{"id":"https://openalex.org/W2147450898","doi":"https://doi.org/10.1093/bioinformatics/btq240","title":"Polynomial algebra of discrete models in systems biology","display_name":"Polynomial algebra of discrete models in systems biology","publication_year":2010,"publication_date":"2010-05-06","ids":{"openalex":"https://openalex.org/W2147450898","doi":"https://doi.org/10.1093/bioinformatics/btq240","mag":"2147450898","pmid":"https://pubmed.ncbi.nlm.nih.gov/20448137"},"language":"en","primary_location":{"id":"doi:10.1093/bioinformatics/btq240","is_oa":true,"landing_page_url":"https://doi.org/10.1093/bioinformatics/btq240","pdf_url":"https://academic.oup.com/bioinformatics/article-pdf/26/13/1637/48852627/bioinformatics_26_13_1637.pdf","source":{"id":"https://openalex.org/S52395412","display_name":"Bioinformatics","issn_l":"1367-4803","issn":["1367-4803","1367-4811"],"is_oa":false,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310311648","host_organization_name":"Oxford University Press","host_organization_lineage":["https://openalex.org/P4310311648","https://openalex.org/P4310311647"],"host_organization_lineage_names":["Oxford University Press","University of Oxford"],"type":"journal"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Bioinformatics","raw_type":"journal-article"},"type":"article","indexed_in":["crossref","doaj","pubmed"],"open_access":{"is_oa":true,"oa_status":"bronze","oa_url":"https://academic.oup.com/bioinformatics/article-pdf/26/13/1637/48852627/bioinformatics_26_13_1637.pdf","any_repository_has_fulltext":false},"authorships":[{"author_position":"first","author":{"id":"https://openalex.org/A5024213252","display_name":"Alan Veliz\u2010Cuba","orcid":"https://orcid.org/0000-0002-9860-8772"},"institutions":[{"id":"https://openalex.org/I859038795","display_name":"Virginia Tech","ror":"https://ror.org/02smfhw86","country_code":"US","type":"education","lineage":["https://openalex.org/I859038795"]},{"id":"https://openalex.org/I181401687","display_name":"American University","ror":"https://ror.org/052w4zt36","country_code":"US","type":"education","lineage":["https://openalex.org/I181401687"]}],"countries":["US"],"is_corresponding":true,"raw_author_name":"Alan Veliz-Cuba","raw_affiliation_strings":["1 Virginia Bioinformatics Institute, Department of Mathematics, Virginia Polytechnic Institute and State University, Blacksburg, VA, USA and 2 Department of Mathematics and Statistics, American University of Sharjah, Sharjah, UAE"],"affiliations":[{"raw_affiliation_string":"1 Virginia Bioinformatics Institute, Department of Mathematics, Virginia Polytechnic Institute and State University, Blacksburg, VA, USA and 2 Department of Mathematics and Statistics, American University of Sharjah, Sharjah, UAE","institution_ids":["https://openalex.org/I859038795","https://openalex.org/I181401687"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5083154892","display_name":"Abdul Salam Jarrah","orcid":"https://orcid.org/0000-0001-6771-2561"},"institutions":[{"id":"https://openalex.org/I181401687","display_name":"American University","ror":"https://ror.org/052w4zt36","country_code":"US","type":"education","lineage":["https://openalex.org/I181401687"]},{"id":"https://openalex.org/I859038795","display_name":"Virginia Tech","ror":"https://ror.org/02smfhw86","country_code":"US","type":"education","lineage":["https://openalex.org/I859038795"]}],"countries":["US"],"is_corresponding":false,"raw_author_name":"Abdul Salam Jarrah","raw_affiliation_strings":["1 Virginia Bioinformatics Institute, Department of Mathematics, Virginia Polytechnic Institute and State University, Blacksburg, VA, USA and 2 Department of Mathematics and Statistics, American University of Sharjah, Sharjah, UAE"],"affiliations":[{"raw_affiliation_string":"1 Virginia Bioinformatics Institute, Department of Mathematics, Virginia Polytechnic Institute and State University, Blacksburg, VA, USA and 2 Department of Mathematics