{"id":"https://openalex.org/W2139736670","doi":"https://doi.org/10.1093/bioinformatics/btq228","title":"DendroPy: a Python library for phylogenetic computing","display_name":"DendroPy: a Python library for phylogenetic computing","publication_year":2010,"publication_date":"2010-04-25","ids":{"openalex":"https://openalex.org/W2139736670","doi":"https://doi.org/10.1093/bioinformatics/btq228","mag":"2139736670","pmid":"https://pubmed.ncbi.nlm.nih.gov/20421198"},"language":"en","primary_location":{"id":"doi:10.1093/bioinformatics/btq228","is_oa":true,"landing_page_url":"https://doi.org/10.1093/bioinformatics/btq228","pdf_url":"https://academic.oup.com/bioinformatics/article-pdf/26/12/1569/48858541/bioinformatics_26_12_1569.pdf","source":{"id":"https://openalex.org/S52395412","display_name":"Bioinformatics","issn_l":"1367-4803","issn":["1367-4803","1367-4811"],"is_oa":false,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310311648","host_organization_name":"Oxford University Press","host_organization_lineage":["https://openalex.org/P4310311648","https://openalex.org/P4310311647"],"host_organization_lineage_names":["Oxford University Press","University of Oxford"],"type":"journal"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Bioinformatics","raw_type":"journal-article"},"type":"article","indexed_in":["crossref","doaj","pubmed"],"open_access":{"is_oa":true,"oa_status":"bronze","oa_url":"https://academic.oup.com/bioinformatics/article-pdf/26/12/1569/48858541/bioinformatics_26_12_1569.pdf","any_repository_has_fulltext":false},"authorships":[{"author_position":"first","author":{"id":"https://openalex.org/A5008542908","display_name":"Jeet Sukumaran","orcid":"https://orcid.org/0000-0002-9222-9608"},"institutions":[{"id":"https://openalex.org/I146416000","display_name":"University of Kansas","ror":"https://ror.org/001tmjg57","country_code":"US","type":"education","lineage":["https://openalex.org/I146416000"]}],"countries":["US"],"is_corresponding":true,"raw_author_name":"Jeet Sukumaran","raw_affiliation_strings":["Department of Ecology and Evolutionary Biology, University of Kansas, Lawrence, USA"],"affiliations":[{"raw_affiliation_string":"Department of Ecology and Evolutionary Biology, University of Kansas, Lawrence, USA","institution_ids":["https://openalex.org/I146416000"]}]},{"author_position":"last","author":{"id":"https://openalex.org/A5021006859","display_name":"Mark T. Holder","orcid":"https://orcid.org/0000-0001-5575-0536"},"institutions":[{"id":"https://openalex.org/I146416000","display_name":"University of Kansas","ror":"https://ror.org/001tmjg57","country_code":"US","type":"education","lineage":["https://openalex.org/I146416000"]}],"countries":["US"],"is_corresponding":false,"raw_author_name":"Mark T. Holder","raw_affiliation_strings":["Department of Ecology and Evolutionary Biology, University of Kansas, Lawrence, USA"],"affiliations":[{"raw_affiliation_string":"Department of Ecology and Evolutionary Biology, University of Kansas, Lawrence, USA","institution_ids":["https://openalex.org/I146416000"]}]}],"institutions":[],"countries_distinct_count":1,"institutions_distinct_count":2,"corresponding_author_ids":["https://openalex.org/A5008542908"],"corresponding_institution_ids":["https://openalex.org/I146416000"],"apc_list":{"value":3618,"currency":"USD","value_usd":3618},"apc_paid":null,"fwci":21.0163,"has_fulltext":true,"cited_by_count":1736,"citation_normalized_percentile":{"value":0.9969742,"is_in_top_1_percent":true,"is_in_top_10_percent":true},"cited_by_percentile_year":{"min":99,"max":100},"biblio":{"volume":"26","issue":"12","first_page":"1569","last_page":"1571"},"is_retracted":false,"is_paratext":false,"is_xpac":false,"primary_topic":{"id":"https://openalex.org/T10015","display_name":"Genomics and Phylogenetic Studies","score":0.9991000294685364,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},"topics":[{"id":"https://openalex.org/T10015","display_name":"Genomics and Phylogenetic Studies","score":0.9991000294685364,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},{"id":"https://openalex.org/T11354","display_name":"Evolution and Paleontology Studies","score":0.9984999895095825,"subfield":{"id":"https://openalex.org/subfields/1911","display_name":"Paleontology"},"field":{"id":"https://openalex.org/fields/19","display_name":"Earth and Planetary Sciences"},"domain":{"id":"https://openalex.org/domains/3","display_name":"Physical Sciences"}},{"id":"https://openalex.org/T10012","display_name":"Genetic diversity and population structure","score":0.9740999937057495,"subfield":{"id":"https://openalex.org/subfields/1311","display_name":"Genetics"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}}],"keywords":[{"id":"https://openalex.org/keywords/python","display_name":"Python (programming language)","score":0.9301283359527588},{"id":"https://openalex.org/keywords/computer-science","display_name":"Computer science","score":0.7851922512054443},{"id":"https://openalex.org/keywords/phylogenetic-tree","display_name":"Phylogenetic