{"id":"https://openalex.org/W2172016350","doi":"https://doi.org/10.1093/bioinformatics/btq270","title":"Threshold Average Precision (TAP-<i>k</i>): a measure of retrieval designed for bioinformatics","display_name":"Threshold Average Precision (TAP-<i>k</i>): a measure of retrieval designed for bioinformatics","publication_year":2010,"publication_date":"2010-05-26","ids":{"openalex":"https://openalex.org/W2172016350","doi":"https://doi.org/10.1093/bioinformatics/btq270","mag":"2172016350","pmid":"https://pubmed.ncbi.nlm.nih.gov/20505002"},"language":"en","primary_location":{"id":"doi:10.1093/bioinformatics/btq270","is_oa":true,"landing_page_url":"https://doi.org/10.1093/bioinformatics/btq270","pdf_url":"https://academic.oup.com/bioinformatics/article-pdf/26/14/1708/48852821/bioinformatics_26_14_1708.pdf","source":{"id":"https://openalex.org/S52395412","display_name":"Bioinformatics","issn_l":"1367-4803","issn":["1367-4803","1367-4811"],"is_oa":false,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310311648","host_organization_name":"Oxford University Press","host_organization_lineage":["https://openalex.org/P4310311648","https://openalex.org/P4310311647"],"host_organization_lineage_names":["Oxford University Press","University of Oxford"],"type":"journal"},"license":"cc-by-nc","license_id":"https://openalex.org/licenses/cc-by-nc","version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Bioinformatics","raw_type":"journal-article"},"type":"article","indexed_in":["crossref","doaj","pubmed"],"open_access":{"is_oa":true,"oa_status":"hybrid","oa_url":"https://academic.oup.com/bioinformatics/article-pdf/26/14/1708/48852821/bioinformatics_26_14_1708.pdf","any_repository_has_fulltext":false},"authorships":[{"author_position":"first","author":{"id":"https://openalex.org/A5065514255","display_name":"Hyrum Carroll","orcid":"https://orcid.org/0000-0002-1917-2131"},"institutions":[{"id":"https://openalex.org/I4210109390","display_name":"National Center for Biotechnology Information","ror":"https://ror.org/02meqm098","country_code":"US","type":"facility","lineage":["https://openalex.org/I1299022934","https://openalex.org/I1299303238","https://openalex.org/I2800548410","https://openalex.org/I4210109390"]},{"id":"https://openalex.org/I79272384","display_name":"University of Maryland, Baltimore County","ror":"https://ror.org/02qskvh78","country_code":"US","type":"education","lineage":["https://openalex.org/I79272384"]}],"countries":["US"],"is_corresponding":true,"raw_author_name":"Hyrum D. Carroll","raw_affiliation_strings":["1 National Center for Biotechnology Information, Bethesda, MD 20894 and 2 University of Maryland, Baltimore County, Baltimore, MD 21250, USA"],"affiliations":[{"raw_affiliation_string":"1 National Center for Biotechnology Information, Bethesda, MD 20894 and 2 University of Maryland, Baltimore County, Baltimore, MD 21250, USA","institution_ids":["https://openalex.org/I79272384","https://openalex.org/I4210109390"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5013292761","display_name":"Maricel G. Kann","orcid":"https://orcid.org/0000-0003-0116-3883"},"institutions":[{"id":"https://openalex.org/I79272384","display_name":"University of Maryland, Baltimore County","ror":"https://ror.org/02qskvh78","country_code":"US","type":"education","lineage":["https://openalex.org/I79272384"]},{"id":"https://openalex.org/I4210109390","display_name":"National Center for Biotechnology Information","ror":"https://ror.org/02meqm098","country_code":"US","type":"facility","lineage":["https://openalex.org/I1299022934","https://openalex.org/I1299303238","https://openalex.org/I2800548410","https://openalex.org/I4210109390"]}],"countries":["US"],"is_corresponding":false,"raw_author_name":"Maricel G. Kann","raw_affiliation_strings":["1 National Center for Biotechnology Information, Bethesda, MD 20894 and 2 University of Maryland, Baltimore County, Baltimore, MD 21250, USA"],"affiliations":[{"raw_affiliation_string":"1 National Center for Biotechnology Information, Bethesda, MD 20894 and 2 University of Maryland, Baltimore County, Baltimore, MD 