{"id":"https://openalex.org/W2067759916","doi":"https://doi.org/10.1093/bioinformatics/btp715","title":"Xper2: introducing <i>e</i>-taxonomy","display_name":"Xper2: introducing <i>e</i>-taxonomy","publication_year":2010,"publication_date":"2010-01-06","ids":{"openalex":"https://openalex.org/W2067759916","doi":"https://doi.org/10.1093/bioinformatics/btp715","mag":"2067759916","pmid":"https://pubmed.ncbi.nlm.nih.gov/20053842"},"language":"en","primary_location":{"id":"doi:10.1093/bioinformatics/btp715","is_oa":true,"landing_page_url":"https://doi.org/10.1093/bioinformatics/btp715","pdf_url":"https://academic.oup.com/bioinformatics/article-pdf/26/5/703/48860412/bioinformatics_26_5_703.pdf","source":{"id":"https://openalex.org/S52395412","display_name":"Bioinformatics","issn_l":"1367-4803","issn":["1367-4803","1367-4811"],"is_oa":false,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310311648","host_organization_name":"Oxford University Press","host_organization_lineage":["https://openalex.org/P4310311648","https://openalex.org/P4310311647"],"host_organization_lineage_names":["Oxford University Press","University of Oxford"],"type":"journal"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Bioinformatics","raw_type":"journal-article"},"type":"article","indexed_in":["crossref","doaj","pubmed"],"open_access":{"is_oa":true,"oa_status":"bronze","oa_url":"https://academic.oup.com/bioinformatics/article-pdf/26/5/703/48860412/bioinformatics_26_5_703.pdf","any_repository_has_fulltext":false},"authorships":[{"author_position":"first","author":{"id":"https://openalex.org/A5072439286","display_name":"Visotheary Ung","orcid":"https://orcid.org/0000-0002-4049-0820"},"institutions":[{"id":"https://openalex.org/I39804081","display_name":"Sorbonne Universit\u00e9","ror":"https://ror.org/02en5vm52","country_code":"FR","type":"education","lineage":["https://openalex.org/I39804081"]},{"id":"https://openalex.org/I4387155127","display_name":"Centre de recherche en pal\u00e9ontologie - Paris","ror":"https://ror.org/05ax2x637","country_code":null,"type":"facility","lineage":["https://openalex.org/I1294671590","https://openalex.org/I39804081","https://openalex.org/I4210123595","https://openalex.org/I4387155127"]}],"countries":["FR"],"is_corresponding":true,"raw_author_name":"Visotheary Ung","raw_affiliation_strings":["UPMC, Universit\u00e9 Pierre et Marie Curie, UMR 7207 (CR2P), Centre de Recherche sur la Pal\u00e9obiodiversit\u00e9 et les Pal\u00e9oenvironnements, Paris, France"],"affiliations":[{"raw_affiliation_string":"UPMC, Universit\u00e9 Pierre et Marie Curie, UMR 7207 (CR2P), Centre de Recherche sur la Pal\u00e9obiodiversit\u00e9 et les Pal\u00e9oenvironnements, Paris, France","institution_ids":["https://openalex.org/I39804081","https://openalex.org/I4387155127"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5026694600","display_name":"Guillaume Dubus","orcid":null},"institutions":[{"id":"https://openalex.org/I39804081","display_name":"Sorbonne Universit\u00e9","ror":"https://ror.org/02en5vm52","country_code":"FR","type":"education","lineage":["https://openalex.org/I39804081"]},{"id":"https://openalex.org/I4387155127","display_name":"Centre de recherche en pal\u00e9ontologie - Paris","ror":"https://ror.org/05ax2x637","country_code":null,"type":"facility","lineage":["https://openalex.org/I1294671590","https://openalex.org/I39804081","https://openalex.org/I4210123595","https://openalex.org/I4387155127"]}],"countries":["FR"],"is_corresponding":false,"raw_author_name":"Guillaume Dubus","raw_affiliation_strings":["UPMC, Universit\u00e9 Pierre et Marie Curie, UMR 7207 (CR2P), Centre de Recherche sur la Pal\u00e9obiodiversit\u00e9 et les Pal\u00e9oenvironnements, Paris, France"],"affiliations":[{"raw_affiliation_string":"UPMC, Universit\u00e9 Pierre et Marie Curie, UMR 7207 (CR2P), Centre de Recherche sur la Pal\u00e9obiodiversit\u00e9 et les Pal\u00e9oenvironnements, Paris, France","institution_ids":["https://openalex.org/I39804081","https://openalex.org/I4387155127"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5109082785","display_name":"Ren\u00e9 Zarag\u00fceta\u2010Bagils","orcid":null},"institutions":[{"id":"https://openalex.org/I39804081","display_name":"Sorbonne Universit\u00e9","ror":"https://ror.org/02en5vm52","country_code":"FR","type":"education","lineage":["https://openalex.org/I39804081"]},{"id":"https://openalex.org/I4387155127","display_name":"Centre