{"id":"https://openalex.org/W2161951664","doi":"https://doi.org/10.1093/bioinformatics/btq286","title":"CisGenome Browser: a flexible tool for genomic data visualization","display_name":"CisGenome Browser: a flexible tool for genomic data visualization","publication_year":2010,"publication_date":"2010-05-30","ids":{"openalex":"https://openalex.org/W2161951664","doi":"https://doi.org/10.1093/bioinformatics/btq286","mag":"2161951664","pmid":"https://pubmed.ncbi.nlm.nih.gov/20513664"},"language":"en","primary_location":{"id":"doi:10.1093/bioinformatics/btq286","is_oa":true,"landing_page_url":"https://doi.org/10.1093/bioinformatics/btq286","pdf_url":"https://academic.oup.com/bioinformatics/article-pdf/26/14/1781/48854169/bioinformatics_26_14_1781.pdf","source":{"id":"https://openalex.org/S52395412","display_name":"Bioinformatics","issn_l":"1367-4803","issn":["1367-4803","1367-4811"],"is_oa":false,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310311648","host_organization_name":"Oxford University Press","host_organization_lineage":["https://openalex.org/P4310311648","https://openalex.org/P4310311647"],"host_organization_lineage_names":["Oxford University Press","University of Oxford"],"type":"journal"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Bioinformatics","raw_type":"journal-article"},"type":"article","indexed_in":["crossref","doaj","pubmed"],"open_access":{"is_oa":true,"oa_status":"bronze","oa_url":"https://academic.oup.com/bioinformatics/article-pdf/26/14/1781/48854169/bioinformatics_26_14_1781.pdf","any_repository_has_fulltext":true},"authorships":[{"author_position":"first","author":{"id":"https://openalex.org/A5100779276","display_name":"Hui Jiang","orcid":"https://orcid.org/0000-0003-2718-9811"},"institutions":[{"id":"https://openalex.org/I39555362","display_name":"University of Warwick","ror":"https://ror.org/01a77tt86","country_code":"GB","type":"education","lineage":["https://openalex.org/I39555362"]},{"id":"https://openalex.org/I97018004","display_name":"Stanford University","ror":"https://ror.org/00f54p054","country_code":"US","type":"education","lineage":["https://openalex.org/I97018004"]}],"countries":["GB","US"],"is_corresponding":true,"raw_author_name":"Hui Jiang","raw_affiliation_strings":["1 Department of Statistics, 2 Stanford Genome Technology Center, 3 Department of Electrical Engineering, Stanford University, Stanford, CA 94305, USA, 4 Systems Biology Centre, Coventry House, the University of Warwick, Coventry, CV4 7AL, UK and 5 Department of Health Research and Policy, Stanford University, Stanford, CA 94305, USA"],"affiliations":[{"raw_affiliation_string":"1 Department of Statistics, 2 Stanford Genome Technology Center, 3 Department of Electrical Engineering, Stanford University, Stanford, CA 94305, USA, 4 Systems Biology Centre, Coventry House, the University of Warwick, Coventry, CV4 7AL, UK and 5 Department of Health Research and Policy, Stanford University, Stanford, CA 94305, USA","institution_ids":["https://openalex.org/I97018004","https://openalex.org/I39555362"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5102825004","display_name":"Fan Wang","orcid":"https://orcid.org/0009-0003-3113-4503"},"institutions":[{"id":"https://openalex.org/I97018004","display_name":"Stanford University","ror":"https://ror.org/00f54p054","country_code":"US","type":"education","lineage":["https://openalex.org/I97018004"]},{"id":"https://openalex.org/I39555362","display_name":"University of Warwick","ror":"https://ror.org/01a77tt86","country_code":"GB","type":"education","lineage":["https://openalex.org/I39555362"]}],"countries":["GB","US"],"is_corresponding":false,"raw_author_name":"Fan Wang","raw_affiliation_strings":["1 Department of Statistics, 2 Stanford Genome Technology Center, 3 Department of Electrical Engineering, Stanford University, Stanford, CA 94305, USA, 4 Systems Biology Centre, Coventry House, the