{"id":"https://openalex.org/W2167868554","doi":"https://doi.org/10.1093/bioinformatics/btq233","title":"TAPIR, a web server for the prediction of plant microRNA targets, including target mimics","display_name":"TAPIR, a web server for the prediction of plant microRNA targets, including target mimics","publication_year":2010,"publication_date":"2010-04-28","ids":{"openalex":"https://openalex.org/W2167868554","doi":"https://doi.org/10.1093/bioinformatics/btq233","mag":"2167868554","pmid":"https://pubmed.ncbi.nlm.nih.gov/20430753"},"language":"en","primary_location":{"id":"doi:10.1093/bioinformatics/btq233","is_oa":true,"landing_page_url":"https://doi.org/10.1093/bioinformatics/btq233","pdf_url":"https://academic.oup.com/bioinformatics/article-pdf/26/12/1566/48858447/bioinformatics_26_12_1566.pdf","source":{"id":"https://openalex.org/S52395412","display_name":"Bioinformatics","issn_l":"1367-4803","issn":["1367-4803","1367-4811"],"is_oa":false,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310311648","host_organization_name":"Oxford University Press","host_organization_lineage":["https://openalex.org/P4310311648","https://openalex.org/P4310311647"],"host_organization_lineage_names":["Oxford University Press","University of Oxford"],"type":"journal"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Bioinformatics","raw_type":"journal-article"},"type":"article","indexed_in":["crossref","doaj","pubmed"],"open_access":{"is_oa":true,"oa_status":"bronze","oa_url":"https://academic.oup.com/bioinformatics/article-pdf/26/12/1566/48858447/bioinformatics_26_12_1566.pdf","any_repository_has_fulltext":true},"authorships":[{"author_position":"first","author":{"id":"https://openalex.org/A5031779274","display_name":"\u00c9ric Bonnet","orcid":"https://orcid.org/0000-0002-8468-2867"},"institutions":[{"id":"https://openalex.org/I32597200","display_name":"Ghent University","ror":"https://ror.org/00cv9y106","country_code":"BE","type":"education","lineage":["https://openalex.org/I32597200"]},{"id":"https://openalex.org/I4210098178","display_name":"VIB-UGent Center for Plant Systems Biology","ror":"https://ror.org/01qnqmc89","country_code":"BE","type":"facility","lineage":["https://openalex.org/I2802017950","https://openalex.org/I32597200","https://openalex.org/I4210098178"]}],"countries":["BE"],"is_corresponding":true,"raw_author_name":"Eric Bonnet","raw_affiliation_strings":["1 Department of Plant Systems Biology, VIB and 2 Department of Molecular Genetics, Ghent University, Technologiepark 927, B-9052 Gent, Belgium"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"1 Department of Plant Systems Biology, VIB and 2 Department of Molecular Genetics, Ghent University, Technologiepark 927, B-9052 Gent, Belgium","institution_ids":["https://openalex.org/I4210098178","https://openalex.org/I32597200"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5086358231","display_name":"Ying He","orcid":"https://orcid.org/0000-0002-9592-7727"},"institutions":[{"id":"https://openalex.org/I32597200","display_name":"Ghent University","ror":"https://ror.org/00cv9y106","country_code":"BE","type":"education","lineage":["https://openalex.org/I32597200"]},{"id":"https://openalex.org/I4210098178","display_name":"VIB-UGent Center for Plant Systems Biology","ror":"https://ror.org/01qnqmc89","country_code":"BE","type":"facility","lineage":["https://openalex.org/I2802017950","https://openalex.org/I32597200","https://openalex.org/I4210098178"]}],"countries":["BE"],"is_corresponding":false,"raw_author_name":"Ying He","raw_affiliation_strings":["1 Department of Plant Systems Biology, VIB and 2 Department of Molecular Genetics, Ghent University, Technologiepark 927, B-9052 Gent, Belgium"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"1 Department of Plant Systems Biology, VIB and 2 Department of Molecular Genetics, Ghent University, Technologiepark 927, B-9052 