{"id":"https://openalex.org/W2122959020","doi":"https://doi.org/10.1093/bioinformatics/btq083","title":"ESBTL: efficient PDB parser and data structure for the structural and geometric analysis of biological macromolecules","display_name":"ESBTL: efficient PDB parser and data structure for the structural and geometric analysis of biological macromolecules","publication_year":2010,"publication_date":"2010-02-24","ids":{"openalex":"https://openalex.org/W2122959020","doi":"https://doi.org/10.1093/bioinformatics/btq083","mag":"2122959020","pmid":"https://pubmed.ncbi.nlm.nih.gov/20185407"},"language":"en","primary_location":{"id":"doi:10.1093/bioinformatics/btq083","is_oa":true,"landing_page_url":"https://doi.org/10.1093/bioinformatics/btq083","pdf_url":"https://academic.oup.com/bioinformatics/article-pdf/26/8/1127/540577/btq083.pdf","source":{"id":"https://openalex.org/S52395412","display_name":"Bioinformatics","issn_l":"1367-4803","issn":["1367-4803","1367-4811"],"is_oa":false,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310311648","host_organization_name":"Oxford University Press","host_organization_lineage":["https://openalex.org/P4310311648","https://openalex.org/P4310311647"],"host_organization_lineage_names":["Oxford University Press","University of Oxford"],"type":"journal"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Bioinformatics","raw_type":"journal-article"},"type":"article","indexed_in":["crossref","doaj","pubmed"],"open_access":{"is_oa":true,"oa_status":"bronze","oa_url":"https://academic.oup.com/bioinformatics/article-pdf/26/8/1127/540577/btq083.pdf","any_repository_has_fulltext":false},"authorships":[{"author_position":"first","author":{"id":"https://openalex.org/A5077337377","display_name":"S\u00e9bastien Loriot","orcid":null},"institutions":[{"id":"https://openalex.org/I1326498283","display_name":"Institut national de recherche en informatique et en automatique","ror":"https://ror.org/02kvxyf05","country_code":"FR","type":"funder","lineage":["https://openalex.org/I1326498283"]},{"id":"https://openalex.org/I142476485","display_name":"\u00c9cole Polytechnique","ror":"https://ror.org/05hy3tk52","country_code":"FR","type":"education","lineage":["https://openalex.org/I142476485","https://openalex.org/I4210145102"]}],"countries":["FR"],"is_corresponding":true,"raw_author_name":"S\u00e9bastien Loriot","raw_affiliation_strings":["1 ABS, INRIA Sophia Antipolis, 2004 route des Lucioles, 06902 Sophia-Antipolis and 2 AMIB INRIA - Bioinformatics group, LIX, \u00c9cole Polytechnique, 91128 Palaiseau, France"],"affiliations":[{"raw_affiliation_string":"1 ABS, INRIA Sophia Antipolis, 2004 route des Lucioles, 06902 Sophia-Antipolis and 2 AMIB INRIA - Bioinformatics group, LIX, \u00c9cole Polytechnique, 91128 Palaiseau, France","institution_ids":["https://openalex.org/I1326498283","https://openalex.org/I142476485"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5029454516","display_name":"Fr\u00e9d\u00e9ric Cazals","orcid":"https://orcid.org/0000-0003-2735-6755"},"institutions":[{"id":"https://openalex.org/I142476485","display_name":"\u00c9cole Polytechnique","ror":"https://ror.org/05hy3tk52","country_code":"FR","type":"education","lineage":["https://openalex.org/I142476485","https://openalex.org/I4210145102"]},{"id":"https://openalex.org/I1326498283","display_name":"Institut national de recherche en informatique et en automatique","ror":"https://ror.org/02kvxyf05","country_code":"FR","type":"funder","lineage":["https://openalex.org/I1326498283"]}],"countries":["FR"],"is_corresponding":false,"raw_author_name":"Fr\u00e9d\u00e9ric Cazals","raw_affiliation_strings":["1 ABS, INRIA Sophia Antipolis, 2004 route des Lucioles, 06902 Sophia-Antipolis and 2 AMIB INRIA - Bioinformatics group, LIX, \u00c9cole Polytechnique, 91128 Palaiseau, France"],"affiliations":[{"raw_affiliation_string":"1 ABS, INRIA Sophia Antipolis, 2004 route des Lucioles, 06902 Sophia-Antipolis and 2 AMIB INRIA - Bioinformatics group, LIX, \u00c9cole Polytechnique, 91128 Palaiseau, France","institution_ids":["https://openalex.org/I1326498283","https://openalex.org/I142476485"]}]},{"author_position":"last","author":{"id":"https://openalex.org/A5078833726","display_name":"Julie Bernauer","orcid":"https://orcid.org/0000-0003-2345-995X"},"institutions":[{"id":"https://openalex.org/I142476485","display_name":"\u00c9cole