21250, USA","institution_ids":["https://openalex.org/I79272384","https://openalex.org/I4210109390"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5077248996","display_name":"Sergey L. Sheetlin","orcid":null},"institutions":[{"id":"https://openalex.org/I79272384","display_name":"University of Maryland, Baltimore County","ror":"https://ror.org/02qskvh78","country_code":"US","type":"education","lineage":["https://openalex.org/I79272384"]},{"id":"https://openalex.org/I4210109390","display_name":"National Center for Biotechnology Information","ror":"https://ror.org/02meqm098","country_code":"US","type":"facility","lineage":["https://openalex.org/I1299022934","https://openalex.org/I1299303238","https://openalex.org/I2800548410","https://openalex.org/I4210109390"]}],"countries":["US"],"is_corresponding":false,"raw_author_name":"Sergey L. Sheetlin","raw_affiliation_strings":["1 National Center for Biotechnology Information, Bethesda, MD 20894 and 2 University of Maryland, Baltimore County, Baltimore, MD 21250, USA"],"affiliations":[{"raw_affiliation_string":"1 National Center for Biotechnology Information, Bethesda, MD 20894 and 2 University of Maryland, Baltimore County, Baltimore, MD 21250, USA","institution_ids":["https://openalex.org/I79272384","https://openalex.org/I4210109390"]}]},{"author_position":"last","author":{"id":"https://openalex.org/A5039386346","display_name":"John L. Spouge","orcid":"https://orcid.org/0000-0001-6207-1419"},"institutions":[{"id":"https://openalex.org/I79272384","display_name":"University of Maryland, Baltimore County","ror":"https://ror.org/02qskvh78","country_code":"US","type":"education","lineage":["https://openalex.org/I79272384"]},{"id":"https://openalex.org/I4210109390","display_name":"National Center for Biotechnology Information","ror":"https://ror.org/02meqm098","country_code":"US","type":"facility","lineage":["https://openalex.org/I1299022934","https://openalex.org/I1299303238","https://openalex.org/I2800548410","https://openalex.org/I4210109390"]}],"countries":["US"],"is_corresponding":false,"raw_author_name":"John L. Spouge","raw_affiliation_strings":["1 National Center for Biotechnology Information, Bethesda, MD 20894 and 2 University of Maryland, Baltimore County, Baltimore, MD 21250, USA"],"affiliations":[{"raw_affiliation_string":"1 National Center for Biotechnology Information, Bethesda, MD 20894 and 2 University of Maryland, Baltimore County, Baltimore, MD 21250, USA","institution_ids":["https://openalex.org/I79272384","https://openalex.org/I4210109390"]}]}],"institutions":[],"countries_distinct_count":1,"institutions_distinct_count":4,"corresponding_author_ids":["https://openalex.org/A5065514255"],"corresponding_institution_ids":["https://openalex.org/I4210109390","https://openalex.org/I79272384"],"apc_list":{"value":3618,"currency":"USD","value_usd":3618},"apc_paid":{"value":3618,"currency":"USD","value_usd":3618},"fwci":2.4398,"has_fulltext":true,"cited_by_count":34,"citation_normalized_percentile":{"value":0.89137942,"is_in_top_1_percent":false,"is_in_top_10_percent":false},"cited_by_percentile_year":{"min":89,"max":99},"biblio":{"volume":"26","issue":"14","first_page":"1708","last_page":"1713"},"is_retracted":false,"is_paratext":false,"is_xpac":false,"primary_topic":{"id":"https://openalex.org/T12254","display_name":"Machine Learning in Bioinformatics","score":0.9879999756813049,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},"topics":[{"id":"https://openalex.org/T12254","display_name":"Machine Learning in Bioinformatics","score":0.9879999756813049,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},{"id":"https://openalex.org/T11652","display_name":"Imbalanced Data Classification Techniques","score":0.9840999841690063,"subfield":{"id":"https://openalex.org/subfields/1702","display_name":"Artificial Intelligence"},"field":{"id":"https://openalex.org/fields/17","display_name":"Computer Science"},"domain":{"id":"https://openalex.org/domains/3","display_name":"Physical Sciences"}},{"id":"https://openalex.org/T10015","display_name":"Genomics and Phylogenetic