{"id":"https://openalex.org/W2161481677","doi":"https://doi.org/10.1093/bioinformatics/btq255","title":"Pathgroups, a dynamic data structure for genome reconstruction problems","display_name":"Pathgroups, a dynamic data structure for genome reconstruction problems","publication_year":2010,"publication_date":"2010-05-18","ids":{"openalex":"https://openalex.org/W2161481677","doi":"https://doi.org/10.1093/bioinformatics/btq255","mag":"2161481677","pmid":"https://pubmed.ncbi.nlm.nih.gov/20483815"},"language":"en","primary_location":{"id":"doi:10.1093/bioinformatics/btq255","is_oa":true,"landing_page_url":"https://doi.org/10.1093/bioinformatics/btq255","pdf_url":"https://academic.oup.com/bioinformatics/article-pdf/26/13/1587/48852764/bioinformatics_26_13_1587.pdf","source":{"id":"https://openalex.org/S52395412","display_name":"Bioinformatics","issn_l":"1367-4803","issn":["1367-4803","1367-4811"],"is_oa":false,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310311648","host_organization_name":"Oxford University Press","host_organization_lineage":["https://openalex.org/P4310311648","https://openalex.org/P4310311647"],"host_organization_lineage_names":["Oxford University Press","University of Oxford"],"type":"journal"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Bioinformatics","raw_type":"journal-article"},"type":"article","indexed_in":["crossref","doaj","pubmed"],"open_access":{"is_oa":true,"oa_status":"bronze","oa_url":"https://academic.oup.com/bioinformatics/article-pdf/26/13/1587/48852764/bioinformatics_26_13_1587.pdf","any_repository_has_fulltext":false},"authorships":[{"author_position":"first","author":{"id":"https://openalex.org/A5106265672","display_name":"Chunfang Zheng","orcid":"https://orcid.org/0000-0003-4205-4501"},"institutions":[{"id":"https://openalex.org/I70931966","display_name":"Universit\u00e9 de Montr\u00e9al","ror":"https://ror.org/0161xgx34","country_code":"CA","type":"education","lineage":["https://openalex.org/I70931966"]},{"id":"https://openalex.org/I4210111842","display_name":"Computer Research Institute of Montr\u00e9al","ror":"https://ror.org/0279d5115","country_code":"CA","type":"nonprofit","lineage":["https://openalex.org/I4210111842"]}],"countries":["CA"],"is_corresponding":true,"raw_author_name":"Chunfang Zheng","raw_affiliation_strings":["D\u00e9partement d'informatique et de recherche op\u00e9rationnelle, Universit\u00e9 de Montr\u00e9al, Canada"],"affiliations":[{"raw_affiliation_string":"D\u00e9partement d'informatique et de recherche op\u00e9rationnelle, Universit\u00e9 de Montr\u00e9al, Canada","institution_ids":["https://openalex.org/I4210111842","https://openalex.org/I70931966"]}]}],"institutions":[],"countries_distinct_count":1,"institutions_distinct_count":1,"corresponding_author_ids":["https://openalex.org/A5106265672"],"corresponding_institution_ids":["https://openalex.org/I4210111842","https://openalex.org/I70931966"],"apc_list":{"value":3618,"currency":"USD","value_usd":3618},"apc_paid":null,"fwci":1.4811,"has_fulltext":false,"cited_by_count":18,"citation_normalized_percentile":{"value":0.84268085,"is_in_top_1_percent":false,"is_in_top_10_percent":false},"cited_by_percentile_year":{"min":89,"max":98},"biblio":{"volume":"26","issue":"13","first_page":"1587","last_page":"1594"},"is_retracted":false,"is_paratext":false,"is_xpac":false,"primary_topic":{"id":"https://openalex.org/T13664","display_name":"Genome Rearrangement Algorithms","score":0.9994999766349792,"subfield":{"id":"https://openalex.org/subfields/1311","display_name":"Genetics"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},"topics":[{"id":"https://openalex.org/T13664","display_name":"Genome Rearrangement Algorithms","score":0.9994999766349792,"subfield":{"id":"https://openalex.org/subfields/1311","display_name":"Genetics"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},{"id":"https://openalex.org/T10434","display_name":"Chromosomal and Genetic Variations","score":0.9803000092506409,"subfield":{"id":"https://openalex.org/subfields/1110","display_name":"Plant Science"},"field":{"id":"https://openalex.org/fields/11","display_name":"Agricultural and Biological Sciences"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},{"id":"https://openalex.org/T10015","display_name":"Genomics and Phylogenetic