University of Warwick, Coventry, CV4 7AL, UK and 5 Department of Health Research and Policy, Stanford University, Stanford, CA 94305, USA"],"affiliations":[{"raw_affiliation_string":"1 Department of Statistics, 2 Stanford Genome Technology Center, 3 Department of Electrical Engineering, Stanford University, Stanford, CA 94305, USA, 4 Systems Biology Centre, Coventry House, the University of Warwick, Coventry, CV4 7AL, UK and 5 Department of Health Research and Policy, Stanford University, Stanford, CA 94305, USA","institution_ids":["https://openalex.org/I97018004","https://openalex.org/I39555362"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5005096029","display_name":"Nigel Dyer","orcid":"https://orcid.org/0000-0001-6158-0510"},"institutions":[{"id":"https://openalex.org/I39555362","display_name":"University of Warwick","ror":"https://ror.org/01a77tt86","country_code":"GB","type":"education","lineage":["https://openalex.org/I39555362"]},{"id":"https://openalex.org/I97018004","display_name":"Stanford University","ror":"https://ror.org/00f54p054","country_code":"US","type":"education","lineage":["https://openalex.org/I97018004"]}],"countries":["GB","US"],"is_corresponding":false,"raw_author_name":"Nigel P. Dyer","raw_affiliation_strings":["1 Department of Statistics, 2 Stanford Genome Technology Center, 3 Department of Electrical Engineering, Stanford University, Stanford, CA 94305, USA, 4 Systems Biology Centre, Coventry House, the University of Warwick, Coventry, CV4 7AL, UK and 5 Department of Health Research and Policy, Stanford University, Stanford, CA 94305, USA"],"affiliations":[{"raw_affiliation_string":"1 Department of Statistics, 2 Stanford Genome Technology Center, 3 Department of Electrical Engineering, Stanford University, Stanford, CA 94305, USA, 4 Systems Biology Centre, Coventry House, the University of Warwick, Coventry, CV4 7AL, UK and 5 Department of Health Research and Policy, Stanford University, Stanford, CA 94305, USA","institution_ids":["https://openalex.org/I97018004","https://openalex.org/I39555362"]}]},{"author_position":"last","author":{"id":"https://openalex.org/A5015401462","display_name":"Wing Hung Wong","orcid":"https://orcid.org/0000-0001-7466-2339"},"institutions":[{"id":"https://openalex.org/I97018004","display_name":"Stanford University","ror":"https://ror.org/00f54p054","country_code":"US","type":"education","lineage":["https://openalex.org/I97018004"]},{"id":"https://openalex.org/I39555362","display_name":"University of Warwick","ror":"https://ror.org/01a77tt86","country_code":"GB","type":"education","lineage":["https://openalex.org/I39555362"]}],"countries":["GB","US"],"is_corresponding":false,"raw_author_name":"Wing Hung Wong","raw_affiliation_strings":["1 Department of Statistics, 2 Stanford Genome Technology Center, 3 Department of Electrical Engineering, Stanford University, Stanford, CA 94305, USA, 4 Systems Biology Centre, Coventry House, the University of Warwick, Coventry, CV4 7AL, UK and 5 Department of Health Research and Policy, Stanford University, Stanford, CA 94305, USA"],"affiliations":[{"raw_affiliation_string":"1 Department of Statistics, 2 Stanford Genome Technology Center, 3 Department of Electrical Engineering, Stanford University, Stanford, CA 94305, USA, 4 Systems Biology Centre, Coventry House, the University of Warwick, Coventry, CV4 7AL, UK and 5 Department of Health Research and Policy, Stanford University, Stanford, CA 94305, USA","institution_ids":["https://openalex.org/I97018004","https://openalex.org/I39555362"]}]}],"institutions":[],"countries_distinct_count":2,"institutions_distinct_count":4,"corresponding_author_ids":["https://openalex.org/A5100779276"],"corresponding_institution_ids":["https://openalex.org/I39555362","https://openalex.org/I97018004"],"apc_list":{"value":3618,"currency":"USD","value_usd":3618},"apc_paid":null,"fwci":1.8504,"has_fulltext":false,"cited_by_count":46,"citation_normalized_percentile":{"value":0.85211105,"is_in_top_1_percent":false,"is_in_top_10_percent":false},"cited_by_percentile_year":{"min":89,"max":99},"biblio":{"volume":"26","issue":"14","first_page":"1781","last_page":"1782"},"is_retracted":false,"is_paratext":false,"is_xpac":false,"primary_topic":{"id":"https://openalex.org/T10015","display_name":"Genomics