{"id":"https://openalex.org/W2138770756","doi":"https://doi.org/10.1093/bioinformatics/btq100","title":"ProBiS algorithm for detection of structurally similar protein binding sites by local structural alignment","display_name":"ProBiS algorithm for detection of structurally similar protein binding sites by local structural alignment","publication_year":2010,"publication_date":"2010-03-19","ids":{"openalex":"https://openalex.org/W2138770756","doi":"https://doi.org/10.1093/bioinformatics/btq100","mag":"2138770756","pmid":"https://pubmed.ncbi.nlm.nih.gov/20305268"},"language":"en","primary_location":{"id":"doi:10.1093/bioinformatics/btq100","is_oa":false,"landing_page_url":"https://doi.org/10.1093/bioinformatics/btq100","pdf_url":null,"source":{"id":"https://openalex.org/S52395412","display_name":"Bioinformatics","issn_l":"1367-4803","issn":["1367-4803","1367-4811"],"is_oa":false,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310311648","host_organization_name":"Oxford University Press","host_organization_lineage":["https://openalex.org/P4310311648","https://openalex.org/P4310311647"],"host_organization_lineage_names":["Oxford University Press","University of Oxford"],"type":"journal"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Bioinformatics","raw_type":"journal-article"},"type":"article","indexed_in":["crossref","doaj","pubmed"],"open_access":{"is_oa":true,"oa_status":"green","oa_url":"https://www.ncbi.nlm.nih.gov/pmc/articles/2859123","any_repository_has_fulltext":true},"authorships":[{"author_position":"first","author":{"id":"https://openalex.org/A5007997462","display_name":"Janez Konc","orcid":"https://orcid.org/0000-0003-0160-3375"},"institutions":[{"id":"https://openalex.org/I118905719","display_name":"University of Primorska","ror":"https://ror.org/05xefg082","country_code":"SI","type":"education","lineage":["https://openalex.org/I118905719"]},{"id":"https://openalex.org/I4210152560","display_name":"National Institute of Chemistry","ror":"https://ror.org/050mac570","country_code":"SI","type":"facility","lineage":["https://openalex.org/I4210152560"]}],"countries":["SI"],"is_corresponding":false,"raw_author_name":"Janez Konc","raw_affiliation_strings":["1 National Institute of Chemistry, Hajdrihova 19, 1000 Ljubljana and 2 University of Primorska, Faculty of Mathematics, Natural Sciences and Information Technologies, Glagolja\u0161ka 8, 6000 Koper, Slovenia"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"1 National Institute of Chemistry, Hajdrihova 19, 1000 Ljubljana and 2 University of Primorska, Faculty of Mathematics, Natural Sciences and Information Technologies, Glagolja\u0161ka 8, 6000 Koper, Slovenia","institution_ids":["https://openalex.org/I118905719","https://openalex.org/I4210152560"]}]},{"author_position":"last","author":{"id":"https://openalex.org/A5074495088","display_name":"Du\u0161anka Jane\u017ei\u010d","orcid":"https://orcid.org/0000-0003-4067-0116"},"institutions":[{"id":"https://openalex.org/I118905719","display_name":"University of Primorska","ror":"https://ror.org/05xefg082","country_code":"SI","type":"education","lineage":["https://openalex.org/I118905719"]},{"id":"https://openalex.org/I4210152560","display_name":"National Institute of Chemistry","ror":"https://ror.org/050mac570","country_code":"SI","type":"facility","lineage":["https://openalex.org/I4210152560"]}],"countries":["SI"],"is_corresponding":false,"raw_author_name":"Du\u0161anka Jane\u017ei\u010d","raw_affiliation_strings":["1 National Institute of Chemistry, Hajdrihova 19, 1000 Ljubljana and 2 University of Primorska, Faculty of Mathematics, Natural Sciences and Information Technologies, Glagolja\u0161ka 8, 6000 Koper, Slovenia"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"1 National Institute of Chemistry, Hajdrihova 19, 1000 Ljubljana and 2 University of Primorska, Faculty of Mathematics, Natural Sciences and Information Technologies, Glagolja\u0161ka 8, 6000 Koper, Slovenia","institution_ids":["https://openalex.org/I118905719","https://openalex.org/I4210152560"]}]}],"institutions":[],"countries_distinct_count":1,"institutions_distinct_count":2,"corresponding_author_ids":[],"corresponding_institution_ids":[],"apc_list":{"value":3618,"currency":"USD","value_usd":3618},"apc_paid":null,"fwci":8.9723,"has_fulltext":false,"cited_by_count":280,"citation_normalized_percentile":{"value":0.98698896,"is_in_top_1_percent":false,"is_in_top_10_percent":true},"cited_by_percentile_year":{"min":99,"max":100},"biblio":{"volume":"26","issue":"9","first_page":"1160","last_page":"1168"},"is_retracted":false,"is_paratext":false,"is_xpac":false,"primary_topic":{"id":"https://openalex.org/T10044","display_name":"Protein