{"id":"https://openalex.org/W2171672270","doi":"https://doi.org/10.1093/bioinformatics/btq173","title":"Using semantic web rules to reason on an ontology of pseudogenes","display_name":"Using semantic web rules to reason on an ontology of pseudogenes","publication_year":2010,"publication_date":"2010-06-01","ids":{"openalex":"https://openalex.org/W2171672270","doi":"https://doi.org/10.1093/bioinformatics/btq173","mag":"2171672270","pmid":"https://pubmed.ncbi.nlm.nih.gov/20529940"},"language":"en","primary_location":{"id":"doi:10.1093/bioinformatics/btq173","is_oa":true,"landing_page_url":"https://doi.org/10.1093/bioinformatics/btq173","pdf_url":"https://academic.oup.com/bioinformatics/article-pdf/26/12/i71/790058/btq173.pdf","source":{"id":"https://openalex.org/S52395412","display_name":"Bioinformatics","issn_l":"1367-4803","issn":["1367-4803","1367-4811"],"is_oa":false,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310311648","host_organization_name":"Oxford University Press","host_organization_lineage":["https://openalex.org/P4310311648","https://openalex.org/P4310311647"],"host_organization_lineage_names":["Oxford University Press","University of Oxford"],"type":"journal"},"license":"cc-by-nc","license_id":"https://openalex.org/licenses/cc-by-nc","version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Bioinformatics","raw_type":"journal-article"},"type":"article","indexed_in":["crossref","doaj","pubmed"],"open_access":{"is_oa":true,"oa_status":"hybrid","oa_url":"https://academic.oup.com/bioinformatics/article-pdf/26/12/i71/790058/btq173.pdf","any_repository_has_fulltext":true},"authorships":[{"author_position":"first","author":{"id":"https://openalex.org/A5038730595","display_name":"Matthew Holford","orcid":null},"institutions":[{"id":"https://openalex.org/I32971472","display_name":"Yale University","ror":"https://ror.org/03v76x132","country_code":"US","type":"education","lineage":["https://openalex.org/I32971472"]}],"countries":["US"],"is_corresponding":true,"raw_author_name":"Matthew E. Holford","raw_affiliation_strings":["1 Program in Computational Biology and Bioinformatics, 2 Department of Molecular Biophysics and Biochemistry, 3 Department of Computer Science, 4 Center for Medical Informatics and 5 Department of Genetics, Yale University, New Haven, CT 06520, USA"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"1 Program in Computational Biology and Bioinformatics, 2 Department of Molecular Biophysics and Biochemistry, 3 Department of Computer Science, 4 Center for Medical Informatics and 5 Department of Genetics, Yale University, New Haven, CT 06520, USA","institution_ids":["https://openalex.org/I32971472"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5045772189","display_name":"Ekta Khurana","orcid":"https://orcid.org/0000-0002-4351-7566"},"institutions":[{"id":"https://openalex.org/I32971472","display_name":"Yale University","ror":"https://ror.org/03v76x132","country_code":"US","type":"education","lineage":["https://openalex.org/I32971472"]}],"countries":["US"],"is_corresponding":false,"raw_author_name":"Ekta Khurana","raw_affiliation_strings":["1 Program in Computational Biology and Bioinformatics, 2 Department of Molecular Biophysics and Biochemistry, 3 Department of Computer Science, 4 Center for Medical Informatics and 5 Department of Genetics, Yale University, New Haven, CT 06520, USA"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"1 Program in Computational Biology and Bioinformatics, 2 Department of Molecular Biophysics and Biochemistry, 3 Department of Computer Science, 4 Center for Medical Informatics and 5 Department of Genetics, Yale University, New Haven, CT 06520, USA","institution_ids":["https://openalex.org/I32971472"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5110209950","display_name":"Kei\u2010Hoi