and Phylogenetic Studies","score":0.9997000098228455,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},"topics":[{"id":"https://openalex.org/T10015","display_name":"Genomics and Phylogenetic Studies","score":0.9997000098228455,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},{"id":"https://openalex.org/T10885","display_name":"Gene expression and cancer classification","score":0.9980999827384949,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},{"id":"https://openalex.org/T10521","display_name":"RNA and protein synthesis mechanisms","score":0.9954000115394592,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}}],"keywords":[{"id":"https://openalex.org/keywords/genome-browser","display_name":"Genome browser","score":0.8624836206436157},{"id":"https://openalex.org/keywords/visualization","display_name":"Visualization","score":0.7855324745178223},{"id":"https://openalex.org/keywords/computer-science","display_name":"Computer science","score":0.7337164878845215},{"id":"https://openalex.org/keywords/web-browser","display_name":"Web browser","score":0.6302891969680786},{"id":"https://openalex.org/keywords/data-visualization","display_name":"Data visualization","score":0.5415854454040527},{"id":"https://openalex.org/keywords/world-wide-web","display_name":"World Wide Web","score":0.503276526927948},{"id":"https://openalex.org/keywords/web-server","display_name":"Web server","score":0.47451251745224},{"id":"https://openalex.org/keywords/open-source","display_name":"Open source","score":0.4196944236755371},{"id":"https://openalex.org/keywords/software","display_name":"Software","score":0.419220894575119},{"id":"https://openalex.org/keywords/genome","display_name":"Genome","score":0.31553906202316284},{"id":"https://openalex.org/keywords/genomics","display_name":"Genomics","score":0.3068046569824219},{"id":"https://openalex.org/keywords/the-internet","display_name":"The Internet","score":0.2759239375591278},{"id":"https://openalex.org/keywords/operating-system","display_name":"Operating system","score":0.26335567235946655},{"id":"https://openalex.org/keywords/data-mining","display_name":"Data mining","score":0.2158292829990387},{"id":"https://openalex.org/keywords/biology","display_name":"Biology","score":0.10872766375541687}],"concepts":[{"id":"https://openalex.org/C2781148417","wikidata":"https://www.wikidata.org/wiki/Q5533486","display_name":"Genome browser","level":5,"score":0.8624836206436157},{"id":"https://openalex.org/C36464697","wikidata":"https://www.wikidata.org/wiki/Q451553","display_name":"Visualization","level":2,"score":0.7855324745178223},{"id":"https://openalex.org/C41008148","wikidata":"https://www.wikidata.org/wiki/Q21198","display_name":"Computer science","level":0,"score":0.7337164878845215},{"id":"https://openalex.org/C2983909278","wikidata":"https://www.wikidata.org/wiki/Q6368","display_name":"Web browser","level":3,"score":0.6302891969680786},{"id":"https://openalex.org/C172367668","wikidata":"https://www.wikidata.org/wiki/Q6504956","display_name":"Data visualization","level":3,"score":0.5415854454040527},{"id":"https://openalex.org/C136764020","wikidata":"https://www.wikidata.org/wiki/Q466","display_name":"World Wide Web","level":1,"score":0.503276526927948},{"id":"https://openalex.org/C11392498","wikidata":"https://www.wikidata.org/wiki/Q11288","display_name":"Web server","level":3,"score":0.47451251745224},{"id":"https://openalex.org/C3018397939","wikidata":"https://www.wikidata.org/wiki/Q3644502","display_name":"Open