Structure and Dynamics","score":0.8245000243186951,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},"topics":[{"id":"https://openalex.org/T10044","display_name":"Protein Structure and Dynamics","score":0.8245000243186951,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},{"id":"https://openalex.org/T11162","display_name":"Enzyme Structure and Function","score":0.025200000032782555,"subfield":{"id":"https://openalex.org/subfields/2505","display_name":"Materials Chemistry"},"field":{"id":"https://openalex.org/fields/25","display_name":"Materials Science"},"domain":{"id":"https://openalex.org/domains/3","display_name":"Physical Sciences"}},{"id":"https://openalex.org/T13937","display_name":"Genetics, Bioinformatics, and Biomedical Research","score":0.014800000004470348,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}}],"keywords":[{"id":"https://openalex.org/keywords/computer-science","display_name":"Computer science","score":0.5964604616165161},{"id":"https://openalex.org/keywords/protein-structure","display_name":"Protein structure","score":0.5285685658454895},{"id":"https://openalex.org/keywords/structural-alignment","display_name":"Structural alignment","score":0.4714934229850769},{"id":"https://openalex.org/keywords/protein-data-bank","display_name":"Protein Data Bank","score":0.4650731086730957},{"id":"https://openalex.org/keywords/software","display_name":"Software","score":0.4387041926383972},{"id":"https://openalex.org/keywords/data-mining","display_name":"Data mining","score":0.4383388161659241},{"id":"https://openalex.org/keywords/algorithm","display_name":"Algorithm","score":0.4249131977558136},{"id":"https://openalex.org/keywords/protein-structure-database","display_name":"Protein structure database","score":0.41836851835250854},{"id":"https://openalex.org/keywords/computational-biology","display_name":"Computational biology","score":0.3712628483772278},{"id":"https://openalex.org/keywords/sequence-alignment","display_name":"Sequence alignment","score":0.3487599492073059},{"id":"https://openalex.org/keywords/database","display_name":"Database","score":0.3363730311393738},{"id":"https://openalex.org/keywords/chemistry","display_name":"Chemistry","score":0.2534867525100708},{"id":"https://openalex.org/keywords/biology","display_name":"Biology","score":0.2437681257724762},{"id":"https://openalex.org/keywords/sequence-database","display_name":"Sequence database","score":0.2119288146495819},{"id":"https://openalex.org/keywords/peptide-sequence","display_name":"Peptide sequence","score":0.20912706851959229},{"id":"https://openalex.org/keywords/gene","display_name":"Gene","score":0.19756191968917847},{"id":"https://openalex.org/keywords/genetics","display_name":"Genetics","score":0.14999878406524658},{"id":"https://openalex.org/keywords/biochemistry","display_name":"Biochemistry","score":0.11969715356826782}],"concepts":[{"id":"https://openalex.org/C41008148","wikidata":"https://www.wikidata.org/wiki/Q21198","display_name":"Computer science","level":0,"score":0.5964604616165161},{"id":"https://openalex.org/C47701112","wikidata":"https://www.wikidata.org/wiki/Q735188","display_name":"Protein structure","level":2,"score":0.5285685658454895},{"id":"https://openalex.org/C4668613","wikidata":"https://www.wikidata.org/wiki/Q4116110","display_name":"Structural alignment","level":5,"score":0.4714934229850769},{"id":"https://openalex.org/C119145174","wikidata":"https://www.wikidata.org/wiki/Q7251429","display_name":"Protein Data Bank","level":3,"score":0.4650731086730957},{"id":"https://openalex.org/C2777904410","wikidata":"https://www.wikidata.org/wiki/Q7397","display_name":"Software","level":2,"score":0.4387041926383972},{"id":"https://openalex.org/C124101348","wikidata":"https://www.wikidata.org/wiki/Q172491","display_name":"Data mining","level":1,"score":0.4383388161659241},{"id":"https://openalex.org/C11413529","wikidata":"https://www.wikidata.org/wiki/Q8366","display_name":"Algorithm","level":1,"score":0.4249131977558136},{"id":"https://openalex.org/C136475424","wikidata":"https://www.wikidata.org/wiki/Q7251500","display_name":"Protein structure database","level":4,"score":0.41836851835250854},{"id":"https://openalex.org/C70721500","wikidata":"https://www.wikidata.org/wiki/Q177005","display_name":"Computational