Gent, Belgium","institution_ids":["https://openalex.org/I4210098178","https://openalex.org/I32597200"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5029752913","display_name":"Kenny Billiau","orcid":null},"institutions":[{"id":"https://openalex.org/I32597200","display_name":"Ghent University","ror":"https://ror.org/00cv9y106","country_code":"BE","type":"education","lineage":["https://openalex.org/I32597200"]},{"id":"https://openalex.org/I4210098178","display_name":"VIB-UGent Center for Plant Systems Biology","ror":"https://ror.org/01qnqmc89","country_code":"BE","type":"facility","lineage":["https://openalex.org/I2802017950","https://openalex.org/I32597200","https://openalex.org/I4210098178"]}],"countries":["BE"],"is_corresponding":false,"raw_author_name":"Kenny Billiau","raw_affiliation_strings":["1 Department of Plant Systems Biology, VIB and 2 Department of Molecular Genetics, Ghent University, Technologiepark 927, B-9052 Gent, Belgium"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"1 Department of Plant Systems Biology, VIB and 2 Department of Molecular Genetics, Ghent University, Technologiepark 927, B-9052 Gent, Belgium","institution_ids":["https://openalex.org/I4210098178","https://openalex.org/I32597200"]}]},{"author_position":"last","author":{"id":"https://openalex.org/A5070738091","display_name":"Yves Van de Peer","orcid":"https://orcid.org/0000-0003-4327-3730"},"institutions":[{"id":"https://openalex.org/I4210098178","display_name":"VIB-UGent Center for Plant Systems Biology","ror":"https://ror.org/01qnqmc89","country_code":"BE","type":"facility","lineage":["https://openalex.org/I2802017950","https://openalex.org/I32597200","https://openalex.org/I4210098178"]},{"id":"https://openalex.org/I32597200","display_name":"Ghent University","ror":"https://ror.org/00cv9y106","country_code":"BE","type":"education","lineage":["https://openalex.org/I32597200"]}],"countries":["BE"],"is_corresponding":false,"raw_author_name":"Yves Van de Peer","raw_affiliation_strings":["1 Department of Plant Systems Biology, VIB and 2 Department of Molecular Genetics, Ghent University, Technologiepark 927, B-9052 Gent, Belgium"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"1 Department of Plant Systems Biology, VIB and 2 Department of Molecular Genetics, Ghent University, Technologiepark 927, B-9052 Gent, Belgium","institution_ids":["https://openalex.org/I4210098178","https://openalex.org/I32597200"]}]}],"institutions":[],"countries_distinct_count":1,"institutions_distinct_count":4,"corresponding_author_ids":["https://openalex.org/A5031779274"],"corresponding_institution_ids":["https://openalex.org/I32597200","https://openalex.org/I4210098178"],"apc_list":{"value":3618,"currency":"USD","value_usd":3618},"apc_paid":null,"fwci":14.0973,"has_fulltext":false,"cited_by_count":396,"citation_normalized_percentile":{"value":0.98903252,"is_in_top_1_percent":false,"is_in_top_10_percent":true},"cited_by_percentile_year":{"min":99,"max":100},"biblio":{"volume":"26","issue":"12","first_page":"1566","last_page":"1568"},"is_retracted":false,"is_paratext":false,"is_xpac":false,"primary_topic":{"id":"https://openalex.org/T10184","display_name":"Plant Molecular Biology Research","score":0.9995999932289124,"subfield":{"id":"https://openalex.org/subfields/1110","display_name":"Plant Science"},"field":{"id":"https://openalex.org/fields/11","display_name":"Agricultural and Biological Sciences"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},"topics":[{"id":"https://openalex.org/T10184","display_name":"Plant Molecular Biology Research","score":0.9995999932289124,"subfield":{"id":"https://openalex.org/subfields/1110","display_name":"Plant Science"},"field":{"id":"https://openalex.org/fields/11","display_name":"Agricultural and Biological Sciences"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},{"id":"https://openalex.org/T10015","display_name":"Genomics and Phylogenetic Studies","score":0.9979000091552734,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},{"id":"https://openalex.org/T11482","display_name":"RNA