source","level":3,"score":0.4196944236755371},{"id":"https://openalex.org/C2777904410","wikidata":"https://www.wikidata.org/wiki/Q7397","display_name":"Software","level":2,"score":0.419220894575119},{"id":"https://openalex.org/C141231307","wikidata":"https://www.wikidata.org/wiki/Q7020","display_name":"Genome","level":3,"score":0.31553906202316284},{"id":"https://openalex.org/C189206191","wikidata":"https://www.wikidata.org/wiki/Q222046","display_name":"Genomics","level":4,"score":0.3068046569824219},{"id":"https://openalex.org/C110875604","wikidata":"https://www.wikidata.org/wiki/Q75","display_name":"The Internet","level":2,"score":0.2759239375591278},{"id":"https://openalex.org/C111919701","wikidata":"https://www.wikidata.org/wiki/Q9135","display_name":"Operating system","level":1,"score":0.26335567235946655},{"id":"https://openalex.org/C124101348","wikidata":"https://www.wikidata.org/wiki/Q172491","display_name":"Data mining","level":1,"score":0.2158292829990387},{"id":"https://openalex.org/C86803240","wikidata":"https://www.wikidata.org/wiki/Q420","display_name":"Biology","level":0,"score":0.10872766375541687},{"id":"https://openalex.org/C55493867","wikidata":"https://www.wikidata.org/wiki/Q7094","display_name":"Biochemistry","level":1,"score":0.0},{"id":"https://openalex.org/C104317684","wikidata":"https://www.wikidata.org/wiki/Q7187","display_name":"Gene","level":2,"score":0.0}],"mesh":[{"descriptor_ui":"D003196","descriptor_name":"Computer Graphics","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D003196","descriptor_name":"Computer Graphics","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D003196","descriptor_name":"Computer Graphics","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D012984","descriptor_name":"Software","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D012984","descriptor_name":"Software","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D012984","descriptor_name":"Software","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D014584","descriptor_name":"User-Computer Interface","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D014584","descriptor_name":"User-Computer Interface","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D014584","descriptor_name":"User-Computer Interface","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D016678","descriptor_name":"Genome","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D016678","descriptor_name":"Genome","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D016678","descriptor_name":"Genome","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D020407","descriptor_name":"Internet","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D020407","descriptor_name":"Internet","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D020407","descriptor_name":"Internet","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D023281","descriptor_name":"Genomics","qualifier_ui":"Q000379","qualifier_name":"methods","is_major_topic":false},{"descriptor_ui":"D023281","descriptor_name":"Genomics","qualifier_ui":"Q000379","qualifier_name":"methods","is_major_topic":false},{"descriptor_ui":"D023281","descriptor_name":"Genomics","qualifier_ui":"Q000379","qualifier_name":"methods","is_major_topic":false}],"locations_count":3,"locations":[{"id":"doi:10.1093/bioinformatics/btq286","is_oa":true,"landing_page_url":"https://doi.org/10.1093/bioinformatics/btq286","pdf_url":"https://academic.oup.com/bioinformatics/article-pdf/26/14/1781/48854169/bioinformatics_26_14_1781.pdf","source":{"id":"https://openalex.org/S52395412","display_name":"Bioinformatics","issn_l":"1367-4803","issn":["1367-4803","1367-4811"],"is_oa":false,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310311648","host_organization_name":"Oxford University Press","host_organization_lineage":["https://openalex.org/P4310311648","https://openalex.org/P4310311647"],"host_organization_lineage_names":["Oxford