Cheung","orcid":null},"institutions":[{"id":"https://openalex.org/I32971472","display_name":"Yale University","ror":"https://ror.org/03v76x132","country_code":"US","type":"education","lineage":["https://openalex.org/I32971472"]}],"countries":["US"],"is_corresponding":false,"raw_author_name":"Kei-Hoi Cheung","raw_affiliation_strings":["1 Program in Computational Biology and Bioinformatics, 2 Department of Molecular Biophysics and Biochemistry, 3 Department of Computer Science, 4 Center for Medical Informatics and 5 Department of Genetics, Yale University, New Haven, CT 06520, USA"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"1 Program in Computational Biology and Bioinformatics, 2 Department of Molecular Biophysics and Biochemistry, 3 Department of Computer Science, 4 Center for Medical Informatics and 5 Department of Genetics, Yale University, New Haven, CT 06520, USA","institution_ids":["https://openalex.org/I32971472"]}]},{"author_position":"last","author":{"id":"https://openalex.org/A5042321575","display_name":"Mark Gerstein","orcid":"https://orcid.org/0000-0002-9746-3719"},"institutions":[{"id":"https://openalex.org/I32971472","display_name":"Yale University","ror":"https://ror.org/03v76x132","country_code":"US","type":"education","lineage":["https://openalex.org/I32971472"]}],"countries":["US"],"is_corresponding":true,"raw_author_name":"Mark Gerstein","raw_affiliation_strings":["1 Program in Computational Biology and Bioinformatics, 2 Department of Molecular Biophysics and Biochemistry, 3 Department of Computer Science, 4 Center for Medical Informatics and 5 Department of Genetics, Yale University, New Haven, CT 06520, USA"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"1 Program in Computational Biology and Bioinformatics, 2 Department of Molecular Biophysics and Biochemistry, 3 Department of Computer Science, 4 Center for Medical Informatics and 5 Department of Genetics, Yale University, New Haven, CT 06520, USA","institution_ids":["https://openalex.org/I32971472"]}]}],"institutions":[],"countries_distinct_count":1,"institutions_distinct_count":1,"corresponding_author_ids":["https://openalex.org/A5038730595","https://openalex.org/A5042321575"],"corresponding_institution_ids":["https://openalex.org/I32971472"],"apc_list":{"value":3618,"currency":"USD","value_usd":3618},"apc_paid":{"value":3618,"currency":"USD","value_usd":3618},"fwci":1.074,"has_fulltext":true,"cited_by_count":17,"citation_normalized_percentile":{"value":0.76630181,"is_in_top_1_percent":false,"is_in_top_10_percent":false},"cited_by_percentile_year":{"min":89,"max":98},"biblio":{"volume":"26","issue":"12","first_page":"i71","last_page":"i78"},"is_retracted":false,"is_paratext":false,"is_xpac":false,"primary_topic":{"id":"https://openalex.org/T11710","display_name":"Biomedical Text Mining and Ontologies","score":0.859000027179718,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},"topics":[{"id":"https://openalex.org/T11710","display_name":"Biomedical Text Mining and Ontologies","score":0.859000027179718,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},{"id":"https://openalex.org/T11642","display_name":"Genomics and Rare Diseases","score":0.052000001072883606,"subfield":{"id":"https://openalex.org/subfields/1311","display_name":"Genetics"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},{"id":"https://openalex.org/T10215","display_name":"Semantic Web and Ontologies","score":0.03579999879002571,"subfield":{"id":"https://openalex.org/subfields/1702","display_name":"Artificial Intelligence"},"field":{"id":"https://openalex.org/fields/17","display_name":"Computer Science"},"domain":{"id":"https://openalex.org/domains/3","display_name":"Physical