{"id":"https://openalex.org/W2097577460","doi":"https://doi.org/10.1093/bioinformatics/btq133","title":"SICAGO: Semi-supervised cluster analysis using semantic distance between gene pairs in Gene Ontology","display_name":"SICAGO: Semi-supervised cluster analysis using semantic distance between gene pairs in Gene Ontology","publication_year":2010,"publication_date":"2010-03-26","ids":{"openalex":"https://openalex.org/W2097577460","doi":"https://doi.org/10.1093/bioinformatics/btq133","mag":"2097577460","pmid":"https://pubmed.ncbi.nlm.nih.gov/20348546"},"language":"en","primary_location":{"id":"doi:10.1093/bioinformatics/btq133","is_oa":true,"landing_page_url":"https://doi.org/10.1093/bioinformatics/btq133","pdf_url":"https://academic.oup.com/bioinformatics/article-pdf/26/10/1384/480575/btq133.pdf","source":{"id":"https://openalex.org/S52395412","display_name":"Bioinformatics","issn_l":"1367-4803","issn":["1367-4803","1367-4811"],"is_oa":false,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310311648","host_organization_name":"Oxford University Press","host_organization_lineage":["https://openalex.org/P4310311648","https://openalex.org/P4310311647"],"host_organization_lineage_names":["Oxford University Press","University of Oxford"],"type":"journal"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Bioinformatics","raw_type":"journal-article"},"type":"article","indexed_in":["crossref","doaj","pubmed"],"open_access":{"is_oa":true,"oa_status":"bronze","oa_url":"https://academic.oup.com/bioinformatics/article-pdf/26/10/1384/480575/btq133.pdf","any_repository_has_fulltext":false},"authorships":[{"author_position":"first","author":{"id":"https://openalex.org/A5085958723","display_name":"Bo\u2010Yeong Kang","orcid":"https://orcid.org/0000-0002-0546-7457"},"institutions":[{"id":"https://openalex.org/I31419693","display_name":"Kyungpook National University","ror":"https://ror.org/040c17130","country_code":"KR","type":"education","lineage":["https://openalex.org/I31419693"]},{"id":"https://openalex.org/I67900169","display_name":"Chung-Ang University","ror":"https://ror.org/01r024a98","country_code":"KR","type":"education","lineage":["https://openalex.org/I67900169"]}],"countries":["KR"],"is_corresponding":true,"raw_author_name":"Bo-Yeong Kang","raw_affiliation_strings":["1 School of Mechanical Engineering, Kyungpook National University, 1370 Sankyuk-dong, Buk-gu, Daegu 702-701 and 2 School of Computer Science and Engineering, Chung-Ang University, 221 Heukseok-dong, Dongjak-gu, Seoul 156-756, Korea"],"affiliations":[{"raw_affiliation_string":"1 School of Mechanical Engineering, Kyungpook National University, 1370 Sankyuk-dong, Buk-gu, Daegu 702-701 and 2 School of Computer Science and Engineering, Chung-Ang University, 221 Heukseok-dong, Dongjak-gu, Seoul 156-756, Korea","institution_ids":["https://openalex.org/I67900169","https://openalex.org/I31419693"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5109462873","display_name":"Song Ko","orcid":null},"institutions":[{"id":"https://openalex.org/I31419693","display_name":"Kyungpook National University","ror":"https://ror.org/040c17130","country_code":"KR","type":"education","lineage":["https://openalex.org/I31419693"]},{"id":"https://openalex.org/I67900169","display_name":"Chung-Ang University","ror":"https://ror.org/01r024a98","country_code":"KR","type":"education","lineage":["https://openalex.org/I67900169"]}],"countries":["KR"],"is_corresponding":false,"raw_author_name":"Song Ko","raw_affiliation_strings":["1 School of Mechanical Engineering, Kyungpook National University, 1370 Sankyuk-dong, Buk-gu, Daegu 702-701 and 2 School of Computer Science and Engineering, Chung-Ang University, 221 Heukseok-dong, Dongjak-gu, Seoul 156-756, Korea"],"affiliations":[{"raw_affiliation_string":"1 School of Mechanical Engineering, Kyungpook National University, 1370 Sankyuk-dong, Buk-gu, Daegu 702-701 and 2 School of Computer Science and Engineering, Chung-Ang University, 221 Heukseok-dong, Dongjak-gu, Seoul 156-756, Korea","institution_ids":["https://openalex.org/I67900169","https://openalex.org/I31419693"]}]},{"author_position":"last","author":{"id":"https://openalex.org/A5100764464","display_name":"Dae\u2010Won