{"id":"https://openalex.org/W2129075135","doi":"https://doi.org/10.1093/bioinformatics/btq140","title":"A CROC stronger than ROC: measuring, visualizing and optimizing early retrieval","display_name":"A CROC stronger than ROC: measuring, visualizing and optimizing early retrieval","publication_year":2010,"publication_date":"2010-04-07","ids":{"openalex":"https://openalex.org/W2129075135","doi":"https://doi.org/10.1093/bioinformatics/btq140","mag":"2129075135","pmid":"https://pubmed.ncbi.nlm.nih.gov/20378557"},"language":"en","primary_location":{"id":"doi:10.1093/bioinformatics/btq140","is_oa":true,"landing_page_url":"https://doi.org/10.1093/bioinformatics/btq140","pdf_url":"https://academic.oup.com/bioinformatics/article-pdf/26/10/1348/48851619/bioinformatics_26_10_1348.pdf","source":{"id":"https://openalex.org/S52395412","display_name":"Bioinformatics","issn_l":"1367-4803","issn":["1367-4803","1367-4811"],"is_oa":false,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310311648","host_organization_name":"Oxford University Press","host_organization_lineage":["https://openalex.org/P4310311648","https://openalex.org/P4310311647"],"host_organization_lineage_names":["Oxford University Press","University of Oxford"],"type":"journal"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Bioinformatics","raw_type":"journal-article"},"type":"article","indexed_in":["crossref","doaj","pubmed"],"open_access":{"is_oa":true,"oa_status":"bronze","oa_url":"https://academic.oup.com/bioinformatics/article-pdf/26/10/1348/48851619/bioinformatics_26_10_1348.pdf","any_repository_has_fulltext":false},"authorships":[{"author_position":"first","author":{"id":"https://openalex.org/A5086610385","display_name":"S. Joshua Swamidass","orcid":"https://orcid.org/0000-0003-2191-0778"},"institutions":[{"id":"https://openalex.org/I204250578","display_name":"University of California, Irvine","ror":"https://ror.org/04gyf1771","country_code":"US","type":"education","lineage":["https://openalex.org/I204250578"]}],"countries":["US"],"is_corresponding":true,"raw_author_name":"S. Joshua Swamidass","raw_affiliation_strings":["1 Division of Laboratory and Genomic Medicine, Department of Pathology and Immunology, Washington University, St. Louis, MO 63110, 2 Institute for Genomics and Bioinformatics, University of California, Irvine, CA 92697, 3 Department of Immunology and Pathology, Washington University, Saint Louis, MO 63110 and 4 Department of Biological Chemistry, University of California, Irvine, CA 92697, USA"],"affiliations":[{"raw_affiliation_string":"1 Division of Laboratory and Genomic Medicine, Department of Pathology and Immunology, Washington University, St. Louis, MO 63110, 2 Institute for Genomics and Bioinformatics, University of California, Irvine, CA 92697, 3 Department of Immunology and Pathology, Washington University, Saint Louis, MO 63110 and 4 Department of Biological Chemistry, University of California, Irvine, CA 92697, USA","institution_ids":["https://openalex.org/I204250578"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5114376683","display_name":"Chlo\u00e9\u2010Agathe Azencott","orcid":"https://orcid.org/0000-0003-1003-301X"},"institutions":[{"id":"https://openalex.org/I204250578","display_name":"University of California, Irvine","ror":"https://ror.org/04gyf1771","country_code":"US","type":"education","lineage":["https://openalex.org/I204250578"]}],"countries":["US"],"is_corresponding":false,"raw_author_name":"Chlo\u00e9-Agathe Azencott","raw_affiliation_strings":["1 Division of Laboratory and Genomic Medicine, Department of Pathology and Immunology, Washington University, St. Louis, MO 63110, 2 Institute for Genomics and Bioinformatics, University of California, Irvine, CA 92697, 3 Department of Immunology and Pathology, Washington University, Saint Louis, MO 63110 and 4 Department of Biological Chemistry, University of California, Irvine, CA 