and Statistics, American University of Sharjah, Sharjah, UAE","institution_ids":["https://openalex.org/I859038795","https://openalex.org/I181401687"]}]},{"author_position":"last","author":{"id":"https://openalex.org/A5091010756","display_name":"Reinhard Laubenbacher","orcid":"https://orcid.org/0000-0002-9143-9451"},"institutions":[{"id":"https://openalex.org/I859038795","display_name":"Virginia Tech","ror":"https://ror.org/02smfhw86","country_code":"US","type":"education","lineage":["https://openalex.org/I859038795"]},{"id":"https://openalex.org/I181401687","display_name":"American University","ror":"https://ror.org/052w4zt36","country_code":"US","type":"education","lineage":["https://openalex.org/I181401687"]}],"countries":["US"],"is_corresponding":false,"raw_author_name":"Reinhard Laubenbacher","raw_affiliation_strings":["1 Virginia Bioinformatics Institute, Department of Mathematics, Virginia Polytechnic Institute and State University, Blacksburg, VA, USA and 2 Department of Mathematics and Statistics, American University of Sharjah, Sharjah, UAE"],"affiliations":[{"raw_affiliation_string":"1 Virginia Bioinformatics Institute, Department of Mathematics, Virginia Polytechnic Institute and State University, Blacksburg, VA, USA and 2 Department of Mathematics and Statistics, American University of Sharjah, Sharjah, UAE","institution_ids":["https://openalex.org/I859038795","https://openalex.org/I181401687"]}]}],"institutions":[],"countries_distinct_count":1,"institutions_distinct_count":3,"corresponding_author_ids":["https://openalex.org/A5024213252"],"corresponding_institution_ids":["https://openalex.org/I181401687","https://openalex.org/I859038795"],"apc_list":{"value":3618,"currency":"USD","value_usd":3618},"apc_paid":null,"fwci":5.015,"has_fulltext":true,"cited_by_count":98,"citation_normalized_percentile":{"value":0.96131009,"is_in_top_1_percent":false,"is_in_top_10_percent":true},"cited_by_percentile_year":{"min":94,"max":100},"biblio":{"volume":"26","issue":"13","first_page":"1637","last_page":"1643"},"is_retracted":false,"is_paratext":false,"is_xpac":false,"primary_topic":{"id":"https://openalex.org/T10621","display_name":"Gene Regulatory Network Analysis","score":0.9998000264167786,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},"topics":[{"id":"https://openalex.org/T10621","display_name":"Gene Regulatory Network Analysis","score":0.9998000264167786,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},{"id":"https://openalex.org/T10932","display_name":"Microbial Metabolic Engineering and Bioproduction","score":0.9914000034332275,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},{"id":"https://openalex.org/T10887","display_name":"Bioinformatics and Genomic Networks","score":0.9866999983787537,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}}],"keywords":[{"id":"https://openalex.org/keywords/petri-net","display_name":"Petri net","score":0.7003637552261353},{"id":"https://openalex.org/keywords/variety","display_name":"Variety (cybernetics)","score":0.6647337675094604},{"id":"https://openalex.org/keywords/boolean-network","display_name":"Boolean network","score":0.6477766633033752},{"id":"https://openalex.org/keywords/biological-network","display_name":"Biological network","score":0.5855354070663452},{"id":"https://openalex.org/keywords/theoretical-computer-science","display_name":"Theoretical computer science","score":0.5774034261703491},{"id":"https://openalex.org/keywords/systems-biology","display_name":"Systems biology","score":0.5695548057556152},{"id":"https://openalex.org/keywords/computer-science","display_name":"Computer science","score":0.5628761053085327},{"id":"https://openalex.org/keywords/polynomial","display_name":"Polynomial","score":0.5457538366317749},{"id":"https://openalex.org/keywords/dynamical-systems-theory","display_name":"Dynamical systems theory","score":0.4875618815422058},{"id":"https://openalex.org/keywords/gene-regulatory-network","display_name":"Gene