Polytechnique","ror":"https://ror.org/05hy3tk52","country_code":"FR","type":"education","lineage":["https://openalex.org/I142476485","https://openalex.org/I4210145102"]},{"id":"https://openalex.org/I1326498283","display_name":"Institut national de recherche en informatique et en automatique","ror":"https://ror.org/02kvxyf05","country_code":"FR","type":"funder","lineage":["https://openalex.org/I1326498283"]}],"countries":["FR"],"is_corresponding":false,"raw_author_name":"Julie Bernauer","raw_affiliation_strings":["1 ABS, INRIA Sophia Antipolis, 2004 route des Lucioles, 06902 Sophia-Antipolis and 2 AMIB INRIA - Bioinformatics group, LIX, \u00c9cole Polytechnique, 91128 Palaiseau, France"],"affiliations":[{"raw_affiliation_string":"1 ABS, INRIA Sophia Antipolis, 2004 route des Lucioles, 06902 Sophia-Antipolis and 2 AMIB INRIA - Bioinformatics group, LIX, \u00c9cole Polytechnique, 91128 Palaiseau, France","institution_ids":["https://openalex.org/I1326498283","https://openalex.org/I142476485"]}]}],"institutions":[],"countries_distinct_count":1,"institutions_distinct_count":3,"corresponding_author_ids":["https://openalex.org/A5077337377"],"corresponding_institution_ids":["https://openalex.org/I1326498283","https://openalex.org/I142476485"],"apc_list":{"value":3618,"currency":"USD","value_usd":3618},"apc_paid":null,"fwci":0.3073,"has_fulltext":false,"cited_by_count":9,"citation_normalized_percentile":{"value":0.58732757,"is_in_top_1_percent":false,"is_in_top_10_percent":false},"cited_by_percentile_year":{"min":89,"max":96},"biblio":{"volume":"26","issue":"8","first_page":"1127","last_page":"1128"},"is_retracted":false,"is_paratext":false,"is_xpac":false,"primary_topic":{"id":"https://openalex.org/T11162","display_name":"Enzyme Structure and Function","score":0.9998000264167786,"subfield":{"id":"https://openalex.org/subfields/2505","display_name":"Materials Chemistry"},"field":{"id":"https://openalex.org/fields/25","display_name":"Materials Science"},"domain":{"id":"https://openalex.org/domains/3","display_name":"Physical Sciences"}},"topics":[{"id":"https://openalex.org/T11162","display_name":"Enzyme Structure and Function","score":0.9998000264167786,"subfield":{"id":"https://openalex.org/subfields/2505","display_name":"Materials Chemistry"},"field":{"id":"https://openalex.org/fields/25","display_name":"Materials Science"},"domain":{"id":"https://openalex.org/domains/3","display_name":"Physical Sciences"}},{"id":"https://openalex.org/T10044","display_name":"Protein Structure and Dynamics","score":0.9994000196456909,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},{"id":"https://openalex.org/T10932","display_name":"Microbial Metabolic Engineering and Bioproduction","score":0.9961000084877014,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}}],"keywords":[{"id":"https://openalex.org/keywords/parsing","display_name":"Parsing","score":0.8105571269989014},{"id":"https://openalex.org/keywords/computer-science","display_name":"Computer science","score":0.7873152494430542},{"id":"https://openalex.org/keywords/protein-data-bank","display_name":"Protein Data Bank (RCSB PDB)","score":0.7630426287651062},{"id":"https://openalex.org/keywords/mit-license","display_name":"MIT License","score":0.761360764503479},{"id":"https://openalex.org/keywords/code","display_name":"Code (set theory)","score":0.6085513234138489},{"id":"https://openalex.org/keywords/software","display_name":"Software","score":0.5806973576545715},{"id":"https://openalex.org/keywords/documentation","display_name":"Documentation","score":0.5773892402648926},{"id":"https://openalex.org/keywords/source-code","display_name":"Source code","score":0.5754568576812744},{"id":"https://openalex.org/keywords/programming-language","display_name":"Programming language","score":0.5403788685798645},{"id":"https://openalex.org/keywords/data-structure","display_name":"Data structure","score":0.5276264548301697},{"id":"https://openalex.org/keywords/license","display_name":"License","score":0.4237293004989624},{"id":"https://openalex.org/keywords/information-retrieval","display_name":"Information retrieval","score":0.38997435569763184},{"id":"https://openalex.org/keywords/data-mining","display_name":"Data mining","score":0.3370784521102905},{"id":"https://openalex.org/keywords/operating-system","display_name":"Operating