modifications and cancer","score":0.9977999925613403,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}}],"keywords":[{"id":"https://openalex.org/keywords/microrna","display_name":"microRNA","score":0.739648163318634},{"id":"https://openalex.org/keywords/web-server","display_name":"Web server","score":0.6350482702255249},{"id":"https://openalex.org/keywords/computer-science","display_name":"Computer science","score":0.5907199382781982},{"id":"https://openalex.org/keywords/duplex","display_name":"Duplex (building)","score":0.5351536870002747},{"id":"https://openalex.org/keywords/r-package","display_name":"R package","score":0.44561317563056946},{"id":"https://openalex.org/keywords/web-site","display_name":"Web site","score":0.41896921396255493},{"id":"https://openalex.org/keywords/computational-biology","display_name":"Computational biology","score":0.3966269791126251},{"id":"https://openalex.org/keywords/bioinformatics","display_name":"Bioinformatics","score":0.38743001222610474},{"id":"https://openalex.org/keywords/data-mining","display_name":"Data mining","score":0.35773950815200806},{"id":"https://openalex.org/keywords/biology","display_name":"Biology","score":0.34096527099609375},{"id":"https://openalex.org/keywords/the-internet","display_name":"The Internet","score":0.28596124053001404},{"id":"https://openalex.org/keywords/world-wide-web","display_name":"World Wide Web","score":0.27166908979415894},{"id":"https://openalex.org/keywords/genetics","display_name":"Genetics","score":0.11465513706207275},{"id":"https://openalex.org/keywords/gene","display_name":"Gene","score":0.09945234656333923},{"id":"https://openalex.org/keywords/computational-science","display_name":"Computational science","score":0.062112778425216675}],"concepts":[{"id":"https://openalex.org/C145059251","wikidata":"https://www.wikidata.org/wiki/Q310899","display_name":"microRNA","level":3,"score":0.739648163318634},{"id":"https://openalex.org/C11392498","wikidata":"https://www.wikidata.org/wiki/Q11288","display_name":"Web server","level":3,"score":0.6350482702255249},{"id":"https://openalex.org/C41008148","wikidata":"https://www.wikidata.org/wiki/Q21198","display_name":"Computer science","level":0,"score":0.5907199382781982},{"id":"https://openalex.org/C99611785","wikidata":"https://www.wikidata.org/wiki/Q6453233","display_name":"Duplex (building)","level":3,"score":0.5351536870002747},{"id":"https://openalex.org/C2984074130","wikidata":"https://www.wikidata.org/wiki/Q73539779","display_name":"R package","level":2,"score":0.44561317563056946},{"id":"https://openalex.org/C2984519610","wikidata":"https://www.wikidata.org/wiki/Q35127","display_name":"Web site","level":3,"score":0.41896921396255493},{"id":"https://openalex.org/C70721500","wikidata":"https://www.wikidata.org/wiki/Q177005","display_name":"Computational biology","level":1,"score":0.3966269791126251},{"id":"https://openalex.org/C60644358","wikidata":"https://www.wikidata.org/wiki/Q128570","display_name":"Bioinformatics","level":1,"score":0.38743001222610474},{"id":"https://openalex.org/C124101348","wikidata":"https://www.wikidata.org/wiki/Q172491","display_name":"Data mining","level":1,"score":0.35773950815200806},{"id":"https://openalex.org/C86803240","wikidata":"https://www.wikidata.org/wiki/Q420","display_name":"Biology","level":0,"score":0.34096527099609375},{"id":"https://openalex.org/C110875604","wikidata":"https://www.wikidata.org/wiki/Q75","display_name":"The Internet","level":2,"score":0.28596124053001404},{"id":"https://openalex.org/C136764020","wikidata":"https://www.wikidata.org/wiki/Q466","display_name":"World Wide Web","level":1,"score":0.27166908979415894},{"id":"https://openalex.org/C54355233","wikidata":"https://www.wikidata.org/wiki/Q7162","display_name":"Genetics","level":1,"score":0.11465513706207275},{"id":"https://openalex.org/C104317684","wikidata":"https://www.wikidata.org/wiki/Q7187","display_name":"Gene","level":2,"score":0.09945234656333923},{"id":"https://openalex.org/C459310","wikidata":"https://www.wikidata.org/wiki/Q117801","display_name":"Computational