{"id":"https://openalex.org/W2108693717","doi":"https://doi.org/10.1093/bioinformatics/btq168","title":"NetRaVE: constructing dependency networks using sparse linear regression","display_name":"NetRaVE: constructing dependency networks using sparse linear regression","publication_year":2010,"publication_date":"2010-04-21","ids":{"openalex":"https://openalex.org/W2108693717","doi":"https://doi.org/10.1093/bioinformatics/btq168","mag":"2108693717","pmid":"https://pubmed.ncbi.nlm.nih.gov/20410054"},"language":"en","primary_location":{"id":"doi:10.1093/bioinformatics/btq168","is_oa":true,"landing_page_url":"https://doi.org/10.1093/bioinformatics/btq168","pdf_url":"https://academic.oup.com/bioinformatics/article-pdf/26/12/1576/48857696/bioinformatics_26_12_1576.pdf","source":{"id":"https://openalex.org/S52395412","display_name":"Bioinformatics","issn_l":"1367-4803","issn":["1367-4803","1367-4811"],"is_oa":false,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310311648","host_organization_name":"Oxford University Press","host_organization_lineage":["https://openalex.org/P4310311648","https://openalex.org/P4310311647"],"host_organization_lineage_names":["Oxford University Press","University of Oxford"],"type":"journal"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Bioinformatics","raw_type":"journal-article"},"type":"article","indexed_in":["crossref","doaj","pubmed"],"open_access":{"is_oa":true,"oa_status":"bronze","oa_url":"https://academic.oup.com/bioinformatics/article-pdf/26/12/1576/48857696/bioinformatics_26_12_1576.pdf","any_repository_has_fulltext":false},"authorships":[{"author_position":"first","author":{"id":"https://openalex.org/A5023162602","display_name":"Aloke Phatak","orcid":"https://orcid.org/0000-0002-0637-7461"},"institutions":[{"id":"https://openalex.org/I96673099","display_name":"Technical University of Denmark","ror":"https://ror.org/04qtj9h94","country_code":"DK","type":"education","lineage":["https://openalex.org/I96673099"]},{"id":"https://openalex.org/I1292875679","display_name":"Commonwealth Scientific and Industrial Research Organisation","ror":"https://ror.org/03qn8fb07","country_code":"AU","type":"funder","lineage":["https://openalex.org/I1292875679","https://openalex.org/I2801453606","https://openalex.org/I4387156119"]}],"countries":["AU","DK"],"is_corresponding":true,"raw_author_name":"A. Phatak","raw_affiliation_strings":["1 CSIRO Mathematical & Information Sciences, Private Bag 5, Wembley, WA, Australia, 2 Department of Informatics and Mathematical Modelling, Technical University of Denmark, Building 321, DK-2800 Lyngby, Denmark and 3 CSIRO Mathematical & Information Sciences, Locked Bag 17, North Ryde, NSW, Australia"],"affiliations":[{"raw_affiliation_string":"1 CSIRO Mathematical & Information Sciences, Private Bag 5, Wembley, WA, Australia, 2 Department of Informatics and Mathematical Modelling, Technical University of Denmark, Building 321, DK-2800 Lyngby, Denmark and 3 CSIRO Mathematical & Information Sciences, Locked Bag 17, North Ryde, NSW, Australia","institution_ids":["https://openalex.org/I1292875679","https://openalex.org/I96673099"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5020408181","display_name":"Harri Kiiveri","orcid":"https://orcid.org/0000-0002-5168-4639"},"institutions":[{"id":"https://openalex.org/I96673099","display_name":"Technical University of Denmark","ror":"https://ror.org/04qtj9h94","country_code":"DK","type":"education","lineage":["https://openalex.org/I96673099"]},{"id":"https://openalex.org/I1292875679","display_name":"Commonwealth Scientific and Industrial Research Organisation","ror":"https://ror.org/03qn8fb07","country_code":"AU","type":"funder","lineage":["https://openalex.org/I1292875679","https://openalex.org/I2801453606","https://openalex.org/I4387156119"]}],"countries":["AU","DK"],"is_corresponding":false,"raw_author_name":"H. Kiiveri","raw_affiliation_strings":["1 CSIRO Mathematical & Information Sciences, Private Bag 5, Wembley, WA, Australia, 2 Department of Informatics and Mathematical Modelling, Technical University of Denmark, Building 321, DK-2800 Lyngby, Denmark and 3 CSIRO Mathematical & Information Sciences, Locked Bag 