Kim","orcid":"https://orcid.org/0000-0001-7124-1141"},"institutions":[{"id":"https://openalex.org/I67900169","display_name":"Chung-Ang University","ror":"https://ror.org/01r024a98","country_code":"KR","type":"education","lineage":["https://openalex.org/I67900169"]},{"id":"https://openalex.org/I31419693","display_name":"Kyungpook National University","ror":"https://ror.org/040c17130","country_code":"KR","type":"education","lineage":["https://openalex.org/I31419693"]}],"countries":["KR"],"is_corresponding":false,"raw_author_name":"Dae-Won Kim","raw_affiliation_strings":["1 School of Mechanical Engineering, Kyungpook National University, 1370 Sankyuk-dong, Buk-gu, Daegu 702-701 and 2 School of Computer Science and Engineering, Chung-Ang University, 221 Heukseok-dong, Dongjak-gu, Seoul 156-756, Korea"],"affiliations":[{"raw_affiliation_string":"1 School of Mechanical Engineering, Kyungpook National University, 1370 Sankyuk-dong, Buk-gu, Daegu 702-701 and 2 School of Computer Science and Engineering, Chung-Ang University, 221 Heukseok-dong, Dongjak-gu, Seoul 156-756, Korea","institution_ids":["https://openalex.org/I67900169","https://openalex.org/I31419693"]}]}],"institutions":[],"countries_distinct_count":1,"institutions_distinct_count":3,"corresponding_author_ids":["https://openalex.org/A5085958723"],"corresponding_institution_ids":["https://openalex.org/I31419693","https://openalex.org/I67900169"],"apc_list":{"value":3618,"currency":"USD","value_usd":3618},"apc_paid":null,"fwci":0.9252,"has_fulltext":false,"cited_by_count":16,"citation_normalized_percentile":{"value":0.73709659,"is_in_top_1_percent":false,"is_in_top_10_percent":false},"cited_by_percentile_year":{"min":89,"max":98},"biblio":{"volume":"26","issue":"10","first_page":"1384","last_page":"1385"},"is_retracted":false,"is_paratext":false,"is_xpac":false,"primary_topic":{"id":"https://openalex.org/T10887","display_name":"Bioinformatics and Genomic Networks","score":0.9997000098228455,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},"topics":[{"id":"https://openalex.org/T10887","display_name":"Bioinformatics and Genomic Networks","score":0.9997000098228455,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},{"id":"https://openalex.org/T10885","display_name":"Gene expression and cancer classification","score":0.9995999932289124,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},{"id":"https://openalex.org/T11710","display_name":"Biomedical Text Mining and Ontologies","score":0.9740999937057495,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}}],"keywords":[{"id":"https://openalex.org/keywords/gene-ontology","display_name":"Gene ontology","score":0.8198103904724121},{"id":"https://openalex.org/keywords/cluster-analysis","display_name":"Cluster analysis","score":0.7575956583023071},{"id":"https://openalex.org/keywords/computer-science","display_name":"Computer science","score":0.7342870235443115},{"id":"https://openalex.org/keywords/ontology","display_name":"Ontology","score":0.7207448482513428},{"id":"https://openalex.org/keywords/cluster","display_name":"Cluster (spacecraft)","score":0.520828366279602},{"id":"https://openalex.org/keywords/semantic-similarity","display_name":"Semantic similarity","score":0.5142537951469421},{"id":"https://openalex.org/keywords/data-mining","display_name":"Data mining","score":0.46680667996406555},{"id":"https://openalex.org/keywords/software","display_name":"Software","score":0.422929584980011},{"id":"https://openalex.org/keywords/artificial-intelligence","display_name":"Artificial intelligence","score":0.42165112495422363},{"id":"https://openalex.org/keywords/gene","display_name":"Gene","score":0.419320285320282},{"id":"https://openalex.org/keywords/natural-language-processing","display_name":"Natural language processing","score":0.3791186213493347},{"id":"https://openalex.org/keywords/information-retrieval","display_name":"Information retrieval","score":0.34447211027145386},{"id":"https://openalex.org/keywords/biology","display_name":"Biology","score":0.12232983112335205},{"id":"https://openalex.org/keywords/gene-expression","display_name":"Gene expression","score":0.11796599626541138},{"id":"https://openalex.org/keywords/genetics","display_name":"Genetics","score":0.08820635080337524}],"concepts":[{"id":"https://openalex.org/C2987395477","wikidata":"https://www.wikidata.org/wiki/Q135085","display_name":"Gene