{"id":"https://openalex.org/W2103320915","doi":"https://doi.org/10.1093/bioinformatics/btq180","title":"Complex event extraction at PubMed scale","display_name":"Complex event extraction at PubMed scale","publication_year":2010,"publication_date":"2010-06-01","ids":{"openalex":"https://openalex.org/W2103320915","doi":"https://doi.org/10.1093/bioinformatics/btq180","mag":"2103320915","pmid":"https://pubmed.ncbi.nlm.nih.gov/20529932"},"language":"en","primary_location":{"id":"doi:10.1093/bioinformatics/btq180","is_oa":true,"landing_page_url":"https://doi.org/10.1093/bioinformatics/btq180","pdf_url":"https://academic.oup.com/bioinformatics/article-pdf/26/12/i382/48857088/bioinformatics_26_12_i382.pdf","source":{"id":"https://openalex.org/S52395412","display_name":"Bioinformatics","issn_l":"1367-4803","issn":["1367-4803","1367-4811"],"is_oa":false,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310311648","host_organization_name":"Oxford University Press","host_organization_lineage":["https://openalex.org/P4310311648","https://openalex.org/P4310311647"],"host_organization_lineage_names":["Oxford University Press","University of Oxford"],"type":"journal"},"license":"cc-by-nc","license_id":"https://openalex.org/licenses/cc-by-nc","version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Bioinformatics","raw_type":"journal-article"},"type":"article","indexed_in":["crossref","doaj","pubmed"],"open_access":{"is_oa":true,"oa_status":"hybrid","oa_url":"https://academic.oup.com/bioinformatics/article-pdf/26/12/i382/48857088/bioinformatics_26_12_i382.pdf","any_repository_has_fulltext":true},"authorships":[{"author_position":"first","author":{"id":"https://openalex.org/A5049143500","display_name":"Jari Bj\u00f6rne","orcid":"https://orcid.org/0000-0003-1722-6404"},"institutions":[{"id":"https://openalex.org/I155660961","display_name":"University of Turku","ror":"https://ror.org/05vghhr25","country_code":"FI","type":"education","lineage":["https://openalex.org/I155660961"]},{"id":"https://openalex.org/I183173800","display_name":"Turku Centre for Computer Science","ror":"https://ror.org/00vy7ed73","country_code":"FI","type":"facility","lineage":["https://openalex.org/I130217899","https://openalex.org/I155660961","https://openalex.org/I183173800"]},{"id":"https://openalex.org/I28407311","display_name":"University of Manchester","ror":"https://ror.org/027m9bs27","country_code":"GB","type":"education","lineage":["https://openalex.org/I28407311"]},{"id":"https://openalex.org/I74801974","display_name":"The University of Tokyo","ror":"https://ror.org/057zh3y96","country_code":"JP","type":"education","lineage":["https://openalex.org/I74801974"]}],"countries":["FI","GB","JP"],"is_corresponding":true,"raw_author_name":"Jari Bj\u00f6rne","raw_affiliation_strings":["1 Department of Information Technology, University of Turku, Turku, Finland, 2 Turku Centre for Computer Science (TUCS), Turku, 3 Department of Computer Science, University of Tokyo, Tokyo, Japan and 4 National Centre for Text Mining, University of Manchester, Manchester, UK"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"1 Department of Information Technology, University of Turku, Turku, Finland, 2 Turku Centre for Computer Science (TUCS), Turku, 3 Department of Computer Science, University of Tokyo, Tokyo, Japan and 4 National Centre for Text Mining, University of Manchester, Manchester, UK","institution_ids":["https://openalex.org/I183173800","https://openalex.org/I28407311","https://openalex.org/I155660961","https://openalex.org/I74801974"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5019929457","display_name":"Filip Ginter","orcid":"https://orcid.org/0000-0002-5484-6103"},"institutions":[{"id":"https://openalex.org/I155660961","display_name":"University of Turku","ror":"https://ror.org/05vghhr25","country_code":"FI","type":"education","lineage":["https://openalex.org/I155660961"]},{"id":"https://openalex.org/I183173800","display_name":"Turku Centre for Computer