tree","score":0.6980276107788086},{"id":"https://openalex.org/keywords/coalescent-theory","display_name":"Coalescent theory","score":0.6128352284431458},{"id":"https://openalex.org/keywords/programming-language","display_name":"Programming language","score":0.6121335029602051},{"id":"https://openalex.org/keywords/pointer","display_name":"Pointer (user interface)","score":0.5028676390647888},{"id":"https://openalex.org/keywords/java","display_name":"Java","score":0.46284979581832886},{"id":"https://openalex.org/keywords/source-code","display_name":"Source code","score":0.4499243497848511},{"id":"https://openalex.org/keywords/theoretical-computer-science","display_name":"Theoretical computer science","score":0.3429103493690491},{"id":"https://openalex.org/keywords/biology","display_name":"Biology","score":0.1830054223537445},{"id":"https://openalex.org/keywords/artificial-intelligence","display_name":"Artificial intelligence","score":0.1641674041748047}],"concepts":[{"id":"https://openalex.org/C519991488","wikidata":"https://www.wikidata.org/wiki/Q28865","display_name":"Python (programming language)","level":2,"score":0.9301283359527588},{"id":"https://openalex.org/C41008148","wikidata":"https://www.wikidata.org/wiki/Q21198","display_name":"Computer science","level":0,"score":0.7851922512054443},{"id":"https://openalex.org/C193252679","wikidata":"https://www.wikidata.org/wiki/Q242125","display_name":"Phylogenetic tree","level":3,"score":0.6980276107788086},{"id":"https://openalex.org/C2554327","wikidata":"https://www.wikidata.org/wiki/Q2698599","display_name":"Coalescent theory","level":4,"score":0.6128352284431458},{"id":"https://openalex.org/C199360897","wikidata":"https://www.wikidata.org/wiki/Q9143","display_name":"Programming language","level":1,"score":0.6121335029602051},{"id":"https://openalex.org/C150202949","wikidata":"https://www.wikidata.org/wiki/Q107602","display_name":"Pointer (user interface)","level":2,"score":0.5028676390647888},{"id":"https://openalex.org/C548217200","wikidata":"https://www.wikidata.org/wiki/Q251","display_name":"Java","level":2,"score":0.46284979581832886},{"id":"https://openalex.org/C43126263","wikidata":"https://www.wikidata.org/wiki/Q128751","display_name":"Source code","level":2,"score":0.4499243497848511},{"id":"https://openalex.org/C80444323","wikidata":"https://www.wikidata.org/wiki/Q2878974","display_name":"Theoretical computer science","level":1,"score":0.3429103493690491},{"id":"https://openalex.org/C86803240","wikidata":"https://www.wikidata.org/wiki/Q420","display_name":"Biology","level":0,"score":0.1830054223537445},{"id":"https://openalex.org/C154945302","wikidata":"https://www.wikidata.org/wiki/Q11660","display_name":"Artificial intelligence","level":1,"score":0.1641674041748047},{"id":"https://openalex.org/C55493867","wikidata":"https://www.wikidata.org/wiki/Q7094","display_name":"Biochemistry","level":1,"score":0.0},{"id":"https://openalex.org/C104317684","wikidata":"https://www.wikidata.org/wiki/Q7187","display_name":"Gene","level":2,"score":0.0}],"mesh":[{"descriptor_ui":"D000465","descriptor_name":"Algorithms","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D000465","descriptor_name":"Algorithms","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D000465","descriptor_name":"Algorithms","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D010802","descriptor_name":"Phylogeny","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D010802","descriptor_name":"Phylogeny","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D010802","descriptor_name":"Phylogeny","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D011381","descriptor_name":"Programming Languages","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D011381","descriptor_name":"Programming Languages","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D011381","descriptor_name":"Programming Languages","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D012984","descriptor_name":"Software","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D012984","descriptor_name":"Software","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D012984","descriptor_name":"Software","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D016208","descriptor_name":"Databases, Factual","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D016208","descriptor_name":"Databases, Factual","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D016208","descriptor_name":"Databases, Factual","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D019295","descriptor_name":"Computational Biology","qualifier_ui":"Q000379","qualifier_name":"methods","is_major_topic":false},{"descriptor_ui":"D019295","descriptor_name":"Computational Biology","qualifier_ui":"Q000379","qualifier_name":"methods","is_major_topic":false},{"descriptor_ui":"D019295","descriptor_name":"Computational