biology","level":1,"score":0.3712628483772278},{"id":"https://openalex.org/C45484198","wikidata":"https://www.wikidata.org/wiki/Q827246","display_name":"Sequence alignment","level":4,"score":0.3487599492073059},{"id":"https://openalex.org/C77088390","wikidata":"https://www.wikidata.org/wiki/Q8513","display_name":"Database","level":1,"score":0.3363730311393738},{"id":"https://openalex.org/C185592680","wikidata":"https://www.wikidata.org/wiki/Q2329","display_name":"Chemistry","level":0,"score":0.2534867525100708},{"id":"https://openalex.org/C86803240","wikidata":"https://www.wikidata.org/wiki/Q420","display_name":"Biology","level":0,"score":0.2437681257724762},{"id":"https://openalex.org/C41584329","wikidata":"https://www.wikidata.org/wiki/Q175902","display_name":"Sequence database","level":3,"score":0.2119288146495819},{"id":"https://openalex.org/C167625842","wikidata":"https://www.wikidata.org/wiki/Q899763","display_name":"Peptide sequence","level":3,"score":0.20912706851959229},{"id":"https://openalex.org/C104317684","wikidata":"https://www.wikidata.org/wiki/Q7187","display_name":"Gene","level":2,"score":0.19756191968917847},{"id":"https://openalex.org/C54355233","wikidata":"https://www.wikidata.org/wiki/Q7162","display_name":"Genetics","level":1,"score":0.14999878406524658},{"id":"https://openalex.org/C55493867","wikidata":"https://www.wikidata.org/wiki/Q7094","display_name":"Biochemistry","level":1,"score":0.11969715356826782},{"id":"https://openalex.org/C199360897","wikidata":"https://www.wikidata.org/wiki/Q9143","display_name":"Programming language","level":1,"score":0.0}],"mesh":[{"descriptor_ui":"D000465","descriptor_name":"Algorithms","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D000465","descriptor_name":"Algorithms","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D000465","descriptor_name":"Algorithms","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D001665","descriptor_name":"Binding Sites","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D001665","descriptor_name":"Binding Sites","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D001665","descriptor_name":"Binding Sites","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D004247","descriptor_name":"DNA","qualifier_ui":"Q000737","qualifier_name":"chemistry","is_major_topic":false},{"descriptor_ui":"D004247","descriptor_name":"DNA","qualifier_ui":"Q000737","qualifier_name":"chemistry","is_major_topic":false},{"descriptor_ui":"D004247","descriptor_name":"DNA","qualifier_ui":"Q000737","qualifier_name":"chemistry","is_major_topic":false},{"descriptor_ui":"D008024","descriptor_name":"Ligands","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D008024","descriptor_name":"Ligands","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D008024","descriptor_name":"Ligands","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D011487","descriptor_name":"Protein Conformation","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D011487","descriptor_name":"Protein Conformation","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D011487","descriptor_name":"Protein Conformation","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D011506","descriptor_name":"Proteins","qualifier_ui":"Q000737","qualifier_name":"chemistry","is_major_topic":false},{"descriptor_ui":"D011506","descriptor_name":"Proteins","qualifier_ui":"Q000737","qualifier_name":"chemistry","is_major_topic":false},{"descriptor_ui":"D011506","descriptor_name":"Proteins","qualifier_ui":"Q000737","qualifier_name":"chemistry","is_major_topic":false},{"descriptor_ui":"D013499","descriptor_name":"Surface Properties","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D013499","descriptor_name":"Surface Properties","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D013499","descriptor_name":"Surface Properties","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D016415","descriptor_name":"Sequence Alignment","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D016415","descriptor_name":"Sequence Alignment","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D016415","descriptor_name":"Sequence Alignment","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D018360","descriptor_name":"Crystallography, X-Ray","qualifier_ui":"Q000379","qualifier_name":"methods","is_major_topic":false},{"descriptor_ui":"D018360","descriptor_name":"Crystallography, X-Ray","qualifier_ui":"Q000379","qualifier_name":"methods","is_major_topic":false},{"descriptor_ui":"D018360","descriptor_name":"Crystallography, X-Ray","qualifier_ui":"Q000379","qualifier_name":"methods","is_major_topic":false},{"descriptor_ui":"D019295","descriptor_name":"Computational