ontology","level":4,"score":0.8198103904724121},{"id":"https://openalex.org/C73555534","wikidata":"https://www.wikidata.org/wiki/Q622825","display_name":"Cluster analysis","level":2,"score":0.7575956583023071},{"id":"https://openalex.org/C41008148","wikidata":"https://www.wikidata.org/wiki/Q21198","display_name":"Computer science","level":0,"score":0.7342870235443115},{"id":"https://openalex.org/C25810664","wikidata":"https://www.wikidata.org/wiki/Q44325","display_name":"Ontology","level":2,"score":0.7207448482513428},{"id":"https://openalex.org/C164866538","wikidata":"https://www.wikidata.org/wiki/Q367351","display_name":"Cluster (spacecraft)","level":2,"score":0.520828366279602},{"id":"https://openalex.org/C130318100","wikidata":"https://www.wikidata.org/wiki/Q2268914","display_name":"Semantic similarity","level":2,"score":0.5142537951469421},{"id":"https://openalex.org/C124101348","wikidata":"https://www.wikidata.org/wiki/Q172491","display_name":"Data mining","level":1,"score":0.46680667996406555},{"id":"https://openalex.org/C2777904410","wikidata":"https://www.wikidata.org/wiki/Q7397","display_name":"Software","level":2,"score":0.422929584980011},{"id":"https://openalex.org/C154945302","wikidata":"https://www.wikidata.org/wiki/Q11660","display_name":"Artificial intelligence","level":1,"score":0.42165112495422363},{"id":"https://openalex.org/C104317684","wikidata":"https://www.wikidata.org/wiki/Q7187","display_name":"Gene","level":2,"score":0.419320285320282},{"id":"https://openalex.org/C204321447","wikidata":"https://www.wikidata.org/wiki/Q30642","display_name":"Natural language processing","level":1,"score":0.3791186213493347},{"id":"https://openalex.org/C23123220","wikidata":"https://www.wikidata.org/wiki/Q816826","display_name":"Information retrieval","level":1,"score":0.34447211027145386},{"id":"https://openalex.org/C86803240","wikidata":"https://www.wikidata.org/wiki/Q420","display_name":"Biology","level":0,"score":0.12232983112335205},{"id":"https://openalex.org/C150194340","wikidata":"https://www.wikidata.org/wiki/Q26972","display_name":"Gene expression","level":3,"score":0.11796599626541138},{"id":"https://openalex.org/C54355233","wikidata":"https://www.wikidata.org/wiki/Q7162","display_name":"Genetics","level":1,"score":0.08820635080337524},{"id":"https://openalex.org/C111472728","wikidata":"https://www.wikidata.org/wiki/Q9471","display_name":"Epistemology","level":1,"score":0.0},{"id":"https://openalex.org/C199360897","wikidata":"https://www.wikidata.org/wiki/Q9143","display_name":"Programming language","level":1,"score":0.0},{"id":"https://openalex.org/C138885662","wikidata":"https://www.wikidata.org/wiki/Q5891","display_name":"Philosophy","level":0,"score":0.0}],"mesh":[{"descriptor_ui":"D000465","descriptor_name":"Algorithms","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D000465","descriptor_name":"Algorithms","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D000465","descriptor_name":"Algorithms","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D012984","descriptor_name":"Software","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D012984","descriptor_name":"Software","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D012984","descriptor_name":"Software","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D014584","descriptor_name":"User-Computer Interface","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D014584","descriptor_name":"User-Computer Interface","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D014584","descriptor_name":"User-Computer Interface","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D016000","descriptor_name":"Cluster Analysis","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D016000","descriptor_name":"Cluster Analysis","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D016000","descriptor_name":"Cluster Analysis","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D020869","descriptor_name":"Gene Expression Profiling","qualifier_ui":"Q000379","qualifier_name":"methods","is_major_topic":false},{"descriptor_ui":"D020869","descriptor_name":"Gene Expression Profiling","qualifier_ui":"Q000379","qualifier_name":"methods","is_major_topic":false},{"descriptor_ui":"D020869","descriptor_name":"Gene