Science","ror":"https://ror.org/00vy7ed73","country_code":"FI","type":"facility","lineage":["https://openalex.org/I130217899","https://openalex.org/I155660961","https://openalex.org/I183173800"]},{"id":"https://openalex.org/I28407311","display_name":"University of Manchester","ror":"https://ror.org/027m9bs27","country_code":"GB","type":"education","lineage":["https://openalex.org/I28407311"]},{"id":"https://openalex.org/I74801974","display_name":"The University of Tokyo","ror":"https://ror.org/057zh3y96","country_code":"JP","type":"education","lineage":["https://openalex.org/I74801974"]}],"countries":["FI","GB","JP"],"is_corresponding":false,"raw_author_name":"Filip Ginter","raw_affiliation_strings":["1 Department of Information Technology, University of Turku, Turku, Finland, 2 Turku Centre for Computer Science (TUCS), Turku, 3 Department of Computer Science, University of Tokyo, Tokyo, Japan and 4 National Centre for Text Mining, University of Manchester, Manchester, UK"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"1 Department of Information Technology, University of Turku, Turku, Finland, 2 Turku Centre for Computer Science (TUCS), Turku, 3 Department of Computer Science, University of Tokyo, Tokyo, Japan and 4 National Centre for Text Mining, University of Manchester, Manchester, UK","institution_ids":["https://openalex.org/I183173800","https://openalex.org/I28407311","https://openalex.org/I155660961","https://openalex.org/I74801974"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5066925770","display_name":"Sampo Pyysalo","orcid":"https://orcid.org/0000-0002-6279-5000"},"institutions":[{"id":"https://openalex.org/I155660961","display_name":"University of Turku","ror":"https://ror.org/05vghhr25","country_code":"FI","type":"education","lineage":["https://openalex.org/I155660961"]},{"id":"https://openalex.org/I183173800","display_name":"Turku Centre for Computer Science","ror":"https://ror.org/00vy7ed73","country_code":"FI","type":"facility","lineage":["https://openalex.org/I130217899","https://openalex.org/I155660961","https://openalex.org/I183173800"]},{"id":"https://openalex.org/I28407311","display_name":"University of Manchester","ror":"https://ror.org/027m9bs27","country_code":"GB","type":"education","lineage":["https://openalex.org/I28407311"]},{"id":"https://openalex.org/I74801974","display_name":"The University of Tokyo","ror":"https://ror.org/057zh3y96","country_code":"JP","type":"education","lineage":["https://openalex.org/I74801974"]}],"countries":["FI","GB","JP"],"is_corresponding":false,"raw_author_name":"Sampo Pyysalo","raw_affiliation_strings":["1 Department of Information Technology, University of Turku, Turku, Finland, 2 Turku Centre for Computer Science (TUCS), Turku, 3 Department of Computer Science, University of Tokyo, Tokyo, Japan and 4 National Centre for Text Mining, University of Manchester, Manchester, UK"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"1 Department of Information Technology, University of Turku, Turku, Finland, 2 Turku Centre for Computer Science (TUCS), Turku, 3 Department of Computer Science, University of Tokyo, Tokyo, Japan and 4 National Centre for Text Mining, University of Manchester, Manchester, UK","institution_ids":["https://openalex.org/I183173800","https://openalex.org/I28407311","https://openalex.org/I155660961","https://openalex.org/I74801974"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5112241147","display_name":"Jun\u2019ichi Tsujii","orcid":null},"institutions":[{"id":"https://openalex.org/I155660961","display_name":"University of Turku","ror":"https://ror.org/05vghhr25","country_code":"FI","type":"education","lineage":["https://openalex.org/I155660961"]},{"id":"https://openalex.org/I183173800","display_name":"Turku Centre for Computer Science","ror":"https://ror.org/00vy7ed73","country_code":"FI","type":"facility","lineage":["https://openalex.org/I130217899","https://openalex.org/I155660961","https://openalex.org/I183173800"]},{"id":"https://openalex.org/I28407311","display_name":"University