17, North Ryde, NSW, Australia"],"affiliations":[{"raw_affiliation_string":"1 CSIRO Mathematical & Information Sciences, Private Bag 5, Wembley, WA, Australia, 2 Department of Informatics and Mathematical Modelling, Technical University of Denmark, Building 321, DK-2800 Lyngby, Denmark and 3 CSIRO Mathematical & Information Sciences, Locked Bag 17, North Ryde, NSW, Australia","institution_ids":["https://openalex.org/I1292875679","https://openalex.org/I96673099"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5011062522","display_name":"Line Katrine Harder Clemmensen","orcid":"https://orcid.org/0000-0001-5527-5798"},"institutions":[{"id":"https://openalex.org/I96673099","display_name":"Technical University of Denmark","ror":"https://ror.org/04qtj9h94","country_code":"DK","type":"education","lineage":["https://openalex.org/I96673099"]},{"id":"https://openalex.org/I1292875679","display_name":"Commonwealth Scientific and Industrial Research Organisation","ror":"https://ror.org/03qn8fb07","country_code":"AU","type":"funder","lineage":["https://openalex.org/I1292875679","https://openalex.org/I2801453606","https://openalex.org/I4387156119"]}],"countries":["AU","DK"],"is_corresponding":false,"raw_author_name":"L.H. Clemmensen","raw_affiliation_strings":["1 CSIRO Mathematical & Information Sciences, Private Bag 5, Wembley, WA, Australia, 2 Department of Informatics and Mathematical Modelling, Technical University of Denmark, Building 321, DK-2800 Lyngby, Denmark and 3 CSIRO Mathematical & Information Sciences, Locked Bag 17, North Ryde, NSW, Australia"],"affiliations":[{"raw_affiliation_string":"1 CSIRO Mathematical & Information Sciences, Private Bag 5, Wembley, WA, Australia, 2 Department of Informatics and Mathematical Modelling, Technical University of Denmark, Building 321, DK-2800 Lyngby, Denmark and 3 CSIRO Mathematical & Information Sciences, Locked Bag 17, North Ryde, NSW, Australia","institution_ids":["https://openalex.org/I1292875679","https://openalex.org/I96673099"]}]},{"author_position":"last","author":{"id":"https://openalex.org/A5009249608","display_name":"W.J. Wilson","orcid":"https://orcid.org/0000-0001-5658-0997"},"institutions":[{"id":"https://openalex.org/I96673099","display_name":"Technical University of Denmark","ror":"https://ror.org/04qtj9h94","country_code":"DK","type":"education","lineage":["https://openalex.org/I96673099"]},{"id":"https://openalex.org/I1292875679","display_name":"Commonwealth Scientific and Industrial Research Organisation","ror":"https://ror.org/03qn8fb07","country_code":"AU","type":"funder","lineage":["https://openalex.org/I1292875679","https://openalex.org/I2801453606","https://openalex.org/I4387156119"]}],"countries":["AU","DK"],"is_corresponding":false,"raw_author_name":"W.J. Wilson","raw_affiliation_strings":["1 CSIRO Mathematical & Information Sciences, Private Bag 5, Wembley, WA, Australia, 2 Department of Informatics and Mathematical Modelling, Technical University of Denmark, Building 321, DK-2800 Lyngby, Denmark and 3 CSIRO Mathematical & Information Sciences, Locked Bag 17, North Ryde, NSW, Australia"],"affiliations":[{"raw_affiliation_string":"1 CSIRO Mathematical & Information Sciences, Private Bag 5, Wembley, WA, Australia, 2 Department of Informatics and Mathematical Modelling, Technical University of Denmark, Building 321, DK-2800 Lyngby, Denmark and 3 CSIRO Mathematical & Information Sciences, Locked Bag 17, North Ryde, NSW, Australia","institution_ids":["https://openalex.org/I1292875679","https://openalex.org/I96673099"]}]}],"institutions":[],"countries_distinct_count":2,"institutions_distinct_count":4,"corresponding_author_ids":["https://openalex.org/A5023162602"],"corresponding_institution_ids":["https://openalex.org/I1292875679","https://openalex.org/I96673099"],"apc_list":{"value":3618,"currency":"USD","value_usd":3618},"apc_paid":null,"fwci":0.1355,"has_fulltext":false,"cited_by_count":3,"citation_normalized_percentile":{"value":0.54820848,"is_in_top_1_percent":false,"is_in_top_10_percent":false},"cited_by_percentile_year":{"min":90,"max":94},"biblio":{"volume":"26","issue":"12","first_page":"1576","last_page":"1577"},"is_retracted":false,"is_paratext":false,"is_xpac":false,"primary_topic":{"id":"https://openalex.org/T10885","display_name":"Gene