{"id":"https://openalex.org/W2165944862","doi":"https://doi.org/10.1093/bioinformatics/btq048","title":"Metscape: a Cytoscape plug-in for visualizing and interpreting metabolomic data in the context of human metabolic networks","display_name":"Metscape: a Cytoscape plug-in for visualizing and interpreting metabolomic data in the context of human metabolic networks","publication_year":2010,"publication_date":"2010-02-07","ids":{"openalex":"https://openalex.org/W2165944862","doi":"https://doi.org/10.1093/bioinformatics/btq048","mag":"2165944862","pmid":"https://pubmed.ncbi.nlm.nih.gov/20139469"},"language":"en","primary_location":{"id":"doi:10.1093/bioinformatics/btq048","is_oa":true,"landing_page_url":"https://doi.org/10.1093/bioinformatics/btq048","pdf_url":"https://academic.oup.com/bioinformatics/article-pdf/26/7/971/48856391/bioinformatics_26_7_971.pdf","source":{"id":"https://openalex.org/S52395412","display_name":"Bioinformatics","issn_l":"1367-4803","issn":["1367-4803","1367-4811"],"is_oa":false,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310311648","host_organization_name":"Oxford University Press","host_organization_lineage":["https://openalex.org/P4310311648","https://openalex.org/P4310311647"],"host_organization_lineage_names":["Oxford University Press","University of Oxford"],"type":"journal"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Bioinformatics","raw_type":"journal-article"},"type":"article","indexed_in":["crossref","doaj","pubmed"],"open_access":{"is_oa":true,"oa_status":"bronze","oa_url":"https://academic.oup.com/bioinformatics/article-pdf/26/7/971/48856391/bioinformatics_26_7_971.pdf","any_repository_has_fulltext":false},"authorships":[{"author_position":"first","author":{"id":"https://openalex.org/A5101632785","display_name":"Jing Gao","orcid":"https://orcid.org/0000-0002-4815-4565"},"institutions":[{"id":"https://openalex.org/I27837315","display_name":"University of Michigan","ror":"https://ror.org/00jmfr291","country_code":"US","type":"education","lineage":["https://openalex.org/I27837315"]},{"id":"https://openalex.org/I4210117557","display_name":"Michigan Center for Translational Pathology","ror":"https://ror.org/027t4kk23","country_code":"US","type":"facility","lineage":["https://openalex.org/I4210114445","https://openalex.org/I4210117557"]}],"countries":["US"],"is_corresponding":true,"raw_author_name":"Jing Gao","raw_affiliation_strings":["1 National Center for Integrative Biomedical Informatics, 2 Center for Computational Medicine and Biology, 3 Michigan Center for Translational Pathology, 4 Department of Internal Medicine and 5 College of Engineering, University of Michigan, Ann Arbor, MI 48109, USA"],"affiliations":[{"raw_affiliation_string":"1 National Center for Integrative Biomedical Informatics, 2 Center for Computational Medicine and Biology, 3 Michigan Center for Translational Pathology, 4 Department of Internal Medicine and 5 College of Engineering, University of Michigan, Ann Arbor, MI 48109, USA","institution_ids":["https://openalex.org/I4210117557","https://openalex.org/I27837315"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5045247997","display_name":"V. Glenn Tarcea","orcid":null},"institutions":[{"id":"https://openalex.org/I27837315","display_name":"University of Michigan","ror":"https://ror.org/00jmfr291","country_code":"US","type":"education","lineage":["https://openalex.org/I27837315"]},{"id":"https://openalex.org/I4210117557","display_name":"Michigan Center for Translational Pathology","ror":"https://ror.org/027t4kk23","country_code":"US","type":"facility","lineage":["https://openalex.org/I4210114445","https://openalex.org/I4210117557"]}],"countries":["US"],"is_corresponding":false,"raw_author_name":"V. Glenn Tarcea","raw_affiliation_strings":["1 National Center for Integrative Biomedical Informatics, 2 Center for Computational Medicine and Biology, 3 Michigan Center for Translational Pathology, 4 Department of Internal Medicine and 5 College of Engineering, University of Michigan, Ann Arbor, MI 48109, USA"],"affiliations":[{"raw_affiliation_string":"1 National Center for Integrative Biomedical Informatics, 2 Center for