of Manchester","ror":"https://ror.org/027m9bs27","country_code":"GB","type":"education","lineage":["https://openalex.org/I28407311"]},{"id":"https://openalex.org/I74801974","display_name":"The University of Tokyo","ror":"https://ror.org/057zh3y96","country_code":"JP","type":"education","lineage":["https://openalex.org/I74801974"]}],"countries":["FI","GB","JP"],"is_corresponding":false,"raw_author_name":"Jun'ichi Tsujii","raw_affiliation_strings":["1 Department of Information Technology, University of Turku, Turku, Finland, 2 Turku Centre for Computer Science (TUCS), Turku, 3 Department of Computer Science, University of Tokyo, Tokyo, Japan and 4 National Centre for Text Mining, University of Manchester, Manchester, UK"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"1 Department of Information Technology, University of Turku, Turku, Finland, 2 Turku Centre for Computer Science (TUCS), Turku, 3 Department of Computer Science, University of Tokyo, Tokyo, Japan and 4 National Centre for Text Mining, University of Manchester, Manchester, UK","institution_ids":["https://openalex.org/I183173800","https://openalex.org/I28407311","https://openalex.org/I155660961","https://openalex.org/I74801974"]}]},{"author_position":"last","author":{"id":"https://openalex.org/A5105839982","display_name":"Tapio Salakoski","orcid":null},"institutions":[{"id":"https://openalex.org/I155660961","display_name":"University of Turku","ror":"https://ror.org/05vghhr25","country_code":"FI","type":"education","lineage":["https://openalex.org/I155660961"]},{"id":"https://openalex.org/I183173800","display_name":"Turku Centre for Computer Science","ror":"https://ror.org/00vy7ed73","country_code":"FI","type":"facility","lineage":["https://openalex.org/I130217899","https://openalex.org/I155660961","https://openalex.org/I183173800"]},{"id":"https://openalex.org/I28407311","display_name":"University of Manchester","ror":"https://ror.org/027m9bs27","country_code":"GB","type":"education","lineage":["https://openalex.org/I28407311"]},{"id":"https://openalex.org/I74801974","display_name":"The University of Tokyo","ror":"https://ror.org/057zh3y96","country_code":"JP","type":"education","lineage":["https://openalex.org/I74801974"]}],"countries":["FI","GB","JP"],"is_corresponding":false,"raw_author_name":"Tapio Salakoski","raw_affiliation_strings":["1 Department of Information Technology, University of Turku, Turku, Finland, 2 Turku Centre for Computer Science (TUCS), Turku, 3 Department of Computer Science, University of Tokyo, Tokyo, Japan and 4 National Centre for Text Mining, University of Manchester, Manchester, UK"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"1 Department of Information Technology, University of Turku, Turku, Finland, 2 Turku Centre for Computer Science (TUCS), Turku, 3 Department of Computer Science, University of Tokyo, Tokyo, Japan and 4 National Centre for Text Mining, University of Manchester, Manchester, UK","institution_ids":["https://openalex.org/I183173800","https://openalex.org/I28407311","https://openalex.org/I155660961","https://openalex.org/I74801974"]}]}],"institutions":[],"countries_distinct_count":3,"institutions_distinct_count":4,"corresponding_author_ids":["https://openalex.org/A5049143500"],"corresponding_institution_ids":["https://openalex.org/I155660961","https://openalex.org/I183173800","https://openalex.org/I28407311","https://openalex.org/I74801974"],"apc_list":{"value":3618,"currency":"USD","value_usd":3618},"apc_paid":{"value":3618,"currency":"USD","value_usd":3618},"fwci":7.2493,"has_fulltext":true,"cited_by_count":121,"citation_normalized_percentile":{"value":0.97969329,"is_in_top_1_percent":false,"is_in_top_10_percent":true},"cited_by_percentile_year":{"min":94,"max":100},"biblio":{"volume":"26","issue":"12","first_page":"i382","last_page":"i390"},"is_retracted":false,"is_paratext":false,"is_xpac":false,"primary_topic":{"id":"https://openalex.org/T11710","display_name":"Biomedical Text Mining and