Studies","score":0.9726999998092651,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}}],"keywords":[{"id":"https://openalex.org/keywords/heuristics","display_name":"Heuristics","score":0.8448013067245483},{"id":"https://openalex.org/keywords/computer-science","display_name":"Computer science","score":0.6464253664016724},{"id":"https://openalex.org/keywords/heuristic","display_name":"Heuristic","score":0.6305736303329468},{"id":"https://openalex.org/keywords/greedy-algorithm","display_name":"Greedy algorithm","score":0.6258484125137329},{"id":"https://openalex.org/keywords/genome","display_name":"Genome","score":0.6111408472061157},{"id":"https://openalex.org/keywords/set","display_name":"Set (abstract data type)","score":0.5828534960746765},{"id":"https://openalex.org/keywords/data-structure","display_name":"Data structure","score":0.536695659160614},{"id":"https://openalex.org/keywords/sequence","display_name":"Sequence (biology)","score":0.4751063287258148},{"id":"https://openalex.org/keywords/algorithm","display_name":"Algorithm","score":0.45510944724082947},{"id":"https://openalex.org/keywords/scheme","display_name":"Scheme (mathematics)","score":0.41514381766319275},{"id":"https://openalex.org/keywords/theoretical-computer-science","display_name":"Theoretical computer science","score":0.39519643783569336},{"id":"https://openalex.org/keywords/data-mining","display_name":"Data mining","score":0.3585491180419922},{"id":"https://openalex.org/keywords/computational-biology","display_name":"Computational biology","score":0.35076314210891724},{"id":"https://openalex.org/keywords/gene","display_name":"Gene","score":0.23487061262130737},{"id":"https://openalex.org/keywords/artificial-intelligence","display_name":"Artificial intelligence","score":0.22169476747512817},{"id":"https://openalex.org/keywords/biology","display_name":"Biology","score":0.21866938471794128},{"id":"https://openalex.org/keywords/mathematics","display_name":"Mathematics","score":0.21505939960479736},{"id":"https://openalex.org/keywords/genetics","display_name":"Genetics","score":0.14060580730438232}],"concepts":[{"id":"https://openalex.org/C127705205","wikidata":"https://www.wikidata.org/wiki/Q5748245","display_name":"Heuristics","level":2,"score":0.8448013067245483},{"id":"https://openalex.org/C41008148","wikidata":"https://www.wikidata.org/wiki/Q21198","display_name":"Computer science","level":0,"score":0.6464253664016724},{"id":"https://openalex.org/C173801870","wikidata":"https://www.wikidata.org/wiki/Q201413","display_name":"Heuristic","level":2,"score":0.6305736303329468},{"id":"https://openalex.org/C51823790","wikidata":"https://www.wikidata.org/wiki/Q504353","display_name":"Greedy algorithm","level":2,"score":0.6258484125137329},{"id":"https://openalex.org/C141231307","wikidata":"https://www.wikidata.org/wiki/Q7020","display_name":"Genome","level":3,"score":0.6111408472061157},{"id":"https://openalex.org/C177264268","wikidata":"https://www.wikidata.org/wiki/Q1514741","display_name":"Set (abstract data type)","level":2,"score":0.5828534960746765},{"id":"https://openalex.org/C162319229","wikidata":"https://www.wikidata.org/wiki/Q175263","display_name":"Data structure","level":2,"score":0.536695659160614},{"id":"https://openalex.org/C2778112365","wikidata":"https://www.wikidata.org/wiki/Q3511065","display_name":"Sequence (biology)","level":2,"score":0.4751063287258148},{"id":"https://openalex.org/C11413529","wikidata":"https://www.wikidata.org/wiki/Q8366","display_name":"Algorithm","level":1,"score":0.45510944724082947},{"id":"https://openalex.org/C77618280","wikidata":"https://www.wikidata.org/wiki/Q1155772","display_name":"Scheme (mathematics)","level":2,"score":0.41514381766319275},{"id":"https://openalex.org/C80444323","wikidata":"https://www.wikidata.org/wiki/Q2878974","display_name":"Theoretical computer science","level":1,"score":0.39519643783569336},{"id":"https://openalex.org/C124101348","wikidata":"https://www.wikidata.org/wiki/Q172491","display_name":"Data mining","level":1,"score":0.3585491180419922},{"id":"https://openalex.org/C70721500","wikidata":"https://www.wikidata.org/wiki/Q177005","display_name":"Computational biology","level":1,"score":0.35076314210891724},{"id":"https://openalex.org/C104317684","wikidata":"https://www.wikidata.org/wiki/Q7187","display_name":"Gene","level":2,"score":0.23487061262130737},{"id":"https://openalex.org/C154945302","wikidata":"https://www.wikidata.org/wiki/Q11660","display_name":"Artificial