Computational Medicine and Biology, 3 Michigan Center for Translational Pathology, 4 Department of Internal Medicine and 5 College of Engineering, University of Michigan, Ann Arbor, MI 48109, USA","institution_ids":["https://openalex.org/I4210117557","https://openalex.org/I27837315"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5007233450","display_name":"Alla Karnovsky","orcid":"https://orcid.org/0000-0001-7388-8520"},"institutions":[{"id":"https://openalex.org/I27837315","display_name":"University of Michigan","ror":"https://ror.org/00jmfr291","country_code":"US","type":"education","lineage":["https://openalex.org/I27837315"]},{"id":"https://openalex.org/I4210117557","display_name":"Michigan Center for Translational Pathology","ror":"https://ror.org/027t4kk23","country_code":"US","type":"facility","lineage":["https://openalex.org/I4210114445","https://openalex.org/I4210117557"]}],"countries":["US"],"is_corresponding":false,"raw_author_name":"Alla Karnovsky","raw_affiliation_strings":["1 National Center for Integrative Biomedical Informatics, 2 Center for Computational Medicine and Biology, 3 Michigan Center for Translational Pathology, 4 Department of Internal Medicine and 5 College of Engineering, University of Michigan, Ann Arbor, MI 48109, USA"],"affiliations":[{"raw_affiliation_string":"1 National Center for Integrative Biomedical Informatics, 2 Center for Computational Medicine and Biology, 3 Michigan Center for Translational Pathology, 4 Department of Internal Medicine and 5 College of Engineering, University of Michigan, Ann Arbor, MI 48109, USA","institution_ids":["https://openalex.org/I4210117557","https://openalex.org/I27837315"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5110271143","display_name":"Barbara R. Mirel","orcid":null},"institutions":[{"id":"https://openalex.org/I27837315","display_name":"University of Michigan","ror":"https://ror.org/00jmfr291","country_code":"US","type":"education","lineage":["https://openalex.org/I27837315"]},{"id":"https://openalex.org/I4210117557","display_name":"Michigan Center for Translational Pathology","ror":"https://ror.org/027t4kk23","country_code":"US","type":"facility","lineage":["https://openalex.org/I4210114445","https://openalex.org/I4210117557"]}],"countries":["US"],"is_corresponding":false,"raw_author_name":"Barbara R. Mirel","raw_affiliation_strings":["1 National Center for Integrative Biomedical Informatics, 2 Center for Computational Medicine and Biology, 3 Michigan Center for Translational Pathology, 4 Department of Internal Medicine and 5 College of Engineering, University of Michigan, Ann Arbor, MI 48109, USA"],"affiliations":[{"raw_affiliation_string":"1 National Center for Integrative Biomedical Informatics, 2 Center for Computational Medicine and Biology, 3 Michigan Center for Translational Pathology, 4 Department of Internal Medicine and 5 College of Engineering, University of Michigan, Ann Arbor, MI 48109, USA","institution_ids":["https://openalex.org/I4210117557","https://openalex.org/I27837315"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5076809103","display_name":"Terry E. Weymouth","orcid":null},"institutions":[{"id":"https://openalex.org/I27837315","display_name":"University of Michigan","ror":"https://ror.org/00jmfr291","country_code":"US","type":"education","lineage":["https://openalex.org/I27837315"]},{"id":"https://openalex.org/I4210117557","display_name":"Michigan Center for Translational Pathology","ror":"https://ror.org/027t4kk23","country_code":"US","type":"facility","lineage":["https://openalex.org/I4210114445","https://openalex.org/I4210117557"]}],"countries":["US"],"is_corresponding":false,"raw_author_name":"Terry E. Weymouth","raw_affiliation_strings":["1 National Center for Integrative Biomedical Informatics, 2 Center for Computational Medicine and Biology, 3 Michigan Center for Translational Pathology, 4 Department of Internal Medicine and 5 College of Engineering, University of Michigan, Ann Arbor, MI 48109, USA"],"affiliations":[{"raw_affiliation_string":"1 National Center for Integrative Biomedical Informatics, 2 Center for Computational Medicine and Biology, 3 Michigan Center for