regulatory network","score":0.4489700496196747},{"id":"https://openalex.org/keywords/boolean-algebra","display_name":"Boolean algebra","score":0.41769498586654663},{"id":"https://openalex.org/keywords/algebra-over-a-field","display_name":"Algebra over a field","score":0.40953391790390015},{"id":"https://openalex.org/keywords/mathematics","display_name":"Mathematics","score":0.2994379997253418},{"id":"https://openalex.org/keywords/algorithm","display_name":"Algorithm","score":0.28624117374420166},{"id":"https://openalex.org/keywords/boolean-function","display_name":"Boolean function","score":0.2513606548309326},{"id":"https://openalex.org/keywords/artificial-intelligence","display_name":"Artificial intelligence","score":0.22607919573783875},{"id":"https://openalex.org/keywords/computational-biology","display_name":"Computational biology","score":0.16432568430900574},{"id":"https://openalex.org/keywords/biology","display_name":"Biology","score":0.13045179843902588},{"id":"https://openalex.org/keywords/pure-mathematics","display_name":"Pure mathematics","score":0.1164155900478363}],"concepts":[{"id":"https://openalex.org/C38677869","wikidata":"https://www.wikidata.org/wiki/Q724168","display_name":"Petri net","level":2,"score":0.7003637552261353},{"id":"https://openalex.org/C136197465","wikidata":"https://www.wikidata.org/wiki/Q1729295","display_name":"Variety (cybernetics)","level":2,"score":0.6647337675094604},{"id":"https://openalex.org/C134444547","wikidata":"https://www.wikidata.org/wiki/Q585230","display_name":"Boolean network","level":3,"score":0.6477766633033752},{"id":"https://openalex.org/C28225019","wikidata":"https://www.wikidata.org/wiki/Q4915005","display_name":"Biological network","level":2,"score":0.5855354070663452},{"id":"https://openalex.org/C80444323","wikidata":"https://www.wikidata.org/wiki/Q2878974","display_name":"Theoretical computer science","level":1,"score":0.5774034261703491},{"id":"https://openalex.org/C152662350","wikidata":"https://www.wikidata.org/wiki/Q815297","display_name":"Systems biology","level":2,"score":0.5695548057556152},{"id":"https://openalex.org/C41008148","wikidata":"https://www.wikidata.org/wiki/Q21198","display_name":"Computer science","level":0,"score":0.5628761053085327},{"id":"https://openalex.org/C90119067","wikidata":"https://www.wikidata.org/wiki/Q43260","display_name":"Polynomial","level":2,"score":0.5457538366317749},{"id":"https://openalex.org/C79379906","wikidata":"https://www.wikidata.org/wiki/Q3174497","display_name":"Dynamical systems theory","level":2,"score":0.4875618815422058},{"id":"https://openalex.org/C67339327","wikidata":"https://www.wikidata.org/wiki/Q1502576","display_name":"Gene regulatory network","level":4,"score":0.4489700496196747},{"id":"https://openalex.org/C39685927","wikidata":"https://www.wikidata.org/wiki/Q173183","display_name":"Boolean algebra","level":2,"score":0.41769498586654663},{"id":"https://openalex.org/C136119220","wikidata":"https://www.wikidata.org/wiki/Q1000660","display_name":"Algebra over a field","level":2,"score":0.40953391790390015},{"id":"https://openalex.org/C33923547","wikidata":"https://www.wikidata.org/wiki/Q395","display_name":"Mathematics","level":0,"score":0.2994379997253418},{"id":"https://openalex.org/C11413529","wikidata":"https://www.wikidata.org/wiki/Q8366","display_name":"Algorithm","level":1,"score":0.28624117374420166},{"id":"https://openalex.org/C187455244","wikidata":"https://www.wikidata.org/wiki/Q942353","display_name":"Boolean function","level":2,"score":0.2513606548309326},{"id":"https://openalex.org/C154945302","wikidata":"https://www.wikidata.org/wiki/Q11660","display_name":"Artificial intelligence","level":1,"score":0.22607919573783875},{"id":"https://openalex.org/C70721500","wikidata":"https://www.wikidata.org/wiki/Q177005","display_name":"Computational