","display_name":"Epigenetics and DNA Methylation","score":0.9962000250816345,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},{"id":"https://openalex.org/T11269","display_name":"Algorithms and Data Compression","score":0.9904999732971191,"subfield":{"id":"https://openalex.org/subfields/1702","display_name":"Artificial Intelligence"},"field":{"id":"https://openalex.org/fields/17","display_name":"Computer Science"},"domain":{"id":"https://openalex.org/domains/3","display_name":"Physical Sciences"}},{"id":"https://openalex.org/T11247","display_name":"Plant nutrient uptake and metabolism","score":0.9883000254631042,"subfield":{"id":"https://openalex.org/subfields/1110","display_name":"Plant Science"},"field":{"id":"https://openalex.org/fields/11","display_name":"Agricultural and Biological Sciences"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}}],"keywords":[{"id":"https://openalex.org/keywords/bisulfite","display_name":"Bisulfite","score":0.7912964820861816},{"id":"https://openalex.org/keywords/bisulfite-sequencing","display_name":"Bisulfite sequencing","score":0.6564380526542664},{"id":"https://openalex.org/keywords/computer-science","display_name":"Computer science","score":0.5200945138931274},{"id":"https://openalex.org/keywords/computational-biology","display_name":"Computational biology","score":0.5196189284324646},{"id":"https://openalex.org/keywords/sodium-bisulfite","display_name":"Sodium bisulfite","score":0.4707154631614685},{"id":"https://openalex.org/keywords/cpg-site","display_name":"CpG site","score":0.4286915957927704},{"id":"https://openalex.org/keywords/dna-methylation","display_name":"DNA methylation","score":0.3823355734348297},{"id":"https://openalex.org/keywords/biology","display_name":"Biology","score":0.3817726969718933},{"id":"https://openalex.org/keywords/algorithm","display_name":"Algorithm","score":0.35359451174736023},{"id":"https://openalex.org/keywords/genetics","display_name":"Genetics","score":0.25374454259872437},{"id":"https://openalex.org/keywords/gene","display_name":"Gene","score":0.1620238721370697},{"id":"https://openalex.org/keywords/chemistry","display_name":"Chemistry","score":0.13243618607521057}],"concepts":[{"id":"https://openalex.org/C2775959680","wikidata":"https://www.wikidata.org/wiki/Q2718222","display_name":"Bisulfite","level":5,"score":0.7912964820861816},{"id":"https://openalex.org/C189235521","wikidata":"https://www.wikidata.org/wiki/Q4087270","display_name":"Bisulfite sequencing","level":5,"score":0.6564380526542664},{"id":"https://openalex.org/C41008148","wikidata":"https://www.wikidata.org/wiki/Q21198","display_name":"Computer science","level":0,"score":0.5200945138931274},{"id":"https://openalex.org/C70721500","wikidata":"https://www.wikidata.org/wiki/Q177005","display_name":"Computational biology","level":1,"score":0.5196189284324646},{"id":"https://openalex.org/C2775959488","wikidata":"https://www.wikidata.org/wiki/Q407891","display_name":"Sodium bisulfite","level":2,"score":0.4707154631614685},{"id":"https://openalex.org/C140173407","wikidata":"https://www.wikidata.org/wiki/Q1138358","display_name":"CpG site","level":5,"score":0.4286915957927704},{"id":"https://openalex.org/C190727270","wikidata":"https://www.wikidata.org/wiki/Q874745","display_name":"DNA methylation","level":4,"score":0.3823355734348297},{"id":"https://openalex.org/C86803240","wikidata":"https://www.wikidata.org/wiki/Q420","display_name":"Biology","level":0,"score":0.3817726969718933},{"id":"https://openalex.org/C11413529","wikidata":"https://www.wikidata.org/wiki/Q8366","display_name":"Algorithm","level":1,"score":0.35359451174736023},{"id":"https://openalex.org/C54355233","wikidata":"https://www.wikidata.org/wiki/Q7162","display_name":"Genetics","level":1,"score":0.25374454259872437},{"id":"https://openalex.org/C104317684","wikidata":"https://www.wikidata.org/wiki/Q7187","display_name":"Gene","level":2,"score":0.1620238721370697},{"id":"https://openalex.org/C185592680","wikidata":"https://www.wikidata.org/wiki/Q2329","display_name":"Chemistry","level":0,"score":0.13243618607521057},{"id":"https://openalex.org/C178790620","wikidata":"https://www.wikidata.org/wiki/Q11351","display_name":"Organic chemistry","level":1,"score":0.0},{"id":"https://openalex.org/C150194340","wikidata":"https://www.wikidata.org/wiki/Q26972","display_name":"Gene