Translational Pathology, 4 Department of Internal Medicine and 5 College of Engineering, University of Michigan, Ann Arbor, MI 48109, USA","institution_ids":["https://openalex.org/I4210117557","https://openalex.org/I27837315"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5001180013","display_name":"Chris Beecher","orcid":"https://orcid.org/0000-0003-4934-7278"},"institutions":[{"id":"https://openalex.org/I27837315","display_name":"University of Michigan","ror":"https://ror.org/00jmfr291","country_code":"US","type":"education","lineage":["https://openalex.org/I27837315"]},{"id":"https://openalex.org/I4210117557","display_name":"Michigan Center for Translational Pathology","ror":"https://ror.org/027t4kk23","country_code":"US","type":"facility","lineage":["https://openalex.org/I4210114445","https://openalex.org/I4210117557"]}],"countries":["US"],"is_corresponding":false,"raw_author_name":"Christopher W. Beecher","raw_affiliation_strings":["1 National Center for Integrative Biomedical Informatics, 2 Center for Computational Medicine and Biology, 3 Michigan Center for Translational Pathology, 4 Department of Internal Medicine and 5 College of Engineering, University of Michigan, Ann Arbor, MI 48109, USA"],"affiliations":[{"raw_affiliation_string":"1 National Center for Integrative Biomedical Informatics, 2 Center for Computational Medicine and Biology, 3 Michigan Center for Translational Pathology, 4 Department of Internal Medicine and 5 College of Engineering, University of Michigan, Ann Arbor, MI 48109, USA","institution_ids":["https://openalex.org/I4210117557","https://openalex.org/I27837315"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5004460622","display_name":"James D. Cavalcoli","orcid":null},"institutions":[{"id":"https://openalex.org/I27837315","display_name":"University of Michigan","ror":"https://ror.org/00jmfr291","country_code":"US","type":"education","lineage":["https://openalex.org/I27837315"]},{"id":"https://openalex.org/I4210117557","display_name":"Michigan Center for Translational Pathology","ror":"https://ror.org/027t4kk23","country_code":"US","type":"facility","lineage":["https://openalex.org/I4210114445","https://openalex.org/I4210117557"]}],"countries":["US"],"is_corresponding":false,"raw_author_name":"James D. Cavalcoli","raw_affiliation_strings":["1 National Center for Integrative Biomedical Informatics, 2 Center for Computational Medicine and Biology, 3 Michigan Center for Translational Pathology, 4 Department of Internal Medicine and 5 College of Engineering, University of Michigan, Ann Arbor, MI 48109, USA"],"affiliations":[{"raw_affiliation_string":"1 National Center for Integrative Biomedical Informatics, 2 Center for Computational Medicine and Biology, 3 Michigan Center for Translational Pathology, 4 Department of Internal Medicine and 5 College of Engineering, University of Michigan, Ann Arbor, MI 48109, USA","institution_ids":["https://openalex.org/I4210117557","https://openalex.org/I27837315"]}]},{"author_position":"middle","author":{"id":null,"display_name":"Brian D. Athey","orcid":null},"institutions":[{"id":"https://openalex.org/I27837315","display_name":"University of Michigan","ror":"https://ror.org/00jmfr291","country_code":"US","type":"education","lineage":["https://openalex.org/I27837315"]},{"id":"https://openalex.org/I4210117557","display_name":"Michigan Center for Translational Pathology","ror":"https://ror.org/027t4kk23","country_code":"US","type":"facility","lineage":["https://openalex.org/I4210114445","https://openalex.org/I4210117557"]}],"countries":["US"],"is_corresponding":false,"raw_author_name":"Brian D. Athey","raw_affiliation_strings":["1 National Center for Integrative Biomedical Informatics, 2 Center for Computational Medicine and Biology, 3 Michigan Center for Translational Pathology, 4 Department of Internal Medicine and 5 College of Engineering, University of Michigan, Ann Arbor, MI 48109, USA"],"affiliations":[{"raw_affiliation_string":"1 National Center for Integrative Biomedical Informatics, 2 Center for Computational Medicine and Biology, 3 Michigan Center for Translational Pathology, 4 Department of Internal Medicine and 