Studies","score":0.983299970626831,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}}],"keywords":[{"id":"https://openalex.org/keywords/computer-science","display_name":"Computer science","score":0.6798301935195923},{"id":"https://openalex.org/keywords/measure","display_name":"Measure (data warehouse)","score":0.6557434797286987},{"id":"https://openalex.org/keywords/receiver-operating-characteristic","display_name":"Receiver operating characteristic","score":0.594591498374939},{"id":"https://openalex.org/keywords/information-retrieval","display_name":"Information retrieval","score":0.5434605479240417},{"id":"https://openalex.org/keywords/perl","display_name":"Perl","score":0.4460179805755615},{"id":"https://openalex.org/keywords/ideal","display_name":"Ideal (ethics)","score":0.4350476861000061},{"id":"https://openalex.org/keywords/data-retrieval","display_name":"Data retrieval","score":0.41040894389152527},{"id":"https://openalex.org/keywords/data-mining","display_name":"Data mining","score":0.39144185185432434},{"id":"https://openalex.org/keywords/database","display_name":"Database","score":0.3485775887966156},{"id":"https://openalex.org/keywords/machine-learning","display_name":"Machine learning","score":0.17602816224098206},{"id":"https://openalex.org/keywords/world-wide-web","display_name":"World Wide Web","score":0.1015169620513916}],"concepts":[{"id":"https://openalex.org/C41008148","wikidata":"https://www.wikidata.org/wiki/Q21198","display_name":"Computer science","level":0,"score":0.6798301935195923},{"id":"https://openalex.org/C2780009758","wikidata":"https://www.wikidata.org/wiki/Q6804172","display_name":"Measure (data warehouse)","level":2,"score":0.6557434797286987},{"id":"https://openalex.org/C58471807","wikidata":"https://www.wikidata.org/wiki/Q327120","display_name":"Receiver operating characteristic","level":2,"score":0.594591498374939},{"id":"https://openalex.org/C23123220","wikidata":"https://www.wikidata.org/wiki/Q816826","display_name":"Information retrieval","level":1,"score":0.5434605479240417},{"id":"https://openalex.org/C2777002779","wikidata":"https://www.wikidata.org/wiki/Q42478","display_name":"Perl","level":2,"score":0.4460179805755615},{"id":"https://openalex.org/C2776639384","wikidata":"https://www.wikidata.org/wiki/Q840396","display_name":"Ideal (ethics)","level":2,"score":0.4350476861000061},{"id":"https://openalex.org/C551230270","wikidata":"https://www.wikidata.org/wiki/Q4368942","display_name":"Data retrieval","level":2,"score":0.41040894389152527},{"id":"https://openalex.org/C124101348","wikidata":"https://www.wikidata.org/wiki/Q172491","display_name":"Data mining","level":1,"score":0.39144185185432434},{"id":"https://openalex.org/C77088390","wikidata":"https://www.wikidata.org/wiki/Q8513","display_name":"Database","level":1,"score":0.3485775887966156},{"id":"https://openalex.org/C119857082","wikidata":"https://www.wikidata.org/wiki/Q2539","display_name":"Machine learning","level":1,"score":0.17602816224098206},{"id":"https://openalex.org/C136764020","wikidata":"https://www.wikidata.org/wiki/Q466","display_name":"World Wide Web","level":1,"score":0.1015169620513916},{"id":"https://openalex.org/C111472728","wikidata":"https://www.wikidata.org/wiki/Q9471","display_name":"Epistemology","level":1,"score":0.0},{"id":"https://openalex.org/C138885662","wikidata":"https://www.wikidata.org/wiki/Q5891","display_name":"Philosophy","level":0,"score":0.0}],"mesh":[{"descriptor_ui":"D012372","descriptor_name":"ROC Curve","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D012372","descriptor_name":"ROC Curve","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D012372","descriptor_name":"ROC Curve","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D012984","descriptor_name":"Software","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D012984","descriptor_name":"Software","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D012984","descriptor_name":"Software","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D016208","descriptor_name":"Databases, Factual","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D016208","descriptor_name":"Databases, Factual","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D016208","descriptor_name":"Databases, Factual","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D016247","descriptor_name":"Information