Biology","qualifier_ui":"Q000379","qualifier_name":"methods","is_major_topic":false}],"locations_count":2,"locations":[{"id":"doi:10.1093/bioinformatics/btq228","is_oa":true,"landing_page_url":"https://doi.org/10.1093/bioinformatics/btq228","pdf_url":"https://academic.oup.com/bioinformatics/article-pdf/26/12/1569/48858541/bioinformatics_26_12_1569.pdf","source":{"id":"https://openalex.org/S52395412","display_name":"Bioinformatics","issn_l":"1367-4803","issn":["1367-4803","1367-4811"],"is_oa":false,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310311648","host_organization_name":"Oxford University Press","host_organization_lineage":["https://openalex.org/P4310311648","https://openalex.org/P4310311647"],"host_organization_lineage_names":["Oxford University Press","University of Oxford"],"type":"journal"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Bioinformatics","raw_type":"journal-article"},{"id":"pmid:20421198","is_oa":false,"landing_page_url":"https://pubmed.ncbi.nlm.nih.gov/20421198","pdf_url":null,"source":{"id":"https://openalex.org/S4306525036","display_name":"PubMed","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I1299303238","host_organization_name":"National Institutes of Health","host_organization_lineage":["https://openalex.org/I1299303238"],"host_organization_lineage_names":[],"type":"repository"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Bioinformatics (Oxford, England)","raw_type":null}],"best_oa_location":{"id":"doi:10.1093/bioinformatics/btq228","is_oa":true,"landing_page_url":"https://doi.org/10.1093/bioinformatics/btq228","pdf_url":"https://academic.oup.com/bioinformatics/article-pdf/26/12/1569/48858541/bioinformatics_26_12_1569.pdf","source":{"id":"https://openalex.org/S52395412","display_name":"Bioinformatics","issn_l":"1367-4803","issn":["1367-4803","1367-4811"],"is_oa":false,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310311648","host_organization_name":"Oxford University Press","host_organization_lineage":["https://openalex.org/P4310311648","https://openalex.org/P4310311647"],"host_organization_lineage_names":["Oxford University Press","University of Oxford"],"type":"journal"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Bioinformatics","raw_type":"journal-article"},"sustainable_development_goals":[{"score":0.800000011920929,"display_name":"Quality Education","id":"https://metadata.un.org/sdg/4"}],"awards":[{"id":"https://openalex.org/G2879289230","display_name":"Information Technology Research (ITR): Building the Tree of Life -- A National Resource for Phyloinformatics and Computational Phylogenetics","funder_award_id":"0715370","funder_id":"https://openalex.org/F4320306076","funder_display_name":"National Science Foundation"}],"funders":[{"id":"https://openalex.org/F4320306076","display_name":"National Science Foundation","ror":"https://ror.org/021nxhr62"}],"has_content":{"pdf":true,"grobid_xml":true},"content_urls":{"pdf":"https://content.openalex.org/works/W2139736670.pdf","grobid_xml":"https://content.openalex.org/works/W2139736670.grobid-xml"},"referenced_works_count":14,"referenced_works":["https://openalex.org/W1897064680","https://openalex.org/W1965555277","https://openalex.org/W1993038297","https://openalex.org/W2060425093","https://openalex.org/W2114850508","https://openalex.org/W2118610143","https://openalex.org/W2143980572","https://openalex.org/W2151409320","https://openalex.org/W2582743722","https://openalex.org/W3217097258","https://openalex.org/W4210633230","https://openalex.org/W4233815609","https://openalex.org/W4399583572","https://openalex.org/W6773252166"],"related_works":["https://openalex.org/W3199434107","https://openalex.org/W4312970618","https://openalex.org/W2528467228","https://openalex.org/W118725990","https://openalex.org/W4205531442","https://openalex.org/W4380768849","https://openalex.org/W96642435","https://openalex.org/W2526471199","https://openalex.org/W156558786","https://openalex.org/W3101523611"],"abstract_inverted_index":{"The":[0],"stable":[1],"release":[2],"of":[3],"the":[4,14,21,30],"library":[5],"is":[6,27],"available":[7,28],"for":[8],"download":[9],"and":[10],"automated":[11],"installation":[12],"through":[13],"Python":[15],"Package":[16],"Index":[17],"site":[18],"(http://pypi.python.org/pypi/DendroPy),":[19],"while":[20],"active":[22],"development":[23],"source":[24],"code":[25],"repository":[26],"to":[29],"public":[31],"from":[32],"GitHub":[33],"(http://github.com/jeetsukumaran/DendroPy).":[34]},"counts_by_year":[{"year":2026,"cited_by_count":15},{"year":2025,"cited_by_count":76},{"year":2024,"cited_by_count":132},{"year":2023,"cited_by_count":138},{"year":2022,"cited_by_count":118},{"year":2021,"cited_by_count":124},{"year":2020,"cited_by_count":160},{"year":2019,"cited_by_count":158},{"year":2018,"cited_by_count":126},{"year":2017,"cited_by_count":140},{"year":2016,"cited_by_count":157},{"year":2015,"cited_by_count":134},{"year":2014,"cited_by_count":101},{"year":2013,"cited_by_count":81},{"year":2012,"cited_by_count":56}],"updated_date":"2026-04-02T15:55:50.835912","created_date":"2025-10-10T00:00:00"}