Sciences"}}],"keywords":[{"id":"https://openalex.org/keywords/computer-science","display_name":"Computer science","score":0.8005297183990479},{"id":"https://openalex.org/keywords/pseudogene","display_name":"Pseudogene","score":0.711911678314209},{"id":"https://openalex.org/keywords/ontology","display_name":"Ontology","score":0.6690671443939209},{"id":"https://openalex.org/keywords/sparql","display_name":"SPARQL","score":0.6557574272155762},{"id":"https://openalex.org/keywords/knowledge-base","display_name":"Knowledge base","score":0.5727570652961731},{"id":"https://openalex.org/keywords/information-retrieval","display_name":"Information retrieval","score":0.5727152824401855},{"id":"https://openalex.org/keywords/semantic-reasoner","display_name":"Semantic reasoner","score":0.5207988023757935},{"id":"https://openalex.org/keywords/semantic-web","display_name":"Semantic Web","score":0.500399112701416},{"id":"https://openalex.org/keywords/web-ontology-language","display_name":"Web Ontology Language","score":0.4260023236274719},{"id":"https://openalex.org/keywords/semantic-web-rule-language","display_name":"Semantic Web Rule Language","score":0.42443203926086426},{"id":"https://openalex.org/keywords/world-wide-web","display_name":"World Wide Web","score":0.4209812581539154},{"id":"https://openalex.org/keywords/artificial-intelligence","display_name":"Artificial intelligence","score":0.2647027373313904},{"id":"https://openalex.org/keywords/social-semantic-web","display_name":"Social Semantic Web","score":0.20717212557792664},{"id":"https://openalex.org/keywords/rdf","display_name":"RDF","score":0.19876646995544434},{"id":"https://openalex.org/keywords/semantic-analytics","display_name":"Semantic analytics","score":0.11614158749580383}],"concepts":[{"id":"https://openalex.org/C41008148","wikidata":"https://www.wikidata.org/wiki/Q21198","display_name":"Computer science","level":0,"score":0.8005297183990479},{"id":"https://openalex.org/C34957205","wikidata":"https://www.wikidata.org/wiki/Q277338","display_name":"Pseudogene","level":4,"score":0.711911678314209},{"id":"https://openalex.org/C25810664","wikidata":"https://www.wikidata.org/wiki/Q44325","display_name":"Ontology","level":2,"score":0.6690671443939209},{"id":"https://openalex.org/C41009113","wikidata":"https://www.wikidata.org/wiki/Q54871","display_name":"SPARQL","level":4,"score":0.6557574272155762},{"id":"https://openalex.org/C4554734","wikidata":"https://www.wikidata.org/wiki/Q593744","display_name":"Knowledge base","level":2,"score":0.5727570652961731},{"id":"https://openalex.org/C23123220","wikidata":"https://www.wikidata.org/wiki/Q816826","display_name":"Information retrieval","level":1,"score":0.5727152824401855},{"id":"https://openalex.org/C9616225","wikidata":"https://www.wikidata.org/wiki/Q3929429","display_name":"Semantic reasoner","level":2,"score":0.5207988023757935},{"id":"https://openalex.org/C2129575","wikidata":"https://www.wikidata.org/wiki/Q54837","display_name":"Semantic Web","level":2,"score":0.500399112701416},{"id":"https://openalex.org/C101230327","wikidata":"https://www.wikidata.org/wiki/Q826165","display_name":"Web Ontology Language","level":3,"score":0.4260023236274719},{"id":"https://openalex.org/C71695816","wikidata":"https://www.wikidata.org/wiki/Q3478367","display_name":"Semantic Web Rule Language","level":5,"score":0.42443203926086426},{"id":"https://openalex.org/C136764020","wikidata":"https://www.wikidata.org/wiki/Q466","display_name":"World Wide Web","level":1,"score":0.4209812581539154},{"id":"https://openalex.org/C154945302","wikidata":"https://www.wikidata.org/wiki/Q11660","display_name":"Artificial intelligence","level":1,"score":0.2647027373313904},{"id":"https://openalex.org/C534406577","wikidata":"https://www.wikidata.org/wiki/Q7550843","display_name":"Social