Biology","qualifier_ui":"Q000379","qualifier_name":"methods","is_major_topic":false},{"descriptor_ui":"D019295","descriptor_name":"Computational Biology","qualifier_ui":"Q000379","qualifier_name":"methods","is_major_topic":false},{"descriptor_ui":"D019295","descriptor_name":"Computational Biology","qualifier_ui":"Q000379","qualifier_name":"methods","is_major_topic":false},{"descriptor_ui":"D025941","descriptor_name":"Protein Interaction Mapping","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D025941","descriptor_name":"Protein Interaction Mapping","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D025941","descriptor_name":"Protein Interaction Mapping","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D030562","descriptor_name":"Databases, Protein","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D030562","descriptor_name":"Databases, Protein","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D030562","descriptor_name":"Databases, Protein","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D040681","descriptor_name":"Structural Homology, Protein","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D040681","descriptor_name":"Structural Homology, Protein","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D040681","descriptor_name":"Structural Homology, Protein","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false}],"locations_count":3,"locations":[{"id":"doi:10.1093/bioinformatics/btq100","is_oa":false,"landing_page_url":"https://doi.org/10.1093/bioinformatics/btq100","pdf_url":null,"source":{"id":"https://openalex.org/S52395412","display_name":"Bioinformatics","issn_l":"1367-4803","issn":["1367-4803","1367-4811"],"is_oa":false,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310311648","host_organization_name":"Oxford University Press","host_organization_lineage":["https://openalex.org/P4310311648","https://openalex.org/P4310311647"],"host_organization_lineage_names":["Oxford University Press","University of Oxford"],"type":"journal"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Bioinformatics","raw_type":"journal-article"},{"id":"pmid:20305268","is_oa":false,"landing_page_url":"https://pubmed.ncbi.nlm.nih.gov/20305268","pdf_url":null,"source":{"id":"https://openalex.org/S4306525036","display_name":"PubMed","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I1299303238","host_organization_name":"National Institutes of Health","host_organization_lineage":["https://openalex.org/I1299303238"],"host_organization_lineage_names":[],"type":"repository"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Bioinformatics (Oxford, England)","raw_type":null},{"id":"pmh:oai:pubmedcentral.nih.gov:2859123","is_oa":true,"landing_page_url":"https://www.ncbi.nlm.nih.gov/pmc/articles/2859123","pdf_url":null,"source":{"id":"https://openalex.org/S2764455111","display_name":"PubMed Central","issn_l":null,"issn":null,"is_oa":true,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I1299303238","host_organization_name":"National Institutes of Health","host_organization_lineage":["https://openalex.org/I1299303238"],"host_organization_lineage_names":[],"type":"repository"},"license":null,"license_id":null,"version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":"Bioinformatics","raw_type":"Text"}],"best_oa_location":{"id":"pmh:oai:pubmedcentral.nih.gov:2859123","is_oa":true,"landing_page_url":"https://www.ncbi.nlm.nih.gov/pmc/articles/2859123","pdf_url":null,"source":{"id":"https://openalex.org/S2764455111","display_name":"PubMed Central","issn_l":null,"issn":null,"is_oa":true,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I1299303238","host_organization_name":"National Institutes of Health","host_organization_lineage":["https://openalex.org/I1299303238"],"host_organization_lineage_names":[],"type":"repository"},"license":null,"license_id":null,"version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":"Bioinformatics","raw_type":"Text"},"sustainable_development_goals":[{"display_name":"Life in Land","score":0.6800000071525574,"id":"https://metadata.un.org/sdg/15"}],"awards":[{"id":"https://openalex.org/G6070106675","display_name":"Multiscale modeling and simulation of soft and biological matter in and out of