biology","level":1,"score":0.16432568430900574},{"id":"https://openalex.org/C86803240","wikidata":"https://www.wikidata.org/wiki/Q420","display_name":"Biology","level":0,"score":0.13045179843902588},{"id":"https://openalex.org/C202444582","wikidata":"https://www.wikidata.org/wiki/Q837863","display_name":"Pure mathematics","level":1,"score":0.1164155900478363},{"id":"https://openalex.org/C134306372","wikidata":"https://www.wikidata.org/wiki/Q7754","display_name":"Mathematical analysis","level":1,"score":0.0},{"id":"https://openalex.org/C121332964","wikidata":"https://www.wikidata.org/wiki/Q413","display_name":"Physics","level":0,"score":0.0},{"id":"https://openalex.org/C55493867","wikidata":"https://www.wikidata.org/wiki/Q7094","display_name":"Biochemistry","level":1,"score":0.0},{"id":"https://openalex.org/C114614502","wikidata":"https://www.wikidata.org/wiki/Q76592","display_name":"Combinatorics","level":1,"score":0.0},{"id":"https://openalex.org/C104317684","wikidata":"https://www.wikidata.org/wiki/Q7187","display_name":"Gene","level":2,"score":0.0},{"id":"https://openalex.org/C62520636","wikidata":"https://www.wikidata.org/wiki/Q944","display_name":"Quantum mechanics","level":1,"score":0.0},{"id":"https://openalex.org/C150194340","wikidata":"https://www.wikidata.org/wiki/Q26972","display_name":"Gene expression","level":3,"score":0.0}],"mesh":[{"descriptor_ui":"D000465","descriptor_name":"Algorithms","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D000465","descriptor_name":"Algorithms","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D000465","descriptor_name":"Algorithms","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D008954","descriptor_name":"Models, Biological","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D008954","descriptor_name":"Models, Biological","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D008954","descriptor_name":"Models, Biological","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D015233","descriptor_name":"Models, Statistical","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D015233","descriptor_name":"Models, Statistical","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D015233","descriptor_name":"Models, Statistical","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D049490","descriptor_name":"Systems Biology","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D049490","descriptor_name":"Systems Biology","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D049490","descriptor_name":"Systems Biology","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true}],"locations_count":2,"locations":[{"id":"doi:10.1093/bioinformatics/btq240","is_oa":true,"landing_page_url":"https://doi.org/10.1093/bioinformatics/btq240","pdf_url":"https://academic.oup.com/bioinformatics/article-pdf/26/13/1637/48852627/bioinformatics_26_13_1637.pdf","source":{"id":"https://openalex.org/S52395412","display_name":"Bioinformatics","issn_l":"1367-4803","issn":["1367-4803","1367-4811"],"is_oa":false,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310311648","host_organization_name":"Oxford University Press","host_organization_lineage":["https://openalex.org/P4310311648","https://openalex.org/P4310311647"],"host_organization_lineage_names":["Oxford University Press","University of Oxford"],"type":"journal"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Bioinformatics","raw_type":"journal-article"},{"id":"pmid:20448137","is_oa":false,"landing_page_url":"https://pubmed.ncbi.nlm.nih.gov/20448137","pdf_url":null,"source":{"id":"https://openalex.org/S4306525036","display_name":"PubMed","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I1299303238","host_organization_name":"National Institutes of Health","host_organization_lineage":["https://openalex.org/I1299303238"],"host_organization_lineage_names":[],"type":"repository"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Bioinformatics (Oxford, England)","raw_type":null}],"best_oa_location":{"id":"doi:10.1093/bioinformatics/btq240","is_oa":true,"landing_page_url":"https://doi.org/10.1093/bioinformatics/btq240","pdf_url":"https://academic.oup.com/bioinformatics/article-pdf/26/13/1637/48852627/bioinformatics_26_13_1637.pdf","source":{"id":"https://openalex.org/S52395412","display_name":"Bioinformatics","issn_l":"1367-4803","issn":["1367-4803","1367-4811"],"is_oa":false,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310311648","host_organization_name":"Oxford University Press","host_organization_lineage":["https://openalex.org/P4310311648","https://openalex.org/P4310311647"],"host_organization_lineage_names":["Oxford University Press","University of Oxford"],"type":"journal"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Bioinformatics","raw_type":"journal-article"},"sustainable_development_goals":[],"awards":[],"funders":[],"has_content":{"grobid_xml":true,"pdf":true},"content_urls":{"pdf":"https://content.openalex.org/works/W2147450898.pdf","grobid_xml":"https://content.openalex.org/works/W2147450898.grobid-xml"},"referenced_works_count":53,"referenced_works":["https://openalex.org/W1493523706","https://openalex.org/W1514247755","https://openalex.org/W1519328443","https://openalex.org/W1530386720","https://openalex.org/W1606860353","https://openalex.org/W1776634096","https://openalex.org/W1807981783","https://openalex.org/W1820365645","https://openalex.org/W1886819223","https://openalex.org/W1989431662","https://openalex.org/W1990566373","https://openalex.org/W1993346355","https://openalex.org/W1994094326","https://openalex.org/W2002880495","https://openalex.org/W2005783020","https://openalex.org/W2014566660","https://openalex.org/W2029338813","https://openalex.org/W2043806924","https://openalex.org/W2046538693","https://openalex.org/W2047649079","https://openalex.org/W2048013262","https://openalex.org/W2053961182","https://openalex.org/W2065546165","https://openalex.org/W2079583491","https://openalex.org/W2088488298","https://openalex.org/W2092755129","https://openalex.org/W2094524776","https://openalex.org/W2097682802","https://openalex.org/W2099964161","https://openalex.org/W2108654339","https://openalex.org/W2110012716","https://openalex.org/W2114518254","https://openalex.org/W2122164576","https://openalex.org/W2132935366","https://openalex.org/W2134784304","https://openalex.org/W2136559804","https://openalex.org/W2141368462","https://openalex.org/W2144501202","https://openalex.org/W2148357359","https://openalex.org/W2151852639","https://openalex.org/W2156841851","https://openalex.org/W2160196028","https://openalex.org/W2163175103","https://openalex.org/W2167334954","https://openalex.org/W2171166218","https://openalex.org/W2964149642","https://openalex.org/W4285719527","https://openalex.org/W4299438414","https://openalex.org/W6629616832","https://openalex.org/W6630877999","https://openalex.org/W6631012452","https://openalex.org/W6631997483","https://openalex.org/W6638035080"],"related_works":["https://openalex.org/W2108120899","https://openalex.org/W2402814600","https://openalex.org/W2794960257","https://openalex.org/W2330768201","https://openalex.org/W1422717320","https://openalex.org/W2158714033","https://openalex.org/W2349909726","https://openalex.org/W2128085946","https://openalex.org/W2063978705","https://openalex.org/W2156091616"],"abstract_inverted_index":{"Supplementary":[0],"data":[1],"are":[2],"available":[3],"at":[4],"Bioinformatics":[5],"online.":[6]},"counts_by_year":[{"year":2026,"cited_by_count":4},{"year":2024,"cited_by_count":3},{"year":2023,"cited_by_count":2},{"year":2022,"cited_by_count":3},{"year":2021,"cited_by_count":3},{"year":2020,"cited_by_count":7},{"year":2019,"cited_by_count":4},{"year":2018,"cited_by_count":4},{"year":2017,"cited_by_count":7},{"year":2016,"cited_by_count":5},{"year":2015,"cited_by_count":9},{"year":2014,"cited_by_count":10},{"year":2013,"cited_by_count":9},{"year":2012,"cited_by_count":7}],"updated_date":"2026-04-09T08:11:56.329763","created_date":"2025-10-10T00:00:00"}