Semantic Web","level":3,"score":0.20717212557792664},{"id":"https://openalex.org/C147497476","wikidata":"https://www.wikidata.org/wiki/Q54872","display_name":"RDF","level":3,"score":0.19876646995544434},{"id":"https://openalex.org/C148792806","wikidata":"https://www.wikidata.org/wiki/Q7449046","display_name":"Semantic analytics","level":4,"score":0.11614158749580383},{"id":"https://openalex.org/C104317684","wikidata":"https://www.wikidata.org/wiki/Q7187","display_name":"Gene","level":2,"score":0.0},{"id":"https://openalex.org/C185592680","wikidata":"https://www.wikidata.org/wiki/Q2329","display_name":"Chemistry","level":0,"score":0.0},{"id":"https://openalex.org/C138885662","wikidata":"https://www.wikidata.org/wiki/Q5891","display_name":"Philosophy","level":0,"score":0.0},{"id":"https://openalex.org/C55493867","wikidata":"https://www.wikidata.org/wiki/Q7094","display_name":"Biochemistry","level":1,"score":0.0},{"id":"https://openalex.org/C141231307","wikidata":"https://www.wikidata.org/wiki/Q7020","display_name":"Genome","level":3,"score":0.0},{"id":"https://openalex.org/C111472728","wikidata":"https://www.wikidata.org/wiki/Q9471","display_name":"Epistemology","level":1,"score":0.0}],"mesh":[{"descriptor_ui":"D011544","descriptor_name":"Pseudogenes","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D011544","descriptor_name":"Pseudogenes","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D011544","descriptor_name":"Pseudogenes","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D012660","descriptor_name":"Semantics","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D012660","descriptor_name":"Semantics","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D012660","descriptor_name":"Semantics","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D016208","descriptor_name":"Databases, Factual","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D016208","descriptor_name":"Databases, Factual","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D016208","descriptor_name":"Databases, Factual","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D016247","descriptor_name":"Information Storage and Retrieval","qualifier_ui":"Q000379","qualifier_name":"methods","is_major_topic":false},{"descriptor_ui":"D016247","descriptor_name":"Information Storage and Retrieval","qualifier_ui":"Q000379","qualifier_name":"methods","is_major_topic":false},{"descriptor_ui":"D016247","descriptor_name":"Information Storage and Retrieval","qualifier_ui":"Q000379","qualifier_name":"methods","is_major_topic":false},{"descriptor_ui":"D018875","descriptor_name":"Vocabulary, Controlled","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D018875","descriptor_name":"Vocabulary, Controlled","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D018875","descriptor_name":"Vocabulary, Controlled","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D020407","descriptor_name":"Internet","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D020407","descriptor_name":"Internet","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D020407","descriptor_name":"Internet","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false}],"locations_count":3,"locations":[{"id":"doi:10.1093/bioinformatics/btq173","is_oa":true,"landing_page_url":"https://doi.org/10.1093/bioinformatics/btq173","pdf_url":"https://academic.oup.com/bioinformatics/article-pdf/26/12/i71/790058/btq173.pdf","source":{"id":"https://openalex.org/S52395412","display_name":"Bioinformatics","issn_l":"1367-4803","issn":["1367-4803","1367-4811"],"is_oa":false,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310311648","host_organization_name":"Oxford University Press","host_organization_lineage":["https://openalex.org/P4310311648","https://openalex.org/P4310311647"],"host_organization_lineage_names":["Oxford