de recherche en pal\u00e9ontologie - Paris","ror":"https://ror.org/05ax2x637","country_code":null,"type":"facility","lineage":["https://openalex.org/I1294671590","https://openalex.org/I39804081","https://openalex.org/I4210123595","https://openalex.org/I4387155127"]}],"countries":["FR"],"is_corresponding":false,"raw_author_name":"Ren\u00e9 Zarag\u00fceta-Bagils","raw_affiliation_strings":["UPMC, Universit\u00e9 Pierre et Marie Curie, UMR 7207 (CR2P), Centre de Recherche sur la Pal\u00e9obiodiversit\u00e9 et les Pal\u00e9oenvironnements, Paris, France"],"affiliations":[{"raw_affiliation_string":"UPMC, Universit\u00e9 Pierre et Marie Curie, UMR 7207 (CR2P), Centre de Recherche sur la Pal\u00e9obiodiversit\u00e9 et les Pal\u00e9oenvironnements, Paris, France","institution_ids":["https://openalex.org/I39804081","https://openalex.org/I4387155127"]}]},{"author_position":"last","author":{"id":"https://openalex.org/A5088633838","display_name":"R\u00e9gine Vignes\u2010Lebbe","orcid":"https://orcid.org/0000-0002-6912-6248"},"institutions":[{"id":"https://openalex.org/I39804081","display_name":"Sorbonne Universit\u00e9","ror":"https://ror.org/02en5vm52","country_code":"FR","type":"education","lineage":["https://openalex.org/I39804081"]},{"id":"https://openalex.org/I4387155127","display_name":"Centre de recherche en pal\u00e9ontologie - Paris","ror":"https://ror.org/05ax2x637","country_code":null,"type":"facility","lineage":["https://openalex.org/I1294671590","https://openalex.org/I39804081","https://openalex.org/I4210123595","https://openalex.org/I4387155127"]}],"countries":["FR"],"is_corresponding":false,"raw_author_name":"R\u00e9gine Vignes-Lebbe","raw_affiliation_strings":["UPMC, Universit\u00e9 Pierre et Marie Curie, UMR 7207 (CR2P), Centre de Recherche sur la Pal\u00e9obiodiversit\u00e9 et les Pal\u00e9oenvironnements, Paris, France"],"affiliations":[{"raw_affiliation_string":"UPMC, Universit\u00e9 Pierre et Marie Curie, UMR 7207 (CR2P), Centre de Recherche sur la Pal\u00e9obiodiversit\u00e9 et les Pal\u00e9oenvironnements, Paris, France","institution_ids":["https://openalex.org/I39804081","https://openalex.org/I4387155127"]}]}],"institutions":[],"countries_distinct_count":1,"institutions_distinct_count":4,"corresponding_author_ids":["https://openalex.org/A5072439286"],"corresponding_institution_ids":["https://openalex.org/I39804081","https://openalex.org/I4387155127"],"apc_list":{"value":3618,"currency":"USD","value_usd":3618},"apc_paid":null,"fwci":7.8745,"has_fulltext":true,"cited_by_count":73,"citation_normalized_percentile":{"value":0.9665664,"is_in_top_1_percent":false,"is_in_top_10_percent":true},"cited_by_percentile_year":{"min":94,"max":99},"biblio":{"volume":"26","issue":"5","first_page":"703","last_page":"704"},"is_retracted":false,"is_paratext":false,"is_xpac":false,"primary_topic":{"id":"https://openalex.org/T10895","display_name":"Species Distribution and Climate Change","score":0.9958999752998352,"subfield":{"id":"https://openalex.org/subfields/2302","display_name":"Ecological Modeling"},"field":{"id":"https://openalex.org/fields/23","display_name":"Environmental Science"},"domain":{"id":"https://openalex.org/domains/3","display_name":"Physical Sciences"}},"topics":[{"id":"https://openalex.org/T10895","display_name":"Species Distribution and Climate Change","score":0.9958999752998352,"subfield":{"id":"https://openalex.org/subfields/2302","display_name":"Ecological Modeling"},"field":{"id":"https://openalex.org/fields/23","display_name":"Environmental Science"},"domain":{"id":"https://openalex.org/domains/3","display_name":"Physical Sciences"}},{"id":"https://openalex.org/T12012","display_name":"Diatoms and Algae Research","score":0.9059000015258789,"subfield":{"id":"https://openalex.org/subfields/2502","display_name":"Biomaterials"},"field":{"id":"https://openalex.org/fields/25","display_name":"Materials Science"},"domain":{"id":"https://openalex.org/domains/3","display_name":"Physical Sciences"}}],"keywords":[{"id":"https://openalex.org/keywords/computer-science","display_name":"Computer science","score":0.6615725755691528},{"id":"https://openalex.org/keywords/identification","display_name":"Identification (biology)","score":0.5989372730255127},{"id":"https://openalex.org/keywords/taxonomy","display_name":"Taxonomy (biology)","score":0.5737572312355042},{"id":"https://openalex.org/keywords/software","display_name":"Software","score":0.5632144212722778},{"id":"https://openalex.org/keywords/world-wide-web","display_name":"World Wide Web","score":0.5514841079711914},{"id":"https://openalex.org/keywords/biology","display_name":"Biology","score":0.22779208421707153},{"id":"https://openalex.org/keywords/ecology","display_name":"Ecology","score":0.16966137290000916},{"id":"https://openalex.org/keywords/operating-system","display_name":"Operating system","score":0.07579505443572998}],"concepts":[{"id":"https://openalex.org/C41008148","wikidata":"https://www.wikidata.org/wiki/Q21198","display_name":"Computer science","level":0,"score":0.6615725755691528},{"id":"https://openalex.org/C116834253","wikidata":"https://www.wikidata.org/wiki/Q2039217","display_name":"Identification (biology)","level":2,"score":0.5989372730255127},{"id":"https://openalex.org/C58642233","wikidata":"https://www.wikidata.org/wiki/Q8269924","display_name":"Taxonomy (biology)","level":2,"score":0.5737572312355042},{"id":"https://openalex.org/C2777904410","wikidata":"https://www.wikidata.org/wiki/Q7397","display_name":"Software","level":2,"score":0.5632144212722778},{"id":"https://openalex.org/C136764020","wikidata":"https://www.wikidata.org/wiki/Q466","display_name":"World Wide Web","level":1,"score":0.5514841079711914},{"id":"https://openalex.org/C86803240","wikidata":"https://www.wikidata.org/wiki/Q420","display_name":"Biology","level":0,"score":0.22779208421707153},{"id":"https://openalex.org/C18903297","wikidata":"https://www.wikidata.org/wiki/Q7150","display_name":"Ecology","level":1,"score":0.16966137290000916},{"id":"https://openalex.org/C111919701","wikidata":"https://www.wikidata.org/wiki/Q9135","display_name":"Operating system","level":1,"score":0.07579505443572998}],"mesh":[{"descriptor_ui":"D002965","descriptor_name":"Classification","qualifier_ui":"Q000379","qualifier_name":"methods","is_major_topic":false},{"descriptor_ui":"D002965","descriptor_name":"Classification","qualifier_ui":"Q000379","qualifier_name":"methods","is_major_topic":false},{"descriptor_ui":"D002965","descriptor_name":"Classification","qualifier_ui":"Q000379","qualifier_name":"methods","is_major_topic":false},{"descriptor_ui":"D003196","descriptor_name":"Computer Graphics","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D003196","descriptor_name":"Computer Graphics","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D003196","descriptor_name":"Computer Graphics","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D012984","descriptor_name":"Software","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D012984","descriptor_name":"Software","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D012984","descriptor_name":"Software","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D016208","descriptor_name":"Databases, Factual","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D016208","descriptor_name":"Databases, Factual","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D016208","descriptor_name":"Databases, Factual","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D016247","descriptor_name":"Information Storage and Retrieval","qualifier_ui":"Q000379","qualifier_name":"methods","is_major_topic":false},{"descriptor_ui":"D016247","descriptor_name":"Information Storage and Retrieval","qualifier_ui":"Q000379","qualifier_name":"methods","is_major_topic":false},{"descriptor_ui":"D016247","descriptor_name":"Information Storage and Retrieval","qualifier_ui":"Q000379","qualifier_name":"methods","is_major_topic":false},{"descriptor_ui":"D020407","descriptor_name":"Internet","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D020407","descriptor_name":"Internet","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D020407","descriptor_name":"Internet","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false}],"locations_count":3,"locations":[{"id":"doi:10.1093/bioinformatics/btp715","is_oa":true,"landing_page_url":"https://doi.org/10.1093/bioinformatics/btp715","pdf_url":"https://academic.oup.com/bioinformatics/article-pdf/26/5/703/48860412/bioinformatics_26_5_703.pdf","source":{"id":"https://openalex.org/S52395412","display_name":"Bioinformatics","issn_l":"1367-4803","issn":["1367-4803","1367-4811"],"is_oa":false,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310311648","host_organization_name":"Oxford