expression and cancer classification","score":0.9998000264167786,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},"topics":[{"id":"https://openalex.org/T10885","display_name":"Gene expression and cancer classification","score":0.9998000264167786,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},{"id":"https://openalex.org/T10887","display_name":"Bioinformatics and Genomic Networks","score":0.9995999932289124,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},{"id":"https://openalex.org/T10836","display_name":"Metabolomics and Mass Spectrometry Studies","score":0.9914000034332275,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}}],"keywords":[{"id":"https://openalex.org/keywords/suite","display_name":"Suite","score":0.8172557950019836},{"id":"https://openalex.org/keywords/dependency","display_name":"Dependency (UML)","score":0.8155507445335388},{"id":"https://openalex.org/keywords/computer-science","display_name":"Computer science","score":0.705061674118042},{"id":"https://openalex.org/keywords/regression","display_name":"Regression","score":0.5234231948852539},{"id":"https://openalex.org/keywords/data-mining","display_name":"Data mining","score":0.5088194012641907},{"id":"https://openalex.org/keywords/linear-regression","display_name":"Linear regression","score":0.4578610062599182},{"id":"https://openalex.org/keywords/regression-analysis","display_name":"Regression analysis","score":0.432778924703598},{"id":"https://openalex.org/keywords/microarray-analysis-techniques","display_name":"Microarray analysis techniques","score":0.4213627576828003},{"id":"https://openalex.org/keywords/theoretical-computer-science","display_name":"Theoretical computer science","score":0.33890053629875183},{"id":"https://openalex.org/keywords/machine-learning","display_name":"Machine learning","score":0.2453174889087677},{"id":"https://openalex.org/keywords/artificial-intelligence","display_name":"Artificial intelligence","score":0.2306022047996521},{"id":"https://openalex.org/keywords/gene","display_name":"Gene","score":0.16320735216140747},{"id":"https://openalex.org/keywords/mathematics","display_name":"Mathematics","score":0.15569502115249634},{"id":"https://openalex.org/keywords/statistics","display_name":"Statistics","score":0.14613983035087585},{"id":"https://openalex.org/keywords/biology","display_name":"Biology","score":0.12964484095573425}],"concepts":[{"id":"https://openalex.org/C79581498","wikidata":"https://www.wikidata.org/wiki/Q1367530","display_name":"Suite","level":2,"score":0.8172557950019836},{"id":"https://openalex.org/C19768560","wikidata":"https://www.wikidata.org/wiki/Q320727","display_name":"Dependency (UML)","level":2,"score":0.8155507445335388},{"id":"https://openalex.org/C41008148","wikidata":"https://www.wikidata.org/wiki/Q21198","display_name":"Computer science","level":0,"score":0.705061674118042},{"id":"https://openalex.org/C83546350","wikidata":"https://www.wikidata.org/wiki/Q1139051","display_name":"Regression","level":2,"score":0.5234231948852539},{"id":"https://openalex.org/C124101348","wikidata":"https://www.wikidata.org/wiki/Q172491","display_name":"Data mining","level":1,"score":0.5088194012641907},{"id":"https://openalex.org/C48921125","wikidata":"https://www.wikidata.org/wiki/Q10861030","display_name":"Linear regression","level":2,"score":0.4578610062599182},{"id":"https://openalex.org/C152877465","wikidata":"https://www.wikidata.org/wiki/Q208042","display_name":"Regression analysis","level":2,"score":0.432778924703598},{"id":"https://openalex.org/C8415881","wikidata":"https://www.wikidata.org/wiki/Q6839217","display_name":"Microarray analysis techniques","level":4,"score":0.4213627576828003},{"id":"https://openalex.org/C80444323","wikidata":"https://www.wikidata.org/wiki/Q2878974","display_name":"Theoretical computer science","level":1,"score":0.33890053629875183},{"id":"https://openalex.org/C119857082","wikidata":"https://www.wikidata.org/wiki/Q2539","display_name":"Machine learning","level":1,"score":0.2453174889087677},{"id":"https://openalex.org/C154945302","wikidata":"https://www.wikidata.org/wiki/Q11660","display_name":"Artificial