intelligence","level":1,"score":0.22169476747512817},{"id":"https://openalex.org/C86803240","wikidata":"https://www.wikidata.org/wiki/Q420","display_name":"Biology","level":0,"score":0.21866938471794128},{"id":"https://openalex.org/C33923547","wikidata":"https://www.wikidata.org/wiki/Q395","display_name":"Mathematics","level":0,"score":0.21505939960479736},{"id":"https://openalex.org/C54355233","wikidata":"https://www.wikidata.org/wiki/Q7162","display_name":"Genetics","level":1,"score":0.14060580730438232},{"id":"https://openalex.org/C111919701","wikidata":"https://www.wikidata.org/wiki/Q9135","display_name":"Operating system","level":1,"score":0.0},{"id":"https://openalex.org/C134306372","wikidata":"https://www.wikidata.org/wiki/Q7754","display_name":"Mathematical analysis","level":1,"score":0.0},{"id":"https://openalex.org/C199360897","wikidata":"https://www.wikidata.org/wiki/Q9143","display_name":"Programming language","level":1,"score":0.0}],"mesh":[{"descriptor_ui":"D000465","descriptor_name":"Algorithms","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D000465","descriptor_name":"Algorithms","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D000465","descriptor_name":"Algorithms","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D010802","descriptor_name":"Phylogeny","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D010802","descriptor_name":"Phylogeny","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D010802","descriptor_name":"Phylogeny","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D012441","descriptor_name":"Saccharomyces cerevisiae","qualifier_ui":"Q000235","qualifier_name":"genetics","is_major_topic":false},{"descriptor_ui":"D012441","descriptor_name":"Saccharomyces cerevisiae","qualifier_ui":"Q000235","qualifier_name":"genetics","is_major_topic":false},{"descriptor_ui":"D012441","descriptor_name":"Saccharomyces cerevisiae","qualifier_ui":"Q000235","qualifier_name":"genetics","is_major_topic":false},{"descriptor_ui":"D015003","descriptor_name":"Yeasts","qualifier_ui":"Q000235","qualifier_name":"genetics","is_major_topic":false},{"descriptor_ui":"D015003","descriptor_name":"Yeasts","qualifier_ui":"Q000235","qualifier_name":"genetics","is_major_topic":false},{"descriptor_ui":"D015003","descriptor_name":"Yeasts","qualifier_ui":"Q000235","qualifier_name":"genetics","is_major_topic":false},{"descriptor_ui":"D016681","descriptor_name":"Genome, Fungal","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D016681","descriptor_name":"Genome, Fungal","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D016681","descriptor_name":"Genome, Fungal","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D019295","descriptor_name":"Computational Biology","qualifier_ui":"Q000379","qualifier_name":"methods","is_major_topic":false},{"descriptor_ui":"D019295","descriptor_name":"Computational Biology","qualifier_ui":"Q000379","qualifier_name":"methods","is_major_topic":false},{"descriptor_ui":"D019295","descriptor_name":"Computational Biology","qualifier_ui":"Q000379","qualifier_name":"methods","is_major_topic":false},{"descriptor_ui":"D023061","descriptor_name":"Gene Order","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D023061","descriptor_name":"Gene Order","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D023061","descriptor_name":"Gene Order","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true}],"locations_count":2,"locations":[{"id":"doi:10.1093/bioinformatics/btq255","is_oa":true,"landing_page_url":"https://doi.org/10.1093/bioinformatics/btq255","pdf_url":"https://academic.oup.com/bioinformatics/article-pdf/26/13/1587/48852764/bioinformatics_26_13_1587.pdf","source":{"id":"https://openalex.org/S52395412","display_name":"Bioinformatics","issn_l":"1367-4803","issn":["1367-4803","1367-4811"],"is_oa":false,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310311648","host_organization_name":"Oxford University Press","host_organization_lineage":["https://openalex.org/P4310311648","https://openalex.org/P4310311647"],"host_organization_lineage_names":["Oxford University Press","University of