expression","level":3,"score":0.0}],"mesh":[{"descriptor_ui":"D000465","descriptor_name":"Algorithms","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D000465","descriptor_name":"Algorithms","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D000465","descriptor_name":"Algorithms","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D000465","descriptor_name":"Algorithms","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D013447","descriptor_name":"Sulfites","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D013447","descriptor_name":"Sulfites","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D013447","descriptor_name":"Sulfites","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D013447","descriptor_name":"Sulfites","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D016415","descriptor_name":"Sequence Alignment","qualifier_ui":"Q000295","qualifier_name":"instrumentation","is_major_topic":false},{"descriptor_ui":"D016415","descriptor_name":"Sequence Alignment","qualifier_ui":"Q000295","qualifier_name":"instrumentation","is_major_topic":false},{"descriptor_ui":"D016415","descriptor_name":"Sequence Alignment","qualifier_ui":"Q000295","qualifier_name":"instrumentation","is_major_topic":false},{"descriptor_ui":"D016415","descriptor_name":"Sequence Alignment","qualifier_ui":"Q000295","qualifier_name":"instrumentation","is_major_topic":false},{"descriptor_ui":"D016415","descriptor_name":"Sequence Alignment","qualifier_ui":"Q000379","qualifier_name":"methods","is_major_topic":false},{"descriptor_ui":"D016415","descriptor_name":"Sequence Alignment","qualifier_ui":"Q000379","qualifier_name":"methods","is_major_topic":false},{"descriptor_ui":"D016415","descriptor_name":"Sequence Alignment","qualifier_ui":"Q000379","qualifier_name":"methods","is_major_topic":false},{"descriptor_ui":"D016415","descriptor_name":"Sequence Alignment","qualifier_ui":"Q000379","qualifier_name":"methods","is_major_topic":false},{"descriptor_ui":"D017360","descriptor_name":"Arabidopsis","qualifier_ui":"Q000235","qualifier_name":"genetics","is_major_topic":false},{"descriptor_ui":"D017360","descriptor_name":"Arabidopsis","qualifier_ui":"Q000235","qualifier_name":"genetics","is_major_topic":false},{"descriptor_ui":"D017360","descriptor_name":"Arabidopsis","qualifier_ui":"Q000235","qualifier_name":"genetics","is_major_topic":false},{"descriptor_ui":"D017360","descriptor_name":"Arabidopsis","qualifier_ui":"Q000235","qualifier_name":"genetics","is_major_topic":false},{"descriptor_ui":"D017422","descriptor_name":"Sequence Analysis, DNA","qualifier_ui":"Q000295","qualifier_name":"instrumentation","is_major_topic":false},{"descriptor_ui":"D017422","descriptor_name":"Sequence Analysis, DNA","qualifier_ui":"Q000295","qualifier_name":"instrumentation","is_major_topic":false},{"descriptor_ui":"D017422","descriptor_name":"Sequence Analysis, DNA","qualifier_ui":"Q000295","qualifier_name":"instrumentation","is_major_topic":false},{"descriptor_ui":"D017422","descriptor_name":"Sequence Analysis, DNA","qualifier_ui":"Q000295","qualifier_name":"instrumentation","is_major_topic":false},{"descriptor_ui":"D017422","descriptor_name":"Sequence Analysis, DNA","qualifier_ui":"Q000379","qualifier_name":"methods","is_major_topic":false},{"descriptor_ui":"D017422","descriptor_name":"Sequence Analysis, DNA","qualifier_ui":"Q000379","qualifier_name":"methods","is_major_topic":false},{"descriptor_ui":"D017422","descriptor_name":"Sequence Analysis, DNA","qualifier_ui":"Q000379","qualifier_name":"methods","is_major_topic":false},{"descriptor_ui":"D017422","descriptor_name":"Sequence Analysis, DNA","qualifier_ui":"Q000379","qualifier_name":"methods","is_major_topic":false}],"locations_count":5,"locations":[{"id":"doi:10.1093/bioinformatics/btq291","is_oa":true,"landing_page_url":"https://doi.org/10.1093/bioinformatics/btq291","pdf_url":"https://academic.oup.com/bioinformatics/article-pdf/26/15/1901/48854207/bioinformatics_26_15_1901.pdf","source":{"id":"https://openalex.org/S52395412","display_name":"Bioinformatics","issn_l":"1367-4803","issn":["1367-4803","1367-4811"],"is_oa":false,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310311648","host_organization_name":"Oxford University Press","host_organization_lineage":["https://openalex.org/P4310311648","https://openalex.org/P4310311647"],"host_organization_lineage_names":["Oxford University Press","University of