system","score":0.1206386387348175}],"concepts":[{"id":"https://openalex.org/C186644900","wikidata":"https://www.wikidata.org/wiki/Q194152","display_name":"Parsing","level":2,"score":0.8105571269989014},{"id":"https://openalex.org/C41008148","wikidata":"https://www.wikidata.org/wiki/Q21198","display_name":"Computer science","level":0,"score":0.7873152494430542},{"id":"https://openalex.org/C65556437","wikidata":"https://www.wikidata.org/wiki/Q766195","display_name":"Protein Data Bank (RCSB PDB)","level":2,"score":0.7630426287651062},{"id":"https://openalex.org/C174183944","wikidata":"https://www.wikidata.org/wiki/Q334661","display_name":"MIT License","level":3,"score":0.761360764503479},{"id":"https://openalex.org/C2776760102","wikidata":"https://www.wikidata.org/wiki/Q5139990","display_name":"Code (set theory)","level":3,"score":0.6085513234138489},{"id":"https://openalex.org/C2777904410","wikidata":"https://www.wikidata.org/wiki/Q7397","display_name":"Software","level":2,"score":0.5806973576545715},{"id":"https://openalex.org/C56666940","wikidata":"https://www.wikidata.org/wiki/Q788790","display_name":"Documentation","level":2,"score":0.5773892402648926},{"id":"https://openalex.org/C43126263","wikidata":"https://www.wikidata.org/wiki/Q128751","display_name":"Source code","level":2,"score":0.5754568576812744},{"id":"https://openalex.org/C199360897","wikidata":"https://www.wikidata.org/wiki/Q9143","display_name":"Programming language","level":1,"score":0.5403788685798645},{"id":"https://openalex.org/C162319229","wikidata":"https://www.wikidata.org/wiki/Q175263","display_name":"Data structure","level":2,"score":0.5276264548301697},{"id":"https://openalex.org/C2780560020","wikidata":"https://www.wikidata.org/wiki/Q79719","display_name":"License","level":2,"score":0.4237293004989624},{"id":"https://openalex.org/C23123220","wikidata":"https://www.wikidata.org/wiki/Q816826","display_name":"Information retrieval","level":1,"score":0.38997435569763184},{"id":"https://openalex.org/C124101348","wikidata":"https://www.wikidata.org/wiki/Q172491","display_name":"Data mining","level":1,"score":0.3370784521102905},{"id":"https://openalex.org/C111919701","wikidata":"https://www.wikidata.org/wiki/Q9135","display_name":"Operating system","level":1,"score":0.1206386387348175},{"id":"https://openalex.org/C46141821","wikidata":"https://www.wikidata.org/wiki/Q209402","display_name":"Nuclear magnetic resonance","level":1,"score":0.0},{"id":"https://openalex.org/C121332964","wikidata":"https://www.wikidata.org/wiki/Q413","display_name":"Physics","level":0,"score":0.0},{"id":"https://openalex.org/C177264268","wikidata":"https://www.wikidata.org/wiki/Q1514741","display_name":"Set (abstract data type)","level":2,"score":0.0}],"mesh":[{"descriptor_ui":"D011506","descriptor_name":"Proteins","qualifier_ui":"Q000737","qualifier_name":"chemistry","is_major_topic":false},{"descriptor_ui":"D011506","descriptor_name":"Proteins","qualifier_ui":"Q000737","qualifier_name":"chemistry","is_major_topic":false},{"descriptor_ui":"D011506","descriptor_name":"Proteins","qualifier_ui":"Q000737","qualifier_name":"chemistry","is_major_topic":false},{"descriptor_ui":"D012984","descriptor_name":"Software","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D012984","descriptor_name":"Software","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D012984","descriptor_name":"Software","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D019295","descriptor_name":"Computational Biology","qualifier_ui":"Q000379","qualifier_name":"methods","is_major_topic":false},{"descriptor_ui":"D019295","descriptor_name":"Computational Biology","qualifier_ui":"Q000379","qualifier_name":"methods","is_major_topic":false},{"descriptor_ui":"D019295","descriptor_name":"Computational Biology","qualifier_ui":"Q000379","qualifier_name":"methods","is_major_topic":false},{"descriptor_ui":"D030562","descriptor_name":"Databases, Protein","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D030562","descriptor_name":"Databases, Protein","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D030562","descriptor_name":"Databases, Protein","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true}],"locations_count":3,"locations":[{"id":"doi:10.1093/bioinformatics/btq083","is_oa":true,"landing_page_url":"https://doi.org/10.1093/bioinformatics/btq083","pdf_url":"https://academic.oup.com/bioinformatics/article-pdf/26/8/1127/540577/btq083.pdf","source":{"id":"https://openalex.org/S52395412","display_name":"Bioinformatics","issn_l":"1367-4803","issn":["1367-4803","1367-4811"],"is_oa":false,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310311648","host_organization_name":"Oxford