science","level":1,"score":0.062112778425216675},{"id":"https://openalex.org/C552990157","wikidata":"https://www.wikidata.org/wiki/Q7430","display_name":"DNA","level":2,"score":0.0}],"mesh":[{"descriptor_ui":"D012984","descriptor_name":"Software","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D012984","descriptor_name":"Software","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D012984","descriptor_name":"Software","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D017423","descriptor_name":"Sequence Analysis, RNA","qualifier_ui":"Q000379","qualifier_name":"methods","is_major_topic":false},{"descriptor_ui":"D017423","descriptor_name":"Sequence Analysis, RNA","qualifier_ui":"Q000379","qualifier_name":"methods","is_major_topic":false},{"descriptor_ui":"D017423","descriptor_name":"Sequence Analysis, RNA","qualifier_ui":"Q000379","qualifier_name":"methods","is_major_topic":false},{"descriptor_ui":"D018749","descriptor_name":"RNA, Plant","qualifier_ui":"Q000737","qualifier_name":"chemistry","is_major_topic":false},{"descriptor_ui":"D018749","descriptor_name":"RNA, Plant","qualifier_ui":"Q000737","qualifier_name":"chemistry","is_major_topic":false},{"descriptor_ui":"D018749","descriptor_name":"RNA, Plant","qualifier_ui":"Q000737","qualifier_name":"chemistry","is_major_topic":false},{"descriptor_ui":"D020407","descriptor_name":"Internet","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D020407","descriptor_name":"Internet","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D020407","descriptor_name":"Internet","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D032701","descriptor_name":"Biomimetics","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D032701","descriptor_name":"Biomimetics","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D032701","descriptor_name":"Biomimetics","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D035683","descriptor_name":"MicroRNAs","qualifier_ui":"Q000737","qualifier_name":"chemistry","is_major_topic":false},{"descriptor_ui":"D035683","descriptor_name":"MicroRNAs","qualifier_ui":"Q000737","qualifier_name":"chemistry","is_major_topic":false},{"descriptor_ui":"D035683","descriptor_name":"MicroRNAs","qualifier_ui":"Q000737","qualifier_name":"chemistry","is_major_topic":false}],"locations_count":4,"locations":[{"id":"doi:10.1093/bioinformatics/btq233","is_oa":true,"landing_page_url":"https://doi.org/10.1093/bioinformatics/btq233","pdf_url":"https://academic.oup.com/bioinformatics/article-pdf/26/12/1566/48858447/bioinformatics_26_12_1566.pdf","source":{"id":"https://openalex.org/S52395412","display_name":"Bioinformatics","issn_l":"1367-4803","issn":["1367-4803","1367-4811"],"is_oa":false,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310311648","host_organization_name":"Oxford University Press","host_organization_lineage":["https://openalex.org/P4310311648","https://openalex.org/P4310311647"],"host_organization_lineage_names":["Oxford University Press","University of Oxford"],"type":"journal"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Bioinformatics","raw_type":"journal-article"},{"id":"pmid:20430753","is_oa":false,"landing_page_url":"https://pubmed.ncbi.nlm.nih.gov/20430753","pdf_url":null,"source":{"id":"https://openalex.org/S4306525036","display_name":"PubMed","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I1299303238","host_organization_name":"National Institutes of Health","host_organization_lineage":["https://openalex.org/I1299303238"],"host_organization_lineage_names":[],"type":"repository"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Bioinformatics (Oxford, England)","raw_type":null},{"id":"pmh:oai:HAL:cea-04497258v1","is_oa":true,"landing_page_url":"https://cea.hal.science/cea-04497258","pdf_url":null,"source":{"id":"https://openalex.org/S4406922466","display_name":"SPIRE - Sciences Po Institutional