intelligence","level":1,"score":0.2306022047996521},{"id":"https://openalex.org/C104317684","wikidata":"https://www.wikidata.org/wiki/Q7187","display_name":"Gene","level":2,"score":0.16320735216140747},{"id":"https://openalex.org/C33923547","wikidata":"https://www.wikidata.org/wiki/Q395","display_name":"Mathematics","level":0,"score":0.15569502115249634},{"id":"https://openalex.org/C105795698","wikidata":"https://www.wikidata.org/wiki/Q12483","display_name":"Statistics","level":1,"score":0.14613983035087585},{"id":"https://openalex.org/C86803240","wikidata":"https://www.wikidata.org/wiki/Q420","display_name":"Biology","level":0,"score":0.12964484095573425},{"id":"https://openalex.org/C150194340","wikidata":"https://www.wikidata.org/wiki/Q26972","display_name":"Gene expression","level":3,"score":0.0},{"id":"https://openalex.org/C55493867","wikidata":"https://www.wikidata.org/wiki/Q7094","display_name":"Biochemistry","level":1,"score":0.0},{"id":"https://openalex.org/C95457728","wikidata":"https://www.wikidata.org/wiki/Q309","display_name":"History","level":0,"score":0.0},{"id":"https://openalex.org/C166957645","wikidata":"https://www.wikidata.org/wiki/Q23498","display_name":"Archaeology","level":1,"score":0.0}],"mesh":[{"descriptor_ui":"D000465","descriptor_name":"Algorithms","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D000465","descriptor_name":"Algorithms","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D000465","descriptor_name":"Algorithms","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D012984","descriptor_name":"Software","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D012984","descriptor_name":"Software","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D012984","descriptor_name":"Software","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D014584","descriptor_name":"User-Computer Interface","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D014584","descriptor_name":"User-Computer Interface","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D014584","descriptor_name":"User-Computer Interface","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D016014","descriptor_name":"Linear Models","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D016014","descriptor_name":"Linear Models","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D016014","descriptor_name":"Linear Models","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D020411","descriptor_name":"Oligonucleotide Array Sequence Analysis","qualifier_ui":"Q000379","qualifier_name":"methods","is_major_topic":false},{"descriptor_ui":"D020411","descriptor_name":"Oligonucleotide Array Sequence Analysis","qualifier_ui":"Q000379","qualifier_name":"methods","is_major_topic":false},{"descriptor_ui":"D020411","descriptor_name":"Oligonucleotide Array Sequence Analysis","qualifier_ui":"Q000379","qualifier_name":"methods","is_major_topic":false},{"descriptor_ui":"D020869","descriptor_name":"Gene Expression Profiling","qualifier_ui":"Q000379","qualifier_name":"methods","is_major_topic":false},{"descriptor_ui":"D020869","descriptor_name":"Gene Expression Profiling","qualifier_ui":"Q000379","qualifier_name":"methods","is_major_topic":false},{"descriptor_ui":"D020869","descriptor_name":"Gene Expression Profiling","qualifier_ui":"Q000379","qualifier_name":"methods","is_major_topic":false}],"locations_count":4,"locations":[{"id":"doi:10.1093/bioinformatics/btq168","is_oa":true,"landing_page_url":"https://doi.org/10.1093/bioinformatics/btq168","pdf_url":"https://academic.oup.com/bioinformatics/article-pdf/26/12/1576/48857696/bioinformatics_26_12_1576.pdf","source":{"id":"https://openalex.org/S52395412","display_name":"Bioinformatics","issn_l":"1367-4803","issn":["1367-4803","1367-4811"],"is_oa":false,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310311648","host_organization_name":"Oxford University Press","host_organization_lineage":["https://openalex.org/P4310311648","https://openalex.org/P4310311647"],"host_organization_lineage_names":["Oxford University Press","University of