Storage and Retrieval","qualifier_ui":"Q000379","qualifier_name":"methods","is_major_topic":false},{"descriptor_ui":"D016247","descriptor_name":"Information Storage and Retrieval","qualifier_ui":"Q000379","qualifier_name":"methods","is_major_topic":false},{"descriptor_ui":"D016247","descriptor_name":"Information Storage and Retrieval","qualifier_ui":"Q000379","qualifier_name":"methods","is_major_topic":false},{"descriptor_ui":"D019295","descriptor_name":"Computational Biology","qualifier_ui":"Q000379","qualifier_name":"methods","is_major_topic":false},{"descriptor_ui":"D019295","descriptor_name":"Computational Biology","qualifier_ui":"Q000379","qualifier_name":"methods","is_major_topic":false},{"descriptor_ui":"D019295","descriptor_name":"Computational Biology","qualifier_ui":"Q000379","qualifier_name":"methods","is_major_topic":false},{"descriptor_ui":"D020407","descriptor_name":"Internet","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D020407","descriptor_name":"Internet","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D020407","descriptor_name":"Internet","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false}],"locations_count":4,"locations":[{"id":"doi:10.1093/bioinformatics/btq270","is_oa":true,"landing_page_url":"https://doi.org/10.1093/bioinformatics/btq270","pdf_url":"https://academic.oup.com/bioinformatics/article-pdf/26/14/1708/48852821/bioinformatics_26_14_1708.pdf","source":{"id":"https://openalex.org/S52395412","display_name":"Bioinformatics","issn_l":"1367-4803","issn":["1367-4803","1367-4811"],"is_oa":false,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310311648","host_organization_name":"Oxford University Press","host_organization_lineage":["https://openalex.org/P4310311648","https://openalex.org/P4310311647"],"host_organization_lineage_names":["Oxford University Press","University of Oxford"],"type":"journal"},"license":"cc-by-nc","license_id":"https://openalex.org/licenses/cc-by-nc","version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Bioinformatics","raw_type":"journal-article"},{"id":"pmid:20505002","is_oa":false,"landing_page_url":"https://pubmed.ncbi.nlm.nih.gov/20505002","pdf_url":null,"source":{"id":"https://openalex.org/S4306525036","display_name":"PubMed","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I1299303238","host_organization_name":"National Institutes of Health","host_organization_lineage":["https://openalex.org/I1299303238"],"host_organization_lineage_names":[],"type":"repository"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Bioinformatics (Oxford, England)","raw_type":null},{"id":"pmh:oai:csuepress.columbusstate.edu:bibliography_faculty-4330","is_oa":false,"landing_page_url":"https://csuepress.columbusstate.edu/bibliography_faculty/3376","pdf_url":null,"source":{"id":"https://openalex.org/S4377196711","display_name":"CSU ePress (Columbus State University)","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I199172307","host_organization_name":"Columbus State University","host_organization_lineage":["https://openalex.org/I199172307"],"host_organization_lineage_names":[],"type":"repository"},"license":null,"license_id":null,"version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":"Faculty Bibliography","raw_type":"text"},{"id":"pmh:oai:europepmc.org:1955791","is_oa":false,"landing_page_url":"https://www.ncbi.nlm.nih.gov/pmc/articles/2894514","pdf_url":null,"source":{"id":"https://openalex.org/S4306400806","display_name":"Europe PMC (PubMed Central)","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I1303153112","host_organization_name":"European Bioinformatics