Oxford"],"type":"journal"},"license":"cc-by-nc","license_id":"https://openalex.org/licenses/cc-by-nc","version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Bioinformatics","raw_type":"journal-article"},{"id":"pmid:20562417","is_oa":false,"landing_page_url":"https://pubmed.ncbi.nlm.nih.gov/20562417","pdf_url":null,"source":{"id":"https://openalex.org/S4306525036","display_name":"PubMed","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I1299303238","host_organization_name":"National Institutes of Health","host_organization_lineage":["https://openalex.org/I1299303238"],"host_organization_lineage_names":[],"type":"repository"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Bioinformatics (Oxford, England)","raw_type":null},{"id":"pmh:oai:CiteSeerX.psu:10.1.1.875.1264","is_oa":false,"landing_page_url":"http://citeseerx.ist.psu.edu/viewdoc/summary?doi=10.1.1.875.1264","pdf_url":null,"source":null,"license":null,"license_id":null,"version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":"http://bioinformatics.oxfordjournals.org/content/26/15/1901.full.pdf","raw_type":"text"},{"id":"pmh:oai:CiteSeerX.psu:10.1.1.883.1891","is_oa":false,"landing_page_url":"http://citeseerx.ist.psu.edu/viewdoc/summary?doi=10.1.1.883.1891","pdf_url":null,"source":null,"license":null,"license_id":null,"version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":"http://bioinformatics.oxfordjournals.org/content/early/2010/06/18/bioinformatics.btq291.full.pdf","raw_type":"text"},{"id":"pmh:oai:pubmedcentral.nih.gov:2905549","is_oa":true,"landing_page_url":"https://www.ncbi.nlm.nih.gov/pmc/articles/2905549","pdf_url":null,"source":{"id":"https://openalex.org/S2764455111","display_name":"PubMed Central","issn_l":null,"issn":null,"is_oa":true,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I1299303238","host_organization_name":"National Institutes of Health","host_organization_lineage":["https://openalex.org/I1299303238"],"host_organization_lineage_names":[],"type":"repository"},"license":null,"license_id":null,"version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":"Bioinformatics","raw_type":"Text"}],"best_oa_location":{"id":"doi:10.1093/bioinformatics/btq291","is_oa":true,"landing_page_url":"https://doi.org/10.1093/bioinformatics/btq291","pdf_url":"https://academic.oup.com/bioinformatics/article-pdf/26/15/1901/48854207/bioinformatics_26_15_1901.pdf","source":{"id":"https://openalex.org/S52395412","display_name":"Bioinformatics","issn_l":"1367-4803","issn":["1367-4803","1367-4811"],"is_oa":false,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310311648","host_organization_name":"Oxford University Press","host_organization_lineage":["https://openalex.org/P4310311648","https://openalex.org/P4310311647"],"host_organization_lineage_names":["Oxford University Press","University of Oxford"],"type":"journal"},"license":"cc-by-nc","license_id":"https://openalex.org/licenses/cc-by-nc","version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Bioinformatics","raw_type":"journal-article"},"sustainable_development_goals":[],"awards":[],"funders":[{"id":"https://openalex.org/F4320306085","display_name":"U.S. Department of Health and Human Services","ror":"https://ror.org/033jnv181"}],"has_content":{"pdf":true,"grobid_xml":true},"content_urls":{"pdf":"https://content.openalex.org/works/W2163102318.pdf","grobid_xml":"https://content.openalex.org/works/W2163102318.grobid-xml"},"referenced_works_count":5,"referenced_works":["https://openalex.org/W1972418517","https://openalex.org/W1979273476","https://openalex.org/W1989568035","https://openalex.org/W2067151470","https://openalex.org/W2162277333"],"related_works":["https://openalex.org/W2039097638","https://openalex.org/W2087999257","https://openalex.org/W1966904860","https://openalex.org/W2156167910","https://openalex.org/W2008376810","https://openalex.org/W1965301144","https://openalex.org/W2115046713","https://openalex.org/W2134949149","https://openalex.org/W4237395025","https://openalex.org/W2167056069"],"abstract_inverted_index":{"Executables,":[0],"source":[1],"code,":[2],"and":[3],"sample":[4],"data":[5],"are":[6],"available":[7],"at":[8],"http://solidsoftwaretools.com/gf/project/socs/":[9]},"counts_by_year":[{"year":2025,"cited_by_count":1},{"year":2024,"cited_by_count":1},{"year":2020,"cited_by_count":1},{"year":2019,"cited_by_count":5},{"year":2018,"cited_by_count":1},{"year":2016,"cited_by_count":1},{"year":2015,"cited_by_count":2},{"year":2013,"cited_by_count":5},{"year":2012,"cited_by_count":7}],"updated_date":"2026-04-21T08:09:41.155169","created_date":"2025-10-10T00:00:00"}