Oxford"],"type":"journal"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Bioinformatics","raw_type":"journal-article"},{"id":"pmid:20410054","is_oa":false,"landing_page_url":"https://pubmed.ncbi.nlm.nih.gov/20410054","pdf_url":null,"source":{"id":"https://openalex.org/S4306525036","display_name":"PubMed","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I1299303238","host_organization_name":"National Institutes of Health","host_organization_lineage":["https://openalex.org/I1299303238"],"host_organization_lineage_names":[],"type":"repository"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Bioinformatics (Oxford, England)","raw_type":null},{"id":"pmh:oai:espace.curtin.edu.au:20.500.11937/26062","is_oa":false,"landing_page_url":"http://hdl.handle.net/20.500.11937/26062","pdf_url":null,"source":{"id":"https://openalex.org/S4306401790","display_name":"eSpace (Curtin University)","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I205640436","host_organization_name":"Curtin University","host_organization_lineage":["https://openalex.org/I205640436"],"host_organization_lineage_names":[],"type":"repository"},"license":null,"license_id":null,"version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":null,"raw_type":"Journal Article"},{"id":"pmh:oai:pure.atira.dk:publications/9f0c6fb5-b0a5-4448-94e3-468eac28b6b1","is_oa":false,"landing_page_url":"https://orbit.dtu.dk/en/publications/9f0c6fb5-b0a5-4448-94e3-468eac28b6b1","pdf_url":null,"source":{"id":"https://openalex.org/S4306400705","display_name":"Technical University of Denmark, DTU Orbit (Technical University of Denmark, DTU)","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I96673099","host_organization_name":"Technical University of Denmark","host_organization_lineage":["https://openalex.org/I96673099"],"host_organization_lineage_names":[],"type":"repository"},"license":null,"license_id":null,"version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":"Phatak , A , Kiiveri , H , Clemmensen , L K H &amp; Wilson , W J 2010 , ' NetRaVE: constructing dependency networks using sparse linear regression ' , Bioinformatics , vol. 26 , no. 12 , pp. 1576-1577 . https://doi.org/10.1093/bioinformatics/btq168","raw_type":"article"}],"best_oa_location":{"id":"doi:10.1093/bioinformatics/btq168","is_oa":true,"landing_page_url":"https://doi.org/10.1093/bioinformatics/btq168","pdf_url":"https://academic.oup.com/bioinformatics/article-pdf/26/12/1576/48857696/bioinformatics_26_12_1576.pdf","source":{"id":"https://openalex.org/S52395412","display_name":"Bioinformatics","issn_l":"1367-4803","issn":["1367-4803","1367-4811"],"is_oa":false,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310311648","host_organization_name":"Oxford University Press","host_organization_lineage":["https://openalex.org/P4310311648","https://openalex.org/P4310311647"],"host_organization_lineage_names":["Oxford University Press","University of Oxford"],"type":"journal"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Bioinformatics","raw_type":"journal-article"},"sustainable_development_goals":[],"awards":[],"funders":[],"has_content":{"pdf":true,"grobid_xml":true},"content_urls":{"pdf":"https://content.openalex.org/works/W2108693717.pdf","grobid_xml":"https://content.openalex.org/works/W2108693717.grobid-xml"},"referenced_works_count":8,"referenced_works":["https://openalex.org/W1589308530","https://openalex.org/W2012382065","https://openalex.org/W2045317384","https://openalex.org/W2104928971","https://openalex.org/W2120865735","https://openalex.org/W2152918038","https://openalex.org/W2162370269","https://openalex.org/W4285719527"],"related_works":["https://openalex.org/W4231704780","https://openalex.org/W2083794993","https://openalex.org/W352609212","https://openalex.org/W1511772879","https://openalex.org/W4200340037","https://openalex.org/W4379115841","https://openalex.org/W31220157","https://openalex.org/W2288557197","https://openalex.org/W4233024177","https://openalex.org/W2101914902"],"abstract_inverted_index":{"Supplementary":[0],"data":[1],"are":[2],"available":[3],"at":[4],"Bioinformatics":[5],"online.":[6]},"counts_by_year":[{"year":2018,"cited_by_count":1},{"year":2017,"cited_by_count":1}],"updated_date":"2026-04-04T16:13:02.066488","created_date":"2025-10-10T00:00:00"}