Oxford"],"type":"journal"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Bioinformatics","raw_type":"journal-article"},{"id":"pmid:20483815","is_oa":false,"landing_page_url":"https://pubmed.ncbi.nlm.nih.gov/20483815","pdf_url":null,"source":{"id":"https://openalex.org/S4306525036","display_name":"PubMed","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I1299303238","host_organization_name":"National Institutes of Health","host_organization_lineage":["https://openalex.org/I1299303238"],"host_organization_lineage_names":[],"type":"repository"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Bioinformatics (Oxford, England)","raw_type":null}],"best_oa_location":{"id":"doi:10.1093/bioinformatics/btq255","is_oa":true,"landing_page_url":"https://doi.org/10.1093/bioinformatics/btq255","pdf_url":"https://academic.oup.com/bioinformatics/article-pdf/26/13/1587/48852764/bioinformatics_26_13_1587.pdf","source":{"id":"https://openalex.org/S52395412","display_name":"Bioinformatics","issn_l":"1367-4803","issn":["1367-4803","1367-4811"],"is_oa":false,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310311648","host_organization_name":"Oxford University Press","host_organization_lineage":["https://openalex.org/P4310311648","https://openalex.org/P4310311647"],"host_organization_lineage_names":["Oxford University Press","University of Oxford"],"type":"journal"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Bioinformatics","raw_type":"journal-article"},"sustainable_development_goals":[],"awards":[],"funders":[{"id":"https://openalex.org/F4320334593","display_name":"Natural Sciences and Engineering Research Council of Canada","ror":"https://ror.org/01h531d29"}],"has_content":{"pdf":true,"grobid_xml":true},"content_urls":{"pdf":"https://content.openalex.org/works/W2161481677.pdf","grobid_xml":"https://content.openalex.org/works/W2161481677.grobid-xml"},"referenced_works_count":48,"referenced_works":["https://openalex.org/W74509308","https://openalex.org/W102313747","https://openalex.org/W1485855914","https://openalex.org/W1491688952","https://openalex.org/W1495265850","https://openalex.org/W1574973644","https://openalex.org/W1604502977","https://openalex.org/W1794479819","https://openalex.org/W1834619628","https://openalex.org/W1964612763","https://openalex.org/W1979469999","https://openalex.org/W1985672280","https://openalex.org/W2006568928","https://openalex.org/W2008047531","https://openalex.org/W2029036185","https://openalex.org/W2045149392","https://openalex.org/W2049796549","https://openalex.org/W2050077513","https://openalex.org/W2064911343","https://openalex.org/W2091507729","https://openalex.org/W2097710447","https://openalex.org/W2132150084","https://openalex.org/W2133090982","https://openalex.org/W2134038527","https://openalex.org/W2145433078","https://openalex.org/W2145757848","https://openalex.org/W2149628296","https://openalex.org/W2156923845","https://openalex.org/W2165422244","https://openalex.org/W2173266544","https://openalex.org/W2219944153","https://openalex.org/W2331222364","https://openalex.org/W2477408078","https://openalex.org/W3214387133","https://openalex.org/W4213205621","https://openalex.org/W4244097892","https://openalex.org/W4285719527","https://openalex.org/W6604173274","https://openalex.org/W6629011569","https://openalex.org/W6629524833","https://openalex.org/W6629526232","https://openalex.org/W6634545580","https://openalex.org/W6638493578","https://openalex.org/W6645542846","https://openalex.org/W6651853637","https://openalex.org/W6679996672","https://openalex.org/W6680058235","https://openalex.org/W6681294735"],"related_works":["https://openalex.org/W3177062893","https://openalex.org/W3125143773","https://openalex.org/W3119129187","https://openalex.org/W803550684","https://openalex.org/W2007032764","https://openalex.org/W2483226803","https://openalex.org/W3143937874","https://openalex.org/W2067280619","https://openalex.org/W4251343851","https://openalex.org/W4352977312"],"abstract_inverted_index":{"Supplementary":[0],"data":[1],"are":[2],"available":[3],"at":[4],"Bioinformatics":[5],"online.":[6]},"counts_by_year":[{"year":2024,"cited_by_count":1},{"year":2018,"cited_by_count":1},{"year":2017,"cited_by_count":4},{"year":2015,"cited_by_count":2},{"year":2014,"cited_by_count":1},{"year":2013,"cited_by_count":2},{"year":2012,"cited_by_count":3}],"updated_date":"2025-11-06T03:46:38.306776","created_date":"2025-10-10T00:00:00"}