5 College of Engineering, University of Michigan, Ann Arbor, MI 48109, USA","institution_ids":["https://openalex.org/I4210117557","https://openalex.org/I27837315"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5008478119","display_name":"Gilbert S. Omenn","orcid":"https://orcid.org/0000-0002-8976-6074"},"institutions":[{"id":"https://openalex.org/I27837315","display_name":"University of Michigan","ror":"https://ror.org/00jmfr291","country_code":"US","type":"education","lineage":["https://openalex.org/I27837315"]},{"id":"https://openalex.org/I4210117557","display_name":"Michigan Center for Translational Pathology","ror":"https://ror.org/027t4kk23","country_code":"US","type":"facility","lineage":["https://openalex.org/I4210114445","https://openalex.org/I4210117557"]}],"countries":["US"],"is_corresponding":false,"raw_author_name":"Gilbert S. Omenn","raw_affiliation_strings":["1 National Center for Integrative Biomedical Informatics, 2 Center for Computational Medicine and Biology, 3 Michigan Center for Translational Pathology, 4 Department of Internal Medicine and 5 College of Engineering, University of Michigan, Ann Arbor, MI 48109, USA"],"affiliations":[{"raw_affiliation_string":"1 National Center for Integrative Biomedical Informatics, 2 Center for Computational Medicine and Biology, 3 Michigan Center for Translational Pathology, 4 Department of Internal Medicine and 5 College of Engineering, University of Michigan, Ann Arbor, MI 48109, USA","institution_ids":["https://openalex.org/I4210117557","https://openalex.org/I27837315"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5054894697","display_name":"Charles Burant","orcid":"https://orcid.org/0000-0001-9189-5003"},"institutions":[{"id":"https://openalex.org/I27837315","display_name":"University of Michigan","ror":"https://ror.org/00jmfr291","country_code":"US","type":"education","lineage":["https://openalex.org/I27837315"]},{"id":"https://openalex.org/I4210117557","display_name":"Michigan Center for Translational Pathology","ror":"https://ror.org/027t4kk23","country_code":"US","type":"facility","lineage":["https://openalex.org/I4210114445","https://openalex.org/I4210117557"]}],"countries":["US"],"is_corresponding":false,"raw_author_name":"Charles F. Burant","raw_affiliation_strings":["1 National Center for Integrative Biomedical Informatics, 2 Center for Computational Medicine and Biology, 3 Michigan Center for Translational Pathology, 4 Department of Internal Medicine and 5 College of Engineering, University of Michigan, Ann Arbor, MI 48109, USA"],"affiliations":[{"raw_affiliation_string":"1 National Center for Integrative Biomedical Informatics, 2 Center for Computational Medicine and Biology, 3 Michigan Center for Translational Pathology, 4 Department of Internal Medicine and 5 College of Engineering, University of Michigan, Ann Arbor, MI 48109, USA","institution_ids":["https://openalex.org/I4210117557","https://openalex.org/I27837315"]}]},{"author_position":"last","author":{"id":"https://openalex.org/A5090550596","display_name":"H. V. Jagadish","orcid":"https://orcid.org/0000-0003-0724-5214"},"institutions":[{"id":"https://openalex.org/I27837315","display_name":"University of Michigan","ror":"https://ror.org/00jmfr291","country_code":"US","type":"education","lineage":["https://openalex.org/I27837315"]},{"id":"https://openalex.org/I4210117557","display_name":"Michigan Center for Translational Pathology","ror":"https://ror.org/027t4kk23","country_code":"US","type":"facility","lineage":["https://openalex.org/I4210114445","https://openalex.org/I4210117557"]}],"countries":["US"],"is_corresponding":false,"raw_author_name":"H. V. Jagadish","raw_affiliation_strings":["1 National Center for Integrative Biomedical Informatics, 2 Center for Computational Medicine and Biology, 3 Michigan Center for Translational Pathology, 4 Department of Internal Medicine and 5 College of Engineering, University of Michigan, Ann Arbor, MI 48109, USA"],"affiliations":[{"raw_affiliation_string":"1 National Center for Integrative Biomedical Informatics, 2 Center for Computational Medicine and Biology, 3 Michigan Center for Translational Pathology, 4 Department