Ontologies","score":0.9839000105857849,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},"topics":[{"id":"https://openalex.org/T11710","display_name":"Biomedical Text Mining and Ontologies","score":0.9839000105857849,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},{"id":"https://openalex.org/T10028","display_name":"Topic Modeling","score":0.004800000227987766,"subfield":{"id":"https://openalex.org/subfields/1702","display_name":"Artificial Intelligence"},"field":{"id":"https://openalex.org/fields/17","display_name":"Computer Science"},"domain":{"id":"https://openalex.org/domains/3","display_name":"Physical Sciences"}},{"id":"https://openalex.org/T13083","display_name":"Advanced Text Analysis Techniques","score":0.004000000189989805,"subfield":{"id":"https://openalex.org/subfields/1702","display_name":"Artificial Intelligence"},"field":{"id":"https://openalex.org/fields/17","display_name":"Computer Science"},"domain":{"id":"https://openalex.org/domains/3","display_name":"Physical Sciences"}}],"keywords":[{"id":"https://openalex.org/keywords/computer-science","display_name":"Computer science","score":0.8619972467422485},{"id":"https://openalex.org/keywords/event","display_name":"Event (particle physics)","score":0.7922104597091675},{"id":"https://openalex.org/keywords/relationship-extraction","display_name":"Relationship extraction","score":0.7399566173553467},{"id":"https://openalex.org/keywords/generalization","display_name":"Generalization","score":0.6980716586112976},{"id":"https://openalex.org/keywords/information-extraction","display_name":"Information extraction","score":0.6913536787033081},{"id":"https://openalex.org/keywords/biomedical-text-mining","display_name":"Biomedical text mining","score":0.6889278292655945},{"id":"https://openalex.org/keywords/parsing","display_name":"Parsing","score":0.6373639106750488},{"id":"https://openalex.org/keywords/scale","display_name":"Scale (ratio)","score":0.5207445621490479},{"id":"https://openalex.org/keywords/representation","display_name":"Representation (politics)","score":0.4985649585723877},{"id":"https://openalex.org/keywords/information-retrieval","display_name":"Information retrieval","score":0.474018394947052},{"id":"https://openalex.org/keywords/data-mining","display_name":"Data mining","score":0.4700671136379242},{"id":"https://openalex.org/keywords/natural-language-processing","display_name":"Natural language processing","score":0.4647364616394043},{"id":"https://openalex.org/keywords/artificial-intelligence","display_name":"Artificial intelligence","score":0.3967878818511963},{"id":"https://openalex.org/keywords/text-mining","display_name":"Text mining","score":0.14612579345703125}],"concepts":[{"id":"https://openalex.org/C41008148","wikidata":"https://www.wikidata.org/wiki/Q21198","display_name":"Computer science","level":0,"score":0.8619972467422485},{"id":"https://openalex.org/C2779662365","wikidata":"https://www.wikidata.org/wiki/Q5416694","display_name":"Event (particle physics)","level":2,"score":0.7922104597091675},{"id":"https://openalex.org/C153604712","wikidata":"https://www.wikidata.org/wiki/Q7310755","display_name":"Relationship extraction","level":3,"score":0.7399566173553467},{"id":"https://openalex.org/C177148314","wikidata":"https://www.wikidata.org/wiki/Q170084","display_name":"Generalization","level":2,"score":0.6980716586112976},{"id":"https://openalex.org/C195807954","wikidata":"https://www.wikidata.org/wiki/Q1662562","display_name":"Information extraction","level":2,"score":0.6913536787033081},{"id":"https://openalex.org/C165141518","wikidata":"https://www.wikidata.org/wiki/Q4915126","display_name":"Biomedical text mining","level":3,"score":0.6889278292655945},{"id":"https://openalex.org/C186644900","wikidata":"https://www.wikidata.org/wiki/Q194152","display_name":"Parsing","level":2,"score":0.6373639106750488},{"id":"https://openalex.org/C2778755073","wikidata":"https://www.wikidata.org/wiki/Q10858537","display_name":"Scale (ratio)","level":2,"score":0.5207445621490479},{"id":"https://openalex.org/C2776359362","wikidata":"https://www.wikidata.org/wiki/Q2145286","display_name":"Representation (politics)","level":3,"score":0.4985649585723877},{"id":"https://openalex.org/C23123220","wikidata":"https://www.wikidata.org/wiki/Q816826","display_name":"Information retrieval","level":1,"score":0.474018394947052},{"id":"https://openalex.org/C124101348","wikidata":"https://www.wikidata.org/wiki/Q172491","display_name":"Data mining","level":1,"score":0.4700671136379242},{"id":"https://openalex.org/C204321447","wikidata":"https://www.wikidata.org/wiki/Q30642","display_name":"Natural language processing","level":1,"score":0.4647364616394043},{"id":"https://openalex.org/C154945302","wikidata":"https://www.wikidata.org/wiki/Q11660","display_name":"Artificial intelligence","level":1,"score":0.3967878818511963},{"id":"https://openalex.org/C71472368","wikidata":"https://www.wikidata.org/wiki/Q676880","display_name":"Text mining","level":2,"score":0.14612579345703125},{"id":"https://openalex.org/C121332964","wikidata":"https://www.wikidata.org/wiki/Q413","display_name":"Physics","level":0,"score":0.0},{"id":"https://openalex.org/C62520636","wikidata":"https://www.wikidata.org/wiki/Q944","display_name":"Quantum mechanics","level":1,"score":0.0},{"id":"https://openalex.org/C33923547","wikidata":"https://www.wikidata.org/wiki/Q395","display_name":"Mathematics","level":0,"score":0.0},{"id":"https://openalex.org/C17744445","wikidata":"https://www.wikidata.org/wiki/Q36442","display_name":"Political science","level":0,"score":0.0},{"id":"https://openalex.org/C199539241","wikidata":"https://www.wikidata.org/wiki/Q7748","display_name":"Law","level":1,"score":0.0},{"id":"https://openalex.org/C94625758","wikidata":"https://www.wikidata.org/wiki/Q7163","display_name":"Politics","level":2,"score":0.0},{"id":"https://openalex.org/C134306372","wikidata":"https://www.wikidata.org/wiki/Q7754","display_name":"Mathematical analysis","level":1,"score":0.0}],"mesh":[{"descriptor_ui":"D009323","descriptor_name":"Natural Language Processing","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D009323","descriptor_name":"Natural Language Processing","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D009323","descriptor_name":"Natural Language Processing","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D039781","descriptor_name":"PubMed","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D039781","descriptor_name":"PubMed","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D039781","descriptor_name":"PubMed","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D049490","descriptor_name":"Systems Biology","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D049490","descriptor_name":"Systems Biology","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D049490","descriptor_name":"Systems Biology","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D057225","descriptor_name":"Data Mining","qualifier_ui":"Q000379","qualifier_name":"methods","is_major_topic":false},{"descriptor_ui":"D057225","descriptor_name":"Data Mining","qualifier_ui":"Q000379","qualifier_name":"methods","is_major_topic":false},{"descriptor_ui":"D057225","descriptor_name":"Data Mining","qualifier_ui":"Q000379","qualifier_name":"methods","is_major_topic":false}],"locations_count":3,"locations":[{"id":"doi:10.1093/bioinformatics/btq180","is_oa":true,"landing_page_url":"https://doi.org/10.1093/bioinformatics/btq180","pdf_url":"https://academic.oup.com/bioinformatics/article-pdf/26/12/i382/48857088/bioinformatics_26_12_i382.pdf","source":{"id":"https://openalex.org/S52395412","display_name":"Bioinformatics","issn_l":"1367-4803","issn":["1367-4803","1367-4811"],"is_oa":false,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310311648","host_organization_name":"Oxford University Press","host_organization_lineage":["https://openalex.org/P4310311648","https://openalex.org/P4310311647"],"host_organization_lineage_names":["Oxford University Press","University of