Expression Profiling","qualifier_ui":"Q000379","qualifier_name":"methods","is_major_topic":false},{"descriptor_ui":"D030541","descriptor_name":"Databases, Genetic","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D030541","descriptor_name":"Databases, Genetic","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D030541","descriptor_name":"Databases, Genetic","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false}],"locations_count":2,"locations":[{"id":"doi:10.1093/bioinformatics/btq133","is_oa":true,"landing_page_url":"https://doi.org/10.1093/bioinformatics/btq133","pdf_url":"https://academic.oup.com/bioinformatics/article-pdf/26/10/1384/480575/btq133.pdf","source":{"id":"https://openalex.org/S52395412","display_name":"Bioinformatics","issn_l":"1367-4803","issn":["1367-4803","1367-4811"],"is_oa":false,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310311648","host_organization_name":"Oxford University Press","host_organization_lineage":["https://openalex.org/P4310311648","https://openalex.org/P4310311647"],"host_organization_lineage_names":["Oxford University Press","University of Oxford"],"type":"journal"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Bioinformatics","raw_type":"journal-article"},{"id":"pmid:20348546","is_oa":false,"landing_page_url":"https://pubmed.ncbi.nlm.nih.gov/20348546","pdf_url":null,"source":{"id":"https://openalex.org/S4306525036","display_name":"PubMed","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I1299303238","host_organization_name":"National Institutes of Health","host_organization_lineage":["https://openalex.org/I1299303238"],"host_organization_lineage_names":[],"type":"repository"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Bioinformatics (Oxford, England)","raw_type":null}],"best_oa_location":{"id":"doi:10.1093/bioinformatics/btq133","is_oa":true,"landing_page_url":"https://doi.org/10.1093/bioinformatics/btq133","pdf_url":"https://academic.oup.com/bioinformatics/article-pdf/26/10/1384/480575/btq133.pdf","source":{"id":"https://openalex.org/S52395412","display_name":"Bioinformatics","issn_l":"1367-4803","issn":["1367-4803","1367-4811"],"is_oa":false,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310311648","host_organization_name":"Oxford University Press","host_organization_lineage":["https://openalex.org/P4310311648","https://openalex.org/P4310311647"],"host_organization_lineage_names":["Oxford University Press","University of Oxford"],"type":"journal"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Bioinformatics","raw_type":"journal-article"},"sustainable_development_goals":[],"awards":[],"funders":[],"has_content":{"grobid_xml":true,"pdf":true},"content_urls":{"pdf":"https://content.openalex.org/works/W2097577460.pdf","grobid_xml":"https://content.openalex.org/works/W2097577460.grobid-xml"},"referenced_works_count":20,"referenced_works":["https://openalex.org/W1647729745","https://openalex.org/W2055867223","https://openalex.org/W2100935296","https://openalex.org/W2103453943","https://openalex.org/W2105712639","https://openalex.org/W2109174028","https://openalex.org/W2117805756","https://openalex.org/W2126225210","https://openalex.org/W2127563440","https://openalex.org/W2142460132","https://openalex.org/W2149097927","https://openalex.org/W2150926065","https://openalex.org/W2157911533","https://openalex.org/W2159917467","https://openalex.org/W2162972849","https://openalex.org/W2531563875","https://openalex.org/W2613830568","https://openalex.org/W6636975626","https://openalex.org/W6675339850","https://openalex.org/W6677712588"],"related_works":["https://openalex.org/W2376314740","https://openalex.org/W3107474891","https://openalex.org/W1606406758","https://openalex.org/W2393185060","https://openalex.org/W2120460904","https://openalex.org/W180507639","https://openalex.org/W1975174578","https://openalex.org/W1140107","https://openalex.org/W2347278957","https://openalex.org/W1524308472"],"abstract_inverted_index":{"dwkim@cau.ac.kr":[0]},"counts_by_year":[{"year":2021,"cited_by_count":1},{"year":2017,"cited_by_count":1},{"year":2016,"cited_by_count":2},{"year":2015,"cited_by_count":4},{"year":2014,"cited_by_count":1},{"year":2012,"cited_by_count":4}],"updated_date":"2025-11-06T03:46:38.306776","created_date":"2025-10-10T00:00:00"}