of Internal Medicine and 5 College of Engineering, University of Michigan, Ann Arbor, MI 48109, USA","institution_ids":["https://openalex.org/I4210117557","https://openalex.org/I27837315"]}]}],"institutions":[],"countries_distinct_count":1,"institutions_distinct_count":11,"corresponding_author_ids":["https://openalex.org/A5101632785"],"corresponding_institution_ids":["https://openalex.org/I27837315","https://openalex.org/I4210117557"],"apc_list":{"value":3618,"currency":"USD","value_usd":3618},"apc_paid":null,"fwci":3.1104,"has_fulltext":true,"cited_by_count":231,"citation_normalized_percentile":{"value":0.92088018,"is_in_top_1_percent":false,"is_in_top_10_percent":true},"cited_by_percentile_year":{"min":99,"max":100},"biblio":{"volume":"26","issue":"7","first_page":"971","last_page":"973"},"is_retracted":false,"is_paratext":false,"is_xpac":false,"primary_topic":{"id":"https://openalex.org/T10887","display_name":"Bioinformatics and Genomic Networks","score":0.9994999766349792,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},"topics":[{"id":"https://openalex.org/T10887","display_name":"Bioinformatics and Genomic Networks","score":0.9994999766349792,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},{"id":"https://openalex.org/T10932","display_name":"Microbial Metabolic Engineering and Bioproduction","score":0.9993000030517578,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},{"id":"https://openalex.org/T10836","display_name":"Metabolomics and Mass Spectrometry Studies","score":0.9991000294685364,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}}],"keywords":[{"id":"https://openalex.org/keywords/upload","display_name":"Upload","score":0.8092125654220581},{"id":"https://openalex.org/keywords/computer-science","display_name":"Computer science","score":0.7267370820045471},{"id":"https://openalex.org/keywords/context","display_name":"Context (archaeology)","score":0.644952654838562},{"id":"https://openalex.org/keywords/metabolic-network","display_name":"Metabolic network","score":0.5268845558166504},{"id":"https://openalex.org/keywords/plug-in","display_name":"Plug-in","score":0.5038854479789734},{"id":"https://openalex.org/keywords/visualization","display_name":"Visualization","score":0.5013339519500732},{"id":"https://openalex.org/keywords/metabolomics","display_name":"Metabolomics","score":0.4512171745300293},{"id":"https://openalex.org/keywords/data-mining","display_name":"Data mining","score":0.4115052819252014},{"id":"https://openalex.org/keywords/computational-biology","display_name":"Computational biology","score":0.3909980058670044},{"id":"https://openalex.org/keywords/information-retrieval","display_name":"Information retrieval","score":0.369964599609375},{"id":"https://openalex.org/keywords/database","display_name":"Database","score":0.3404316306114197},{"id":"https://openalex.org/keywords/bioinformatics","display_name":"Bioinformatics","score":0.2945725619792938},{"id":"https://openalex.org/keywords/world-wide-web","display_name":"World Wide Web","score":0.21010428667068481},{"id":"https://openalex.org/keywords/biology","display_name":"Biology","score":0.17969876527786255}],"concepts":[{"id":"https://openalex.org/C71901391","wikidata":"https://www.wikidata.org/wiki/Q7126699","display_name":"Upload","level":2,"score":0.8092125654220581},{"id":"https://openalex.org/C41008148","wikidata":"https://www.wikidata.org/wiki/Q21198","display_name":"Computer science","level":0,"score":0.7267370820045471},{"id":"https://openalex.org/C2779343474","wikidata":"https://www.wikidata.org/wiki/Q3109175","display_name":"Context (archaeology)","level":2,"score":0.644952654838562},{"id":"https://openalex.org/C101810790","wikidata":"https://www.wikidata.org/wiki/Q2263094","display_name":"Metabolic network","level":2,"score":0.5268845558166504},{"id":"https://openalex.org/C4924752","wikidata":"https://www.wikidata.org/wiki/Q184148","display_name":"Plug-in","level":2,"score":0.5038854479789734},{"id":"https://openalex.org/C36464697","wikidata":"https://www.wikidata.org/wiki/Q451553","display_name":"Visualization","level":2,"score":0.5013339519500732},{"id":"https://openalex.org/C21565614","wikidata":"https://www.wikidata.org/wiki/Q12149006","display_name":"Metabolomics","level":2,"score":0.4512171745300293},{"id":"https://openalex.org/C124101348","wikidata":"https://www.wikidata.org/wiki/Q172491","display_name":"Data