equilibrium","funder_award_id":"P1-0002","funder_id":"https://openalex.org/F4320322554","funder_display_name":"Javna Agencija za Raziskovalno Dejavnost RS"}],"funders":[{"id":"https://openalex.org/F4320322554","display_name":"Javna Agencija za Raziskovalno Dejavnost RS","ror":"https://ror.org/059bp8k51"},{"id":"https://openalex.org/F4320327264","display_name":"Ministrstvo za visoko \u0161olstvo, znanost in tehnologijo","ror":"https://ror.org/0452h9305"}],"has_content":{"pdf":false,"grobid_xml":false},"content_urls":null,"referenced_works_count":35,"referenced_works":["https://openalex.org/W21816278","https://openalex.org/W1659313070","https://openalex.org/W1964640688","https://openalex.org/W1967408543","https://openalex.org/W1986046522","https://openalex.org/W1999758645","https://openalex.org/W2026188828","https://openalex.org/W2044128233","https://openalex.org/W2044284701","https://openalex.org/W2044359120","https://openalex.org/W2046407284","https://openalex.org/W2047544230","https://openalex.org/W2051895548","https://openalex.org/W2056951033","https://openalex.org/W2091861424","https://openalex.org/W2093689899","https://openalex.org/W2094519647","https://openalex.org/W2106449850","https://openalex.org/W2115156437","https://openalex.org/W2123375001","https://openalex.org/W2127597332","https://openalex.org/W2128402268","https://openalex.org/W2136224545","https://openalex.org/W2137955461","https://openalex.org/W2139448426","https://openalex.org/W2143210482","https://openalex.org/W2146940292","https://openalex.org/W2150444353","https://openalex.org/W2152521138","https://openalex.org/W2157892451","https://openalex.org/W2158714788","https://openalex.org/W2183091601","https://openalex.org/W2195959843","https://openalex.org/W6685863130","https://openalex.org/W6687320464"],"related_works":["https://openalex.org/W1495233806","https://openalex.org/W1997379747","https://openalex.org/W2015399150","https://openalex.org/W2181530468","https://openalex.org/W2121688928","https://openalex.org/W2106883599","https://openalex.org/W4232453105","https://openalex.org/W2084743099","https://openalex.org/W2131204071","https://openalex.org/W1988384104"],"abstract_inverted_index":{"MOTIVATION:":[0],"Exploitation":[1],"of":[2,7,13,18,55,58,72,102,139,157],"locally":[3],"similar":[4,38,68],"3D":[5,60],"patterns":[6,71],"physicochemical":[8,73],"properties":[9,74],"on":[10,40,75,125],"the":[11,50,76,85,95,106,114,126,137],"surface":[12,45,117],"a":[14,56,153],"protein":[15,41,52,59,77,97,128],"for":[16,113,136,159],"detection":[17,138],"binding":[19,145],"sites":[20,39,69],"that":[21,35,89],"may":[22],"lack":[23],"sequence":[24],"and":[25,62,98,119,143],"global":[26],"structural":[27,92],"conservation.":[28],"RESULTS:":[29],"An":[30],"algorithm,":[31,84],"ProBiS":[32],"is":[33,150],"described":[34],"detects":[36,63],"structurally":[37,67],"surfaces":[42],"by":[43],"local":[44,91],"structure":[46],"alignment.":[47],"It":[48],"compares":[49],"query":[51,96,115,127],"to":[53],"members":[54],"database":[57],"structures":[61],"with":[64,94,105],"sub-residue":[65],"precision,":[66],"as":[70,122,152],"surface.":[78,129],"Using":[79],"an":[80],"efficient":[81],"maximum":[82],"clique":[83],"program":[86],"identifies":[87],"proteins":[88,104],"share":[90],"similarities":[93],"generates":[99],"structure-based":[100],"alignments":[101],"these":[103],"query.":[107],"Structural":[108],"similarity":[109],"scores":[110],"are":[111,120],"calculated":[112],"protein's":[116],"residues,":[118],"expressed":[121],"different":[123],"colors":[124],"The":[130,148],"algorithm":[131],"has":[132],"been":[133],"used":[134],"successfully":[135],"protein-protein,":[140],"protein-small":[141],"ligand":[142],"protein-DNA":[144],"sites.":[146],"AVAILABILITY:":[147],"software":[149],"available,":[151],"web":[154],"tool,":[155],"free":[156],"charge":[158],"academic":[160],"users":[161],"at":[162],"http://probis.cmm.ki.si.":[163]},"counts_by_year":[{"year":2026,"cited_by_count":13},{"year":2025,"cited_by_count":15},{"year":2024,"cited_by_count":9},{"year":2023,"cited_by_count":13},{"year":2022,"cited_by_count":19},{"year":2021,"cited_by_count":15},{"year":2020,"cited_by_count":21},{"year":2019,"cited_by_count":16},{"year":2018,"cited_by_count":16},{"year":2017,"cited_by_count":16},{"year":2016,"cited_by_count":19},{"year":2015,"cited_by_count":19},{"year":2014,"cited_by_count":17},{"year":2013,"cited_by_count":24},{"year":2012,"cited_by_count":25}],"updated_date":"2026-08-08T01:25:22.217667","created_date":"2025-10-10T00:00:00"}