Institute","host_organization_lineage":["https://openalex.org/I1303153112"],"host_organization_lineage_names":[],"type":"repository"},"license":null,"license_id":null,"version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":null,"raw_type":"Text"}],"best_oa_location":{"id":"doi:10.1093/bioinformatics/btq270","is_oa":true,"landing_page_url":"https://doi.org/10.1093/bioinformatics/btq270","pdf_url":"https://academic.oup.com/bioinformatics/article-pdf/26/14/1708/48852821/bioinformatics_26_14_1708.pdf","source":{"id":"https://openalex.org/S52395412","display_name":"Bioinformatics","issn_l":"1367-4803","issn":["1367-4803","1367-4811"],"is_oa":false,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310311648","host_organization_name":"Oxford University Press","host_organization_lineage":["https://openalex.org/P4310311648","https://openalex.org/P4310311647"],"host_organization_lineage_names":["Oxford University Press","University of Oxford"],"type":"journal"},"license":"cc-by-nc","license_id":"https://openalex.org/licenses/cc-by-nc","version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Bioinformatics","raw_type":"journal-article"},"sustainable_development_goals":[],"awards":[{"id":"https://openalex.org/G200805936","display_name":null,"funder_award_id":"1K22CA143148","funder_id":"https://openalex.org/F4320332161","funder_display_name":"National Institutes of Health"},{"id":"https://openalex.org/G3497591915","display_name":null,"funder_award_id":"(NIH)","funder_id":"https://openalex.org/F4320332161","funder_display_name":"National Institutes of Health"},{"id":"https://openalex.org/G7029173609","display_name":null,"funder_award_id":"K22CA143148","funder_id":"https://openalex.org/F4320332161","funder_display_name":"National Institutes of Health"}],"funders":[{"id":"https://openalex.org/F4320332161","display_name":"National Institutes of Health","ror":"https://ror.org/01cwqze88"},{"id":"https://openalex.org/F4320337372","display_name":"U.S. National Library of Medicine","ror":"https://ror.org/0060t0j89"}],"has_content":{"pdf":true,"grobid_xml":true},"content_urls":{"pdf":"https://content.openalex.org/works/W2172016350.pdf","grobid_xml":"https://content.openalex.org/works/W2172016350.grobid-xml"},"referenced_works_count":32,"referenced_works":["https://openalex.org/W1538463803","https://openalex.org/W1966570126","https://openalex.org/W1972718882","https://openalex.org/W1974160388","https://openalex.org/W1976526581","https://openalex.org/W1990534247","https://openalex.org/W1990748933","https://openalex.org/W2027257218","https://openalex.org/W2043887901","https://openalex.org/W2084787613","https://openalex.org/W2096234478","https://openalex.org/W2106093878","https://openalex.org/W2109872885","https://openalex.org/W2110434201","https://openalex.org/W2118475569","https://openalex.org/W2123157758","https://openalex.org/W2130302792","https://openalex.org/W2133312664","https://openalex.org/W2137959503","https://openalex.org/W2139271731","https://openalex.org/W2139621307","https://openalex.org/W2140735973","https://openalex.org/W2140821974","https://openalex.org/W2141885858","https://openalex.org/W2151831732","https://openalex.org/W2152782244","https://openalex.org/W2157975034","https://openalex.org/W2158698691","https://openalex.org/W4210323379","https://openalex.org/W4253158681","https://openalex.org/W4299445015","https://openalex.org/W6679289573"],"related_works":["https://openalex.org/W2480056510","https://openalex.org/W2412623563","https://openalex.org/W190299232","https://openalex.org/W1521481095","https://openalex.org/W594361471","https://openalex.org/W2604964690","https://openalex.org/W2417897055","https://openalex.org/W2613359208","https://openalex.org/W2291334382","https://openalex.org/W4249676448"],"abstract_inverted_index":{"The":[0],"TAP-k":[1],"web":[2],"server":[3],"and":[4],"downloadable":[5],"Perl":[6],"script":[7],"are":[8],"freely":[9],"available":[10],"at":[11],"http://www.ncbi.nlm.nih.gov/CBBresearch/Spouge/html.ncbi/tap/":[12]},"counts_by_year":[{"year":2024,"cited_by_count":1},{"year":2022,"cited_by_count":1},{"year":2021,"cited_by_count":1},{"year":2020,"cited_by_count":5},{"year":2019,"cited_by_count":1},{"year":2015,"cited_by_count":3},{"year":2014,"cited_by_count":4},{"year":2013,"cited_by_count":2},{"year":2012,"cited_by_count":6}],"updated_date":"2026-04-10T15:06:20.359241","created_date":"2016-06-24T00:00:00"}