REpository","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":null,"host_organization_name":null,"host_organization_lineage":[],"host_organization_lineage_names":[],"type":"repository"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":"https://academic.oup.com/bioinformatics/article/26/12/1566/287433?login=true","raw_type":"Journal articles"},{"id":"pmh:oai:archive.ugent.be:1008305","is_oa":false,"landing_page_url":"https://biblio.ugent.be/publication/1008305","pdf_url":null,"source":{"id":"https://openalex.org/S4306400478","display_name":"Ghent University Academic Bibliography (Ghent University)","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I32597200","host_organization_name":"Ghent University","host_organization_lineage":["https://openalex.org/I32597200"],"host_organization_lineage_names":[],"type":"repository"},"license":null,"license_id":null,"version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":"ISSN: 1367-4803","raw_type":"info:eu-repo/semantics/publishedVersion"}],"best_oa_location":{"id":"doi:10.1093/bioinformatics/btq233","is_oa":true,"landing_page_url":"https://doi.org/10.1093/bioinformatics/btq233","pdf_url":"https://academic.oup.com/bioinformatics/article-pdf/26/12/1566/48858447/bioinformatics_26_12_1566.pdf","source":{"id":"https://openalex.org/S52395412","display_name":"Bioinformatics","issn_l":"1367-4803","issn":["1367-4803","1367-4811"],"is_oa":false,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310311648","host_organization_name":"Oxford University Press","host_organization_lineage":["https://openalex.org/P4310311648","https://openalex.org/P4310311647"],"host_organization_lineage_names":["Oxford University Press","University of Oxford"],"type":"journal"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Bioinformatics","raw_type":"journal-article"},"sustainable_development_goals":[],"awards":[],"funders":[],"has_content":{"pdf":true,"grobid_xml":true},"content_urls":{"pdf":"https://content.openalex.org/works/W2167868554.pdf","grobid_xml":"https://content.openalex.org/works/W2167868554.grobid-xml"},"referenced_works_count":21,"referenced_works":["https://openalex.org/W1543796220","https://openalex.org/W1932434485","https://openalex.org/W1967543716","https://openalex.org/W1982660543","https://openalex.org/W1992873592","https://openalex.org/W1995073275","https://openalex.org/W2011518477","https://openalex.org/W2033338351","https://openalex.org/W2070571588","https://openalex.org/W2094253263","https://openalex.org/W2118771503","https://openalex.org/W2128034264","https://openalex.org/W2135015580","https://openalex.org/W2137523780","https://openalex.org/W2139582953","https://openalex.org/W2154085311","https://openalex.org/W2160069833","https://openalex.org/W2162170048","https://openalex.org/W2169416219","https://openalex.org/W4293430819","https://openalex.org/W6842428047"],"related_works":["https://openalex.org/W2092406346","https://openalex.org/W2737319532","https://openalex.org/W3151405604","https://openalex.org/W4252337189","https://openalex.org/W2565797512","https://openalex.org/W3002947890","https://openalex.org/W2050308539","https://openalex.org/W2793648706","https://openalex.org/W2019096591","https://openalex.org/W3032012916"],"abstract_inverted_index":{"Supplementary":[0],"data":[1],"are":[2],"available":[3],"at":[4],"Bioinformatics":[5],"online.":[6]},"counts_by_year":[{"year":2026,"cited_by_count":3},{"year":2025,"cited_by_count":24},{"year":2024,"cited_by_count":25},{"year":2023,"cited_by_count":41},{"year":2022,"cited_by_count":38},{"year":2021,"cited_by_count":58},{"year":2020,"cited_by_count":30},{"year":2019,"cited_by_count":31},{"year":2018,"cited_by_count":25},{"year":2017,"cited_by_count":29},{"year":2016,"cited_by_count":18},{"year":2015,"cited_by_count":26},{"year":2014,"cited_by_count":14},{"year":2013,"cited_by_count":7},{"year":2012,"cited_by_count":16}],"updated_date":"2026-04-25T08:17:42.794288","created_date":"2025-10-10T00:00:00"}