mining","level":1,"score":0.4115052819252014},{"id":"https://openalex.org/C70721500","wikidata":"https://www.wikidata.org/wiki/Q177005","display_name":"Computational biology","level":1,"score":0.3909980058670044},{"id":"https://openalex.org/C23123220","wikidata":"https://www.wikidata.org/wiki/Q816826","display_name":"Information retrieval","level":1,"score":0.369964599609375},{"id":"https://openalex.org/C77088390","wikidata":"https://www.wikidata.org/wiki/Q8513","display_name":"Database","level":1,"score":0.3404316306114197},{"id":"https://openalex.org/C60644358","wikidata":"https://www.wikidata.org/wiki/Q128570","display_name":"Bioinformatics","level":1,"score":0.2945725619792938},{"id":"https://openalex.org/C136764020","wikidata":"https://www.wikidata.org/wiki/Q466","display_name":"World Wide Web","level":1,"score":0.21010428667068481},{"id":"https://openalex.org/C86803240","wikidata":"https://www.wikidata.org/wiki/Q420","display_name":"Biology","level":0,"score":0.17969876527786255},{"id":"https://openalex.org/C199360897","wikidata":"https://www.wikidata.org/wiki/Q9143","display_name":"Programming language","level":1,"score":0.0},{"id":"https://openalex.org/C151730666","wikidata":"https://www.wikidata.org/wiki/Q7205","display_name":"Paleontology","level":1,"score":0.0}],"mesh":[{"descriptor_ui":"D006801","descriptor_name":"Humans","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D006801","descriptor_name":"Humans","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D006801","descriptor_name":"Humans","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D012984","descriptor_name":"Software","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D012984","descriptor_name":"Software","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D012984","descriptor_name":"Software","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D016208","descriptor_name":"Databases, Factual","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D016208","descriptor_name":"Databases, Factual","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D016208","descriptor_name":"Databases, Factual","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D053858","descriptor_name":"Metabolic Networks and Pathways","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D053858","descriptor_name":"Metabolic Networks and Pathways","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D053858","descriptor_name":"Metabolic Networks and Pathways","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D055432","descriptor_name":"Metabolomics","qualifier_ui":"Q000379","qualifier_name":"methods","is_major_topic":false},{"descriptor_ui":"D055432","descriptor_name":"Metabolomics","qualifier_ui":"Q000379","qualifier_name":"methods","is_major_topic":false},{"descriptor_ui":"D055432","descriptor_name":"Metabolomics","qualifier_ui":"Q000379","qualifier_name":"methods","is_major_topic":false}],"locations_count":3,"locations":[{"id":"doi:10.1093/bioinformatics/btq048","is_oa":true,"landing_page_url":"https://doi.org/10.1093/bioinformatics/btq048","pdf_url":"https://academic.oup.com/bioinformatics/article-pdf/26/7/971/48856391/bioinformatics_26_7_971.pdf","source":{"id":"https://openalex.org/S52395412","display_name":"Bioinformatics","issn_l":"1367-4803","issn":["1367-4803","1367-4811"],"is_oa":false,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310311648","host_organization_name":"Oxford University Press","host_organization_lineage":["https://openalex.org/P4310311648","https://openalex.org/P4310311647"],"host_organization_lineage_names":["Oxford University Press","University of Oxford"],"type":"journal"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Bioinformatics","raw_type":"journal-article"},{"id":"pmid:20139469","is_oa":false,"landing_page_url":"https://pubmed.ncbi.nlm.nih.gov/20139469","pdf_url":null,"source":{"id":"https://openalex.org/S4306525036","display_name":"PubMed","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I1299303238","host_organization_name":"National