92697, USA"],"affiliations":[{"raw_affiliation_string":"1 Division of Laboratory and Genomic Medicine, Department of Pathology and Immunology, Washington University, St. Louis, MO 63110, 2 Institute for Genomics and Bioinformatics, University of California, Irvine, CA 92697, 3 Department of Immunology and Pathology, Washington University, Saint Louis, MO 63110 and 4 Department of Biological Chemistry, University of California, Irvine, CA 92697, USA","institution_ids":["https://openalex.org/I204250578"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5054638814","display_name":"Kenneth Daily","orcid":"https://orcid.org/0000-0001-5729-7376"},"institutions":[{"id":"https://openalex.org/I204250578","display_name":"University of California, Irvine","ror":"https://ror.org/04gyf1771","country_code":"US","type":"education","lineage":["https://openalex.org/I204250578"]}],"countries":["US"],"is_corresponding":false,"raw_author_name":"Kenny Daily","raw_affiliation_strings":["1 Division of Laboratory and Genomic Medicine, Department of Pathology and Immunology, Washington University, St. Louis, MO 63110, 2 Institute for Genomics and Bioinformatics, University of California, Irvine, CA 92697, 3 Department of Immunology and Pathology, Washington University, Saint Louis, MO 63110 and 4 Department of Biological Chemistry, University of California, Irvine, CA 92697, USA"],"affiliations":[{"raw_affiliation_string":"1 Division of Laboratory and Genomic Medicine, Department of Pathology and Immunology, Washington University, St. Louis, MO 63110, 2 Institute for Genomics and Bioinformatics, University of California, Irvine, CA 92697, 3 Department of Immunology and Pathology, Washington University, Saint Louis, MO 63110 and 4 Department of Biological Chemistry, University of California, Irvine, CA 92697, USA","institution_ids":["https://openalex.org/I204250578"]}]},{"author_position":"last","author":{"id":"https://openalex.org/A5088813478","display_name":"Pierre Baldi","orcid":"https://orcid.org/0000-0001-8752-4664"},"institutions":[{"id":"https://openalex.org/I204250578","display_name":"University of California, Irvine","ror":"https://ror.org/04gyf1771","country_code":"US","type":"education","lineage":["https://openalex.org/I204250578"]}],"countries":["US"],"is_corresponding":false,"raw_author_name":"Pierre Baldi","raw_affiliation_strings":["1 Division of Laboratory and Genomic Medicine, Department of Pathology and Immunology, Washington University, St. Louis, MO 63110, 2 Institute for Genomics and Bioinformatics, University of California, Irvine, CA 92697, 3 Department of Immunology and Pathology, Washington University, Saint Louis, MO 63110 and 4 Department of Biological Chemistry, University of California, Irvine, CA 92697, USA"],"affiliations":[{"raw_affiliation_string":"1 Division of Laboratory and Genomic Medicine, Department of Pathology and Immunology, Washington University, St. Louis, MO 63110, 2 Institute for Genomics and Bioinformatics, University of California, Irvine, CA 92697, 3 Department of Immunology and Pathology, Washington University, Saint Louis, MO 63110 and 4 Department of Biological Chemistry, University of California, Irvine, CA 92697, USA","institution_ids":["https://openalex.org/I204250578"]}]}],"institutions":[],"countries_distinct_count":1,"institutions_distinct_count":4,"corresponding_author_ids":["https://openalex.org/A5086610385"],"corresponding_institution_ids":["https://openalex.org/I204250578"],"apc_list":{"value":3618,"currency":"USD","value_usd":3618},"apc_paid":null,"fwci":2.8464,"has_fulltext":true,"cited_by_count":118,"citation_normalized_percentile":{"value":0.90982835,"is_in_top_1_percent":false,"is_in_top_10_percent":true},"cited_by_percentile_year":{"min":96,"max":100},"biblio":{"volume":"26","issue":"10","first_page":"1348","last_page":"1356"},"is_retracted":false,"is_paratext":false,"is_xpac":false,"primary_topic":{"id":"https://openalex.org/T11710","display_name":"Biomedical