Oxford"],"type":"journal"},"license":"cc-by-nc","license_id":"https://openalex.org/licenses/cc-by-nc","version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Bioinformatics","raw_type":"journal-article"},{"id":"pmid:20529932","is_oa":false,"landing_page_url":"https://pubmed.ncbi.nlm.nih.gov/20529932","pdf_url":null,"source":{"id":"https://openalex.org/S4306525036","display_name":"PubMed","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I1299303238","host_organization_name":"National Institutes of Health","host_organization_lineage":["https://openalex.org/I1299303238"],"host_organization_lineage_names":[],"type":"repository"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Bioinformatics (Oxford, England)","raw_type":null},{"id":"pmh:oai:pubmedcentral.nih.gov:2881365","is_oa":true,"landing_page_url":"https://www.ncbi.nlm.nih.gov/pmc/articles/2881365","pdf_url":null,"source":{"id":"https://openalex.org/S2764455111","display_name":"PubMed Central","issn_l":null,"issn":null,"is_oa":true,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I1299303238","host_organization_name":"National Institutes of Health","host_organization_lineage":["https://openalex.org/I1299303238"],"host_organization_lineage_names":[],"type":"repository"},"license":null,"license_id":null,"version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":"Bioinformatics","raw_type":"Text"}],"best_oa_location":{"id":"doi:10.1093/bioinformatics/btq180","is_oa":true,"landing_page_url":"https://doi.org/10.1093/bioinformatics/btq180","pdf_url":"https://academic.oup.com/bioinformatics/article-pdf/26/12/i382/48857088/bioinformatics_26_12_i382.pdf","source":{"id":"https://openalex.org/S52395412","display_name":"Bioinformatics","issn_l":"1367-4803","issn":["1367-4803","1367-4811"],"is_oa":false,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310311648","host_organization_name":"Oxford University Press","host_organization_lineage":["https://openalex.org/P4310311648","https://openalex.org/P4310311647"],"host_organization_lineage_names":["Oxford University Press","University of Oxford"],"type":"journal"},"license":"cc-by-nc","license_id":"https://openalex.org/licenses/cc-by-nc","version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Bioinformatics","raw_type":"journal-article"},"sustainable_development_goals":[{"id":"https://metadata.un.org/sdg/4","score":0.699999988079071,"display_name":"Quality Education"}],"awards":[],"funders":[{"id":"https://openalex.org/F4320320912","display_name":"Ministry of Education, Culture, Sports, Science and Technology","ror":"https://ror.org/048rj2z13"},{"id":"https://openalex.org/F4320322725","display_name":"China Scholarship Council","ror":"https://ror.org/04atp4p48"},{"id":"https://openalex.org/F4320323313","display_name":"Turun Yliopisto","ror":"https://ror.org/05vghhr25"}],"has_content":{"grobid_xml":true,"pdf":true},"content_urls":{"pdf":"https://content.openalex.org/works/W2103320915.pdf","grobid_xml":"https://content.openalex.org/works/W2103320915.grobid-xml"},"referenced_works_count":49,"referenced_works":["https://openalex.org/W102233799","https://openalex.org/W122290181","https://openalex.org/W1508977358","https://openalex.org/W1578007978","https://openalex.org/W1623698862","https://openalex.org/W1818857488","https://openalex.org/W1850865022","https://openalex.org/W1972938566","https://openalex.org/W1990794790","https://openalex.org/W1996736664","https://openalex.org/W2018874418","https://openalex.org/W2032566933","https://openalex.org/W2044514479","https://openalex.org/W2047782770","https://openalex.org/W2048140075","https://openalex.org/W2064030835","https://openalex.org/W2075655036","https://openalex.org/W2094061585","https://openalex.org/W2099696750","https://openalex.org/W2103897355","https://openalex.org/W2104088268","https://openalex.org/W2105842272","https://openalex.org/W2107005506","https://openalex.org/W2108010925","https://openalex.org/W2108706252","https://openalex.org/W2111727122","https://openalex.org/W2115516470","https://openalex.org/W2125712079