University Press","host_organization_lineage":["https://openalex.org/P4310311648","https://openalex.org/P4310311647"],"host_organization_lineage_names":["Oxford University Press","University of Oxford"],"type":"journal"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Bioinformatics","raw_type":"journal-article"},{"id":"pmid:20185407","is_oa":false,"landing_page_url":"https://pubmed.ncbi.nlm.nih.gov/20185407","pdf_url":null,"source":{"id":"https://openalex.org/S4306525036","display_name":"PubMed","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I1299303238","host_organization_name":"National Institutes of Health","host_organization_lineage":["https://openalex.org/I1299303238"],"host_organization_lineage_names":[],"type":"repository"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Bioinformatics (Oxford, England)","raw_type":null},{"id":"pmh:oai:HAL:inria-00536404v1","is_oa":false,"landing_page_url":"https://inria.hal.science/inria-00536404","pdf_url":null,"source":{"id":"https://openalex.org/S4306402512","display_name":"HAL (Le Centre pour la Communication Scientifique Directe)","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I1294671590","host_organization_name":"Centre National de la Recherche Scientifique","host_organization_lineage":["https://openalex.org/I1294671590"],"host_organization_lineage_names":[],"type":"repository"},"license":null,"license_id":null,"version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":"http://bioinformatics.oxfordjournals.org/cgi/reprint/26/8/1127.pdf","raw_type":"Journal articles"}],"best_oa_location":{"id":"doi:10.1093/bioinformatics/btq083","is_oa":true,"landing_page_url":"https://doi.org/10.1093/bioinformatics/btq083","pdf_url":"https://academic.oup.com/bioinformatics/article-pdf/26/8/1127/540577/btq083.pdf","source":{"id":"https://openalex.org/S52395412","display_name":"Bioinformatics","issn_l":"1367-4803","issn":["1367-4803","1367-4811"],"is_oa":false,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310311648","host_organization_name":"Oxford University Press","host_organization_lineage":["https://openalex.org/P4310311648","https://openalex.org/P4310311647"],"host_organization_lineage_names":["Oxford University Press","University of Oxford"],"type":"journal"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Bioinformatics","raw_type":"journal-article"},"sustainable_development_goals":[],"awards":[],"funders":[],"has_content":{"grobid_xml":true,"pdf":true},"content_urls":{"pdf":"https://content.openalex.org/works/W2122959020.pdf","grobid_xml":"https://content.openalex.org/works/W2122959020.grobid-xml"},"referenced_works_count":12,"referenced_works":["https://openalex.org/W1562656218","https://openalex.org/W2061742318","https://openalex.org/W2081897966","https://openalex.org/W2094935440","https://openalex.org/W2119894792","https://openalex.org/W2142694980","https://openalex.org/W2152877209","https://openalex.org/W2153657280","https://openalex.org/W2158528359","https://openalex.org/W2168172687","https://openalex.org/W2168211076","https://openalex.org/W6633824467"],"related_works":["https://openalex.org/W2952811294","https://openalex.org/W2589205199","https://openalex.org/W2902060081","https://openalex.org/W4309247532","https://openalex.org/W3026082741","https://openalex.org/W3096946169","https://openalex.org/W2113128227","https://openalex.org/W2144610372","https://openalex.org/W4312114021","https://openalex.org/W4311938462"],"abstract_inverted_index":{"ESBTL":[0],"is":[1],"freely":[2],"available":[3],"under":[4],"the":[5,16],"GNU":[6],"General":[7],"Public":[8],"License":[9],"from":[10],"http://esbtl.sf.net.":[11],"The":[12],"web":[13],"site":[14],"provides":[15],"source":[17],"code,":[18],"examples,":[19],"code":[20],"snippets":[21],"and":[22],"documentation.":[23]},"counts_by_year":[{"year":2020,"cited_by_count":2},{"year":2019,"cited_by_count":2},{"year":2015,"cited_by_count":1},{"year":2014,"cited_by_count":2},{"year":2013,"cited_by_count":1},{"year":2012,"cited_by_count":1}],"updated_date":"2025-11-06T03:46:38.306776","created_date":"2025-10-10T00:00:00"}