Text Mining and Ontologies","score":0.9854000210762024,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},"topics":[{"id":"https://openalex.org/T11710","display_name":"Biomedical Text Mining and Ontologies","score":0.9854000210762024,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},{"id":"https://openalex.org/T11719","display_name":"Data Quality and Management","score":0.9818000197410583,"subfield":{"id":"https://openalex.org/subfields/1803","display_name":"Management Science and Operations Research"},"field":{"id":"https://openalex.org/fields/18","display_name":"Decision Sciences"},"domain":{"id":"https://openalex.org/domains/2","display_name":"Social Sciences"}},{"id":"https://openalex.org/T13702","display_name":"Machine Learning in Healthcare","score":0.978600025177002,"subfield":{"id":"https://openalex.org/subfields/1702","display_name":"Artificial Intelligence"},"field":{"id":"https://openalex.org/fields/17","display_name":"Computer Science"},"domain":{"id":"https://openalex.org/domains/3","display_name":"Physical Sciences"}}],"keywords":[{"id":"https://openalex.org/keywords/computer-science","display_name":"Computer science","score":0.6522122025489807},{"id":"https://openalex.org/keywords/information-retrieval","display_name":"Information retrieval","score":0.41794461011886597},{"id":"https://openalex.org/keywords/data-mining","display_name":"Data mining","score":0.4063307046890259},{"id":"https://openalex.org/keywords/artificial-intelligence","display_name":"Artificial intelligence","score":0.36334967613220215}],"concepts":[{"id":"https://openalex.org/C41008148","wikidata":"https://www.wikidata.org/wiki/Q21198","display_name":"Computer science","level":0,"score":0.6522122025489807},{"id":"https://openalex.org/C23123220","wikidata":"https://www.wikidata.org/wiki/Q816826","display_name":"Information retrieval","level":1,"score":0.41794461011886597},{"id":"https://openalex.org/C124101348","wikidata":"https://www.wikidata.org/wiki/Q172491","display_name":"Data mining","level":1,"score":0.4063307046890259},{"id":"https://openalex.org/C154945302","wikidata":"https://www.wikidata.org/wiki/Q11660","display_name":"Artificial intelligence","level":1,"score":0.36334967613220215}],"mesh":[{"descriptor_ui":"D000465","descriptor_name":"Algorithms","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D000465","descriptor_name":"Algorithms","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D000465","descriptor_name":"Algorithms","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D012372","descriptor_name":"ROC Curve","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D012372","descriptor_name":"ROC Curve","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D012372","descriptor_name":"ROC Curve","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D012984","descriptor_name":"Software","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D012984","descriptor_name":"Software","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D012984","descriptor_name":"Software","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D015233","descriptor_name":"Models, Statistical","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D015233","descriptor_name":"Models, Statistical","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D015233","descriptor_name":"Models, Statistical","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D019295","descriptor_name":"Computational Biology","qualifier_ui":"Q000379","qualifier_name":"methods","is_major_topic":false},{"descriptor_ui":"D019295","descriptor_name":"Computational Biology","qualifier_ui":"Q000379","qualifier_name":"methods","is_major_topic":false},{"descriptor_ui":"D019295","descriptor_name":"Computational Biology","qualifier_ui":"Q000379","qualifier_name":"methods","is_major_topic":false},{"descriptor_ui":"D019540","descriptor_name":"Area Under