","https://openalex.org/W2131887446","https://openalex.org/W2132784310","https://openalex.org/W2136449704","https://openalex.org/W2143353625","https://openalex.org/W2149803936","https://openalex.org/W2154142897","https://openalex.org/W2166111585","https://openalex.org/W2189472871","https://openalex.org/W2399295001","https://openalex.org/W2912026815","https://openalex.org/W2923652028","https://openalex.org/W4240578612","https://openalex.org/W4285719527","https://openalex.org/W4297809627","https://openalex.org/W6604196984","https://openalex.org/W6638437310","https://openalex.org/W6658704000","https://openalex.org/W6662590293","https://openalex.org/W6675783020","https://openalex.org/W6675914680","https://openalex.org/W6940158366"],"related_works":["https://openalex.org/W2064314529","https://openalex.org/W2352298027","https://openalex.org/W4319940250","https://openalex.org/W842810586","https://openalex.org/W2092919065","https://openalex.org/W4236762297","https://openalex.org/W3138801416","https://openalex.org/W2369351710","https://openalex.org/W2572241437","https://openalex.org/W4379379356"],"abstract_inverted_index":{"MOTIVATION:":[0],"There":[1],"has":[2],"recently":[3],"been":[4,84],"a":[5,54,111,132,181],"notable":[6],"shift":[7],"in":[8],"biomedical":[9,30],"information":[10],"extraction":[11,77,151,164,178],"(IE)":[12],"from":[13,62,165],"relation":[14],"models":[15],"toward":[16],"the":[17,24,34,73,88,92,95,129,142,146,166,174,177,186],"more":[18],"expressive":[19],"event":[20,41,76,125,150,163,191],"model,":[21],"facilitated":[22],"by":[23],"maturation":[25],"of":[26,36,46,56,75,87,91,97,136,145,149,176,183,185],"basic":[27],"tools":[28],"for":[29,118],"text":[31,58],"analysis":[32],"and":[33,51,124,127,156,194,201],"availability":[35],"manually":[37],"annotated":[38],"resources.":[39],"The":[40,190],"model":[42],"allows":[43],"detailed":[44],"representation":[45],"complex":[47],"natural":[48],"language":[49],"statements":[50],"can":[52],"support":[53],"number":[55,182],"advanced":[57],"mining":[59],"applications":[60],"ranging":[61],"semantic":[63],"search":[64],"to":[65,153],"pathway":[66],"extraction.":[67,99],"A":[68],"recent":[69],"collaborative":[70],"evaluation":[71,144],"demonstrated":[72],"potential":[74],"systems,":[78],"yet":[79],"there":[80],"have":[81],"so":[82],"far":[83],"no":[85],"studies":[86],"generalization":[89,147],"ability":[90],"systems":[93,152],"nor":[94],"feasibility":[96],"large-scale":[98],"RESULTS:":[100],"This":[101],"study":[102],"considers":[103],"event-based":[104],"IE":[105],"at":[106,203],"PubMed":[107,138,168],"scale.":[108],"We":[109,140,171],"introduce":[110],"system":[112,130,193],"combining":[113],"publicly":[114],"available,":[115],"state-of-the-art":[116],"methods":[117],"domain":[119],"parsing,":[120],"named":[121],"entity":[122],"recognition":[123],"extraction,":[126],"test":[128],"on":[131],"representative":[133],"1%":[134],"sample":[135],"all":[137],"citations.":[139],"present":[141],"first":[143],"performance":[148],"this":[154],"scale":[155],"show":[157],"that":[158],"despite":[159],"its":[160],"computational":[161],"complexity,":[162],"entire":[167],"is":[169],"feasible.":[170],"further":[172],"illustrate":[173],"value":[175],"approach":[179],"through":[180],"analyses":[184],"extracted":[187,195],"information.":[188],"AVAILABILITY:":[189],"detection":[192],"data":[196],"are":[197],"open":[198],"source":[199],"licensed":[200],"available":[202],"http://bionlp.utu.fi/.":[204]},"counts_by_year":[{"year":2024,"cited_by_count":5},{"year":2023,"cited_by_count":2},{"year":2022,"cited_by_count":4},{"year":2021,"cited_by_count":5},{"year":2020,"cited_by_count":8},{"year":2019,"cited_by_count":8},{"year":2018,"cited_by_count":5},{"year":2017,"cited_by_count":6},{"year":2016,"cited_by_count":3},{"year":2015,"cited_by_count":12},{"year":2014,"cited_by_count":9},{"year":2013,"cited_by_count":13},{"year":2012,"cited_by_count":21}],"updated_date":"2026-06-16T07:32:37.131356","created_date":"2025-10-10T00:00:00"}