University Press","University of Oxford"],"type":"journal"},"license":"cc-by-nc","license_id":"https://openalex.org/licenses/cc-by-nc","version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Bioinformatics","raw_type":"journal-article"},{"id":"pmid:20529940","is_oa":false,"landing_page_url":"https://pubmed.ncbi.nlm.nih.gov/20529940","pdf_url":null,"source":{"id":"https://openalex.org/S4306525036","display_name":"PubMed","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I1299303238","host_organization_name":"National Institutes of Health","host_organization_lineage":["https://openalex.org/I1299303238"],"host_organization_lineage_names":[],"type":"repository"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Bioinformatics (Oxford, England)","raw_type":null},{"id":"pmh:oai:pubmedcentral.nih.gov:2881358","is_oa":true,"landing_page_url":"https://www.ncbi.nlm.nih.gov/pmc/articles/2881358","pdf_url":null,"source":{"id":"https://openalex.org/S2764455111","display_name":"PubMed Central","issn_l":null,"issn":null,"is_oa":true,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I1299303238","host_organization_name":"National Institutes of Health","host_organization_lineage":["https://openalex.org/I1299303238"],"host_organization_lineage_names":[],"type":"repository"},"license":null,"license_id":null,"version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":"Bioinformatics","raw_type":"Text"}],"best_oa_location":{"id":"doi:10.1093/bioinformatics/btq173","is_oa":true,"landing_page_url":"https://doi.org/10.1093/bioinformatics/btq173","pdf_url":"https://academic.oup.com/bioinformatics/article-pdf/26/12/i71/790058/btq173.pdf","source":{"id":"https://openalex.org/S52395412","display_name":"Bioinformatics","issn_l":"1367-4803","issn":["1367-4803","1367-4811"],"is_oa":false,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310311648","host_organization_name":"Oxford University Press","host_organization_lineage":["https://openalex.org/P4310311648","https://openalex.org/P4310311647"],"host_organization_lineage_names":["Oxford University Press","University of Oxford"],"type":"journal"},"license":"cc-by-nc","license_id":"https://openalex.org/licenses/cc-by-nc","version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Bioinformatics","raw_type":"journal-article"},"sustainable_development_goals":[],"awards":[{"id":"https://openalex.org/G4603702203","display_name":null,"funder_award_id":"P01 DC04732","funder_id":"https://openalex.org/F4320337352","funder_display_name":"National Institute on Deafness and Other Communication Disorders"},{"id":"https://openalex.org/G6223982239","display_name":null,"funder_award_id":"R01 DA021253","funder_id":"https://openalex.org/F4320337347","funder_display_name":"National Institute on Drug Abuse"},{"id":"https://openalex.org/G8488313101","display_name":null,"funder_award_id":"T15 LM007056","funder_id":"https://openalex.org/F4320337372","funder_display_name":"U.S. National Library of Medicine"}],"funders":[{"id":"https://openalex.org/F4320332161","display_name":"National Institutes of Health","ror":"https://ror.org/01cwqze88"},{"id":"https://openalex.org/F4320337347","display_name":"National Institute on Drug Abuse","ror":"https://ror.org/00fq5cm18"},{"id":"https://openalex.org/F4320337352","display_name":"National Institute on Deafness and Other Communication Disorders","ror":"https://ror.org/04mhx6838"},{"id":"https://openalex.org/F4320337372","display_name":"U.S. National Library of