Curve","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D019540","descriptor_name":"Area Under Curve","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D019540","descriptor_name":"Area Under Curve","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D055808","descriptor_name":"Drug Discovery","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D055808","descriptor_name":"Drug Discovery","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D055808","descriptor_name":"Drug Discovery","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false}],"locations_count":5,"locations":[{"id":"doi:10.1093/bioinformatics/btq140","is_oa":true,"landing_page_url":"https://doi.org/10.1093/bioinformatics/btq140","pdf_url":"https://academic.oup.com/bioinformatics/article-pdf/26/10/1348/48851619/bioinformatics_26_10_1348.pdf","source":{"id":"https://openalex.org/S52395412","display_name":"Bioinformatics","issn_l":"1367-4803","issn":["1367-4803","1367-4811"],"is_oa":false,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310311648","host_organization_name":"Oxford University Press","host_organization_lineage":["https://openalex.org/P4310311648","https://openalex.org/P4310311647"],"host_organization_lineage_names":["Oxford University Press","University of Oxford"],"type":"journal"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Bioinformatics","raw_type":"journal-article"},{"id":"pmid:20378557","is_oa":false,"landing_page_url":"https://pubmed.ncbi.nlm.nih.gov/20378557","pdf_url":null,"source":{"id":"https://openalex.org/S4306525036","display_name":"PubMed","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I1299303238","host_organization_name":"National Institutes of Health","host_organization_lineage":["https://openalex.org/I1299303238"],"host_organization_lineage_names":[],"type":"repository"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Bioinformatics (Oxford, England)","raw_type":null},{"id":"pmh:oai:CiteSeerX.psu:10.1.1.698.8929","is_oa":false,"landing_page_url":"http://citeseerx.ist.psu.edu/viewdoc/summary?doi=10.1.1.698.8929","pdf_url":null,"source":null,"license":null,"license_id":null,"version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":"http://www.igb.uci.edu/%7Epfbaldi/download/download.inc.php?pid%3D225","raw_type":"text"},{"id":"pmh:oai:CiteSeerX.psu:10.1.1.966.4077","is_oa":false,"landing_page_url":"http://citeseerx.ist.psu.edu/viewdoc/summary?doi=10.1.1.966.4077","pdf_url":null,"source":null,"license":null,"license_id":null,"version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":"http://bioinformatics.oxfordjournals.org/content/early/2010/04/07/bioinformatics.btq140.full.pdf","raw_type":"text"},{"id":"pmh:oai:europepmc.org:2103300","is_oa":false,"landing_page_url":"https://www.ncbi.nlm.nih.gov/pmc/articles/2865862","pdf_url":null,"source":{"id":"https://openalex.org/S4306400806","display_name":"Europe PMC (PubMed Central)","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I1303153112","host_organization_name":"European Bioinformatics Institute","host_organization_lineage":["https://openalex.org/I1303153112"],"host_organization_lineage_names":[],"type":"repository"},"license":null,"license_id":null,"version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":null,"raw_type":"Text"}],"best_oa_location":{"id":"doi:10.1093/bioinformatics/btq140","is_oa":true,"landing_page_url":"https://doi.org/10.1093/bioinformatics/btq140","pdf_url":"https://academic.oup.com/bioinformatics/article-pdf/26/10/1348/48851619/bioinformatics_26_10_1348.pdf","source":{"id":"https://openalex.org/S52395412","display_name":"Bioinformatics","issn_l":"1367-4803","issn":["1367-4803","1367-4811"],"is_oa":false,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310311648","host_organization_name":"Oxford University Press","host_organization_lineage":["https://openalex.org/P4310311648","https://openalex.org/P4310311647"],"host_organization_lineage_names":["Oxford