Institutes of Health","host_organization_lineage":["https://openalex.org/I1299303238"],"host_organization_lineage_names":[],"type":"repository"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Bioinformatics (Oxford, England)","raw_type":null},{"id":"pmh:oai:europepmc.org:2077184","is_oa":false,"landing_page_url":"https://www.ncbi.nlm.nih.gov/pmc/articles/2844990","pdf_url":null,"source":{"id":"https://openalex.org/S4306400806","display_name":"Europe PMC (PubMed Central)","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I1303153112","host_organization_name":"European Bioinformatics Institute","host_organization_lineage":["https://openalex.org/I1303153112"],"host_organization_lineage_names":[],"type":"repository"},"license":null,"license_id":null,"version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":null,"raw_type":"Text"}],"best_oa_location":{"id":"doi:10.1093/bioinformatics/btq048","is_oa":true,"landing_page_url":"https://doi.org/10.1093/bioinformatics/btq048","pdf_url":"https://academic.oup.com/bioinformatics/article-pdf/26/7/971/48856391/bioinformatics_26_7_971.pdf","source":{"id":"https://openalex.org/S52395412","display_name":"Bioinformatics","issn_l":"1367-4803","issn":["1367-4803","1367-4811"],"is_oa":false,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310311648","host_organization_name":"Oxford University Press","host_organization_lineage":["https://openalex.org/P4310311648","https://openalex.org/P4310311647"],"host_organization_lineage_names":["Oxford University Press","University of Oxford"],"type":"journal"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Bioinformatics","raw_type":"journal-article"},"sustainable_development_goals":[],"awards":[{"id":"https://openalex.org/G6118713948","display_name":null,"funder_award_id":"DK079084","funder_id":"https://openalex.org/F4320332161","funder_display_name":"National Institutes of Health"}],"funders":[{"id":"https://openalex.org/F4320332161","display_name":"National Institutes of Health","ror":"https://ror.org/01cwqze88"}],"has_content":{"grobid_xml":true,"pdf":true},"content_urls":{"pdf":"https://content.openalex.org/works/W2165944862.pdf","grobid_xml":"https://content.openalex.org/works/W2165944862.grobid-xml"},"referenced_works_count":14,"referenced_works":["https://openalex.org/W295952358","https://openalex.org/W1561844010","https://openalex.org/W1584273325","https://openalex.org/W2019240775","https://openalex.org/W2053385401","https://openalex.org/W2055593066","https://openalex.org/W2131735363","https://openalex.org/W2135435176","https://openalex.org/W2136482324","https://openalex.org/W2150700412","https://openalex.org/W2153020710","https://openalex.org/W2159675211","https://openalex.org/W2163841023","https://openalex.org/W2165674132"],"related_works":["https://openalex.org/W4287378204","https://openalex.org/W2981957539","https://openalex.org/W47352601","https://openalex.org/W2545422590","https://openalex.org/W4240705470","https://openalex.org/W2945311252","https://openalex.org/W631546281","https://openalex.org/W1989722157","https://openalex.org/W4321505103","https://openalex.org/W2799517538"],"abstract_inverted_index":{"Metscape":[0],"can":[1],"be":[2],"installed":[3],"from":[4],"within":[5],"Cytoscape":[6],"2.6.x":[7],"under":[8],"'Network":[9],"and":[10],"Attribute":[11],"I/O'":[12],"category.":[13],"For":[14],"more":[15],"information,":[16],"please":[17],"visit":[18],"http://metscape.ncibi.org/tryplugin.html.":[19]},"counts_by_year":[{"year":2026,"cited_by_count":3},{"year":2025,"cited_by_count":16},{"year":2024,"cited_by_count":10},{"year":2023,"cited_by_count":22},{"year":2022,"cited_by_count":23},{"year":2021,"cited_by_count":25},{"year":2020,"cited_by_count":21},{"year":2019,"cited_by_count":16},{"year":2018,"cited_by_count":25},{"year":2017,"cited_by_count":10},{"year":2016,"cited_by_count":12},{"year":2015,"cited_by_count":13},{"year":2014,"cited_by_count":12},{"year":2013,"cited_by_count":7},{"year":2012,"cited_by_count":7}],"updated_date":"2026-03-25T23:56:10.502304","created_date":"2025-10-10T00:00:00"}