University Press","host_organization_lineage":["https://openalex.org/P4310311648","https://openalex.org/P4310311647"],"host_organization_lineage_names":["Oxford University Press","University of Oxford"],"type":"journal"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Bioinformatics","raw_type":"journal-article"},{"id":"pmid:20053842","is_oa":false,"landing_page_url":"https://pubmed.ncbi.nlm.nih.gov/20053842","pdf_url":null,"source":{"id":"https://openalex.org/S4306525036","display_name":"PubMed","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I1299303238","host_organization_name":"National Institutes of Health","host_organization_lineage":["https://openalex.org/I1299303238"],"host_organization_lineage_names":[],"type":"repository"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Bioinformatics (Oxford, England)","raw_type":null},{"id":"pmh:oai:HAL:hal-02612826v1","is_oa":false,"landing_page_url":"https://hal.science/hal-02612826","pdf_url":null,"source":{"id":"https://openalex.org/S4306402512","display_name":"HAL (Le Centre pour la Communication Scientifique Directe)","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I1294671590","host_organization_name":"Centre National de la Recherche Scientifique","host_organization_lineage":["https://openalex.org/I1294671590"],"host_organization_lineage_names":[],"type":"repository"},"license":null,"license_id":null,"version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":"Bioinformatics, 2010, 26 (5), pp.703-704. &#x27E8;10.1093/bioinformatics/btp715&#x27E9;","raw_type":"Journal articles"}],"best_oa_location":{"id":"doi:10.1093/bioinformatics/btp715","is_oa":true,"landing_page_url":"https://doi.org/10.1093/bioinformatics/btp715","pdf_url":"https://academic.oup.com/bioinformatics/article-pdf/26/5/703/48860412/bioinformatics_26_5_703.pdf","source":{"id":"https://openalex.org/S52395412","display_name":"Bioinformatics","issn_l":"1367-4803","issn":["1367-4803","1367-4811"],"is_oa":false,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310311648","host_organization_name":"Oxford University Press","host_organization_lineage":["https://openalex.org/P4310311648","https://openalex.org/P4310311647"],"host_organization_lineage_names":["Oxford University Press","University of Oxford"],"type":"journal"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Bioinformatics","raw_type":"journal-article"},"sustainable_development_goals":[{"id":"https://metadata.un.org/sdg/15","score":0.6499999761581421,"display_name":"Life in Land"}],"awards":[],"funders":[{"id":"https://openalex.org/F4320322892","display_name":"Centre National de la Recherche Scientifique","ror":"https://ror.org/02feahw73"}],"has_content":{"pdf":true,"grobid_xml":true},"content_urls":{"pdf":"https://content.openalex.org/works/W2067759916.pdf","grobid_xml":"https://content.openalex.org/works/W2067759916.grobid-xml"},"referenced_works_count":9,"referenced_works":["https://openalex.org/W1970872025","https://openalex.org/W2002421008","https://openalex.org/W2009664200","https://openalex.org/W2011231296","https://openalex.org/W2027165188","https://openalex.org/W2046134920","https://openalex.org/W2158425855","https://openalex.org/W2790843714","https://openalex.org/W4242512332"],"related_works":["https://openalex.org/W2748952813","https://openalex.org/W2390279801","https://openalex.org/W2358668433","https://openalex.org/W2376932109","https://openalex.org/W2001405890","https://openalex.org/W2382290278","https://openalex.org/W2350741829","https://openalex.org/W2530322880","https://openalex.org/W1596801655","https://openalex.org/W2359140296"],"abstract_inverted_index":{"Xper(2)":[0],"software":[1],"can":[2],"be":[3],"freely":[4],"downloaded":[5],"at":[6],"http://lis-upmc.snv.jussieu.fr/lis/?q=en/resources/softwares/xper2":[7]},"counts_by_year":[{"year":2025,"cited_by_count":2},{"year":2024,"cited_by_count":5},{"year":2023,"cited_by_count":2},{"year":2022,"cited_by_count":4},{"year":2021,"cited_by_count":8},{"year":2020,"cited_by_count":3},{"year":2019,"cited_by_count":2},{"year":2018,"cited_by_count":4},{"year":2017,"cited_by_count":6},{"year":2016,"cited_by_count":6},{"year":2015,"cited_by_count":4},{"year":2014,"cited_by_count":7},{"year":2013,"cited_by_count":5},{"year":2012,"cited_by_count":5}],"updated_date":"2026-03-10T16:38:18.471706","created_date":"2016-06-24T00:00:00"}