University Press","University of Oxford"],"type":"journal"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Bioinformatics","raw_type":"journal-article"},"sustainable_development_goals":[{"id":"https://metadata.un.org/sdg/10","score":0.6600000262260437,"display_name":"Reduced inequalities"}],"awards":[{"id":"https://openalex.org/G2890776206","display_name":"Large Scale Empirical Validation of the Aspect-Oriented Design Hypothesis","funder_award_id":"0725370","funder_id":"https://openalex.org/F4320306076","funder_display_name":"National Science Foundation"},{"id":"https://openalex.org/G2939380823","display_name":null,"funder_award_id":"CCF-0725370","funder_id":"https://openalex.org/F4320306076","funder_display_name":"National Science Foundation"},{"id":"https://openalex.org/G6144905611","display_name":null,"funder_award_id":"IIS-0513376","funder_id":"https://openalex.org/F4320306076","funder_display_name":"National Science Foundation"},{"id":"https://openalex.org/G6894402473","display_name":null,"funder_award_id":"Fellowship","funder_id":"https://openalex.org/F4320306076","funder_display_name":"National Science Foundation"},{"id":"https://openalex.org/G7355214454","display_name":"Acquisition of Cluster and Server for Computational Biology at the University of California, Irvine","funder_award_id":"0321390","funder_id":"https://openalex.org/F4320306076","funder_display_name":"National Science Foundation"}],"funders":[{"id":"https://openalex.org/F4320306076","display_name":"National Science Foundation","ror":"https://ror.org/021nxhr62"},{"id":"https://openalex.org/F4320332161","display_name":"National Institutes of Health","ror":"https://ror.org/01cwqze88"}],"has_content":{"grobid_xml":true,"pdf":true},"content_urls":{"pdf":"https://content.openalex.org/works/W2129075135.pdf","grobid_xml":"https://content.openalex.org/works/W2129075135.grobid-xml"},"referenced_works_count":19,"referenced_works":["https://openalex.org/W1531524766","https://openalex.org/W1875906722","https://openalex.org/W1970208561","https://openalex.org/W1992095612","https://openalex.org/W2000541041","https://openalex.org/W2003752196","https://openalex.org/W2010700988","https://openalex.org/W2042110087","https://openalex.org/W2055491900","https://openalex.org/W2060097376","https://openalex.org/W2071658986","https://openalex.org/W2107432340","https://openalex.org/W2135835957","https://openalex.org/W2137262074","https://openalex.org/W2155741020","https://openalex.org/W2176720124","https://openalex.org/W2200810672","https://openalex.org/W2492427238","https://openalex.org/W6650525289"],"related_works":["https://openalex.org/W2748952813","https://openalex.org/W2390279801","https://openalex.org/W2358668433","https://openalex.org/W2376932109","https://openalex.org/W2001405890","https://openalex.org/W2382290278","https://openalex.org/W2478288626","https://openalex.org/W2350741829","https://openalex.org/W2530322880","https://openalex.org/W1596801655"],"abstract_inverted_index":{"Datasets":[0],"are":[1,14],"publicly":[2],"available.":[3],"Python":[4],"code":[5],"and":[6,12],"command-line":[7],"utilities":[8],"implementing":[9],"CROC":[10],"curves":[11],"metrics":[13],"available":[15],"at":[16],"http://pypi.python.org/pypi/CROC/":[17],"CONTACT:":[18],"pfbaldi@ics.uci.edu":[19]},"counts_by_year":[{"year":2026,"cited_by_count":1},{"year":2025,"cited_by_count":3},{"year":2024,"cited_by_count":6},{"year":2023,"cited_by_count":4},{"year":2022,"cited_by_count":8},{"year":2021,"cited_by_count":8},{"year":2020,"cited_by_count":6},{"year":2019,"cited_by_count":6},{"year":2018,"cited_by_count":10},{"year":2017,"cited_by_count":8},{"year":2016,"cited_by_count":10},{"year":2015,"cited_by_count":11},{"year":2014,"cited_by_count":16},{"year":2013,"cited_by_count":6},{"year":2012,"cited_by_count":8}],"updated_date":"2026-04-10T15:06:20.359241","created_date":"2025-10-10T00:00:00"}