Medicine","ror":"https://ror.org/0060t0j89"}],"has_content":{"pdf":true,"grobid_xml":true},"content_urls":{"pdf":"https://content.openalex.org/works/W2171672270.pdf","grobid_xml":"https://content.openalex.org/works/W2171672270.grobid-xml"},"referenced_works_count":20,"referenced_works":["https://openalex.org/W1482585805","https://openalex.org/W1606656316","https://openalex.org/W1968002146","https://openalex.org/W1993180856","https://openalex.org/W2078288474","https://openalex.org/W2091729411","https://openalex.org/W2113142309","https://openalex.org/W2118876599","https://openalex.org/W2123171788","https://openalex.org/W2131581981","https://openalex.org/W2139400351","https://openalex.org/W2144882930","https://openalex.org/W2146222452","https://openalex.org/W2147009493","https://openalex.org/W2151397621","https://openalex.org/W2154829072","https://openalex.org/W2592270044","https://openalex.org/W2798401172","https://openalex.org/W6636271666","https://openalex.org/W6681711896"],"related_works":["https://openalex.org/W1915025741","https://openalex.org/W2949771124","https://openalex.org/W2393349718","https://openalex.org/W1978010177","https://openalex.org/W1675214151","https://openalex.org/W1496823576","https://openalex.org/W2400563611","https://openalex.org/W2801579226","https://openalex.org/W1538256610","https://openalex.org/W2171672270"],"abstract_inverted_index":{"MOTIVATION:":[0],"Recent":[1],"years":[2],"have":[3,102,122],"seen":[4],"the":[5,58,70,77,88,111,124,193],"development":[6],"of":[7,11,26,60,72,79,90,107,136],"a":[8,23,48,73,104,134,156],"wide":[9],"range":[10],"biomedical":[12],"ontologies.":[13],"Notable":[14],"among":[15],"these":[16],"is":[17,180,195],"Sequence":[18],"Ontology":[19],"(SO)":[20],"which":[21,159,190],"offers":[22],"rich":[24],"hierarchy":[25],"terms":[27],"and":[28,50,54,128,145],"relationships":[29,125],"that":[30],"can":[31,55],"be":[32,44,161],"used":[33,97],"to":[34,43,57,115,141,146,163,191],"annotate":[35,147],"genomic":[36],"data.":[37],"Well-designed":[38],"formal":[39,85],"ontologies":[40],"allow":[41],"data":[42],"reasoned":[45],"upon":[46],"in":[47,98,177],"consistent":[49],"logically":[51],"sound":[52],"way":[53],"lead":[56],"discovery":[59],"new":[61],"relationships.":[62],"The":[63,171],"Semantic":[64],"Web":[65],"Rules":[66],"Language":[67],"(SWRL)":[68],"augments":[69],"capabilities":[71],"reasoner":[74],"by":[75],"allowing":[76],"creation":[78],"conditional":[80],"rules.":[81],"To":[82],"date,":[83],"however,":[84],"reasoning,":[86],"especially":[87],"use":[89],"SWRL":[91,140],"rules,":[92],"has":[93],"not":[94],"been":[95],"widely":[96],"biomedicine.":[99],"RESULTS:":[100],"We":[101,131],"built":[103],"knowledge":[105,157,174],"base":[106,158,175],"human":[108,167],"pseudogenes,":[109],"extending":[110],"existing":[112],"SO":[113],"framework":[114],"incorporate":[116],"additional":[117],"attributes.":[118],"In":[119],"particular,":[120],"we":[121,152],"defined":[123],"between":[126],"pseudogenes":[127,149],"segmental":[129],"duplications.":[130],"then":[132],"created":[133],"series":[135],"logical":[137],"rules":[138],"using":[139],"answer":[142],"research":[143],"questions":[144],"our":[148],"appropriately.":[150],"Finally,":[151],"were":[153],"left":[154],"with":[155],"could":[160],"queried":[162],"discover":[164],"information":[165],"about":[166],"pseudogene":[168],"evolution.":[169],"AVAILABILITY:":[170],"fully":[172],"populated":[173],"described":[176],"this":[178,199],"document":[179],"available":[181,197],"for":[182],"download":[183],"from":[184,189],"http://ontology.pseudogene.org.":[185],"A":[186],"SPARQL":[187],"endpoint":[188],"query":[192],"dataset":[194],"also":[196],"at":[198],"location.":[200]},"counts_by_year":[{"year":2020,"cited_by_count":1},{"year":2017,"cited_by_count":1},{"year":2016,"cited_by_count":1},{"year":2015,"cited_by_count":2},{"year":2014,"cited_by_count":4},{"year":2013,"cited_by_count":2},{"year":2012,"cited_by_count":3}],"updated_date":"2026-05-21T06:26:12.895304","created_date":"2025-10-10T00:00:00"}