University Press","University of Oxford"],"type":"journal"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Bioinformatics","raw_type":"journal-article"},{"id":"pmid:20513664","is_oa":false,"landing_page_url":"https://pubmed.ncbi.nlm.nih.gov/20513664","pdf_url":null,"source":{"id":"https://openalex.org/S4306525036","display_name":"PubMed","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I1299303238","host_organization_name":"National Institutes of Health","host_organization_lineage":["https://openalex.org/I1299303238"],"host_organization_lineage_names":[],"type":"repository"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Bioinformatics (Oxford, England)","raw_type":null},{"id":"pmh:oai:pubmedcentral.nih.gov:2894522","is_oa":true,"landing_page_url":"https://www.ncbi.nlm.nih.gov/pmc/articles/2894522","pdf_url":null,"source":{"id":"https://openalex.org/S2764455111","display_name":"PubMed Central","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I1299303238","host_organization_name":"National Institutes of Health","host_organization_lineage":["https://openalex.org/I1299303238"],"host_organization_lineage_names":[],"type":"repository"},"license":null,"license_id":null,"version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":"Bioinformatics","raw_type":"Text"}],"best_oa_location":{"id":"doi:10.1093/bioinformatics/btq286","is_oa":true,"landing_page_url":"https://doi.org/10.1093/bioinformatics/btq286","pdf_url":"https://academic.oup.com/bioinformatics/article-pdf/26/14/1781/48854169/bioinformatics_26_14_1781.pdf","source":{"id":"https://openalex.org/S52395412","display_name":"Bioinformatics","issn_l":"1367-4803","issn":["1367-4803","1367-4811"],"is_oa":false,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310311648","host_organization_name":"Oxford University Press","host_organization_lineage":["https://openalex.org/P4310311648","https://openalex.org/P4310311647"],"host_organization_lineage_names":["Oxford University Press","University of Oxford"],"type":"journal"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Bioinformatics","raw_type":"journal-article"},"sustainable_development_goals":[{"score":0.4099999964237213,"display_name":"Partnerships for the goals","id":"https://metadata.un.org/sdg/17"}],"awards":[],"funders":[],"has_content":{"grobid_xml":true,"pdf":true},"content_urls":{"pdf":"https://content.openalex.org/works/W2161951664.pdf","grobid_xml":"https://content.openalex.org/works/W2161951664.grobid-xml"},"referenced_works_count":12,"referenced_works":["https://openalex.org/W190205155","https://openalex.org/W1792175597","https://openalex.org/W1967656072","https://openalex.org/W2096525273","https://openalex.org/W2105071916","https://openalex.org/W2108234281","https://openalex.org/W2152710395","https://openalex.org/W2168783124","https://openalex.org/W2740984310","https://openalex.org/W4206724286","https://openalex.org/W4207034695","https://openalex.org/W4245803912"],"related_works":["https://openalex.org/W2161951664","https://openalex.org/W3174992442","https://openalex.org/W2119426880","https://openalex.org/W4298080220","https://openalex.org/W2949621373","https://openalex.org/W2791266083","https://openalex.org/W2590969672","https://openalex.org/W4302610923","https://openalex.org/W1535150720","https://openalex.org/W2084305201"],"abstract_inverted_index":{"http://biogibbs.stanford.edu/":[0],"approximately":[1],"jiangh/browser/":[2]},"counts_by_year":[{"year":2025,"cited_by_count":1},{"year":2024,"cited_by_count":3},{"year":2023,"cited_by_count":2},{"year":2022,"cited_by_count":1},{"year":2021,"cited_by_count":4},{"year":2020,"cited_by_count":1},{"year":2018,"cited_by_count":4},{"year":2017,"cited_by_count":3},{"year":2016,"cited_by_count":7},{"year":2015,"cited_by_count":6},{"year":2013,"cited_by_count":7},{"year":2012,"cited_by_count":2}],"updated_date":"2025-11-06T03:46:38.306776","created_date":"2025-10-10T00:00:00"}
