{"id":"https://openalex.org/W2122606427","doi":"https://doi.org/10.1093/bioinformatics/btp696","title":"pegas: an R package for population genetics with an integrated\u2013modular approach","display_name":"pegas: an R package for population genetics with an integrated\u2013modular approach","publication_year":2010,"publication_date":"2010-01-16","ids":{"openalex":"https://openalex.org/W2122606427","doi":"https://doi.org/10.1093/bioinformatics/btp696","mag":"2122606427","pmid":"https://pubmed.ncbi.nlm.nih.gov/20080509"},"language":"en","primary_location":{"id":"doi:10.1093/bioinformatics/btp696","is_oa":true,"landing_page_url":"https://doi.org/10.1093/bioinformatics/btp696","pdf_url":"https://academic.oup.com/bioinformatics/article-pdf/26/3/419/48860629/bioinformatics_26_3_419.pdf","source":{"id":"https://openalex.org/S52395412","display_name":"Bioinformatics","issn_l":"1367-4803","issn":["1367-4803","1367-4811"],"is_oa":false,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310311648","host_organization_name":"Oxford University Press","host_organization_lineage":["https://openalex.org/P4310311648","https://openalex.org/P4310311647"],"host_organization_lineage_names":["Oxford University Press","University of Oxford"],"type":"journal"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Bioinformatics","raw_type":"journal-article"},"type":"article","indexed_in":["crossref","doaj","pubmed"],"open_access":{"is_oa":true,"oa_status":"bronze","oa_url":"https://academic.oup.com/bioinformatics/article-pdf/26/3/419/48860629/bioinformatics_26_3_419.pdf","any_repository_has_fulltext":false},"authorships":[{"author_position":"first","author":{"id":"https://openalex.org/A5091069787","display_name":"Emmanuel Paradis","orcid":"https://orcid.org/0000-0003-3092-2199"},"institutions":[{"id":"https://openalex.org/I4210166444","display_name":"Institut de Recherche pour le D\u00e9veloppement","ror":"https://ror.org/05q3vnk25","country_code":"FR","type":"funder","lineage":["https://openalex.org/I2802818602","https://openalex.org/I4210090127","https://openalex.org/I4210131494","https://openalex.org/I4210166444"]}],"countries":["FR"],"is_corresponding":true,"raw_author_name":"Emmanuel Paradis","raw_affiliation_strings":["Institut de Recherche pour le D\u00e9veloppement, UR175 CAVIAR, BP 5095, 361 rue Jean-Fran\u00e7ois Breton, F-34196 Montpellier C\u00e9dex 5, France"],"affiliations":[{"raw_affiliation_string":"Institut de Recherche pour le D\u00e9veloppement, UR175 CAVIAR, BP 5095, 361 rue Jean-Fran\u00e7ois Breton, F-34196 Montpellier C\u00e9dex 5, France","institution_ids":["https://openalex.org/I4210166444"]}]}],"institutions":[],"countries_distinct_count":1,"institutions_distinct_count":1,"corresponding_author_ids":["https://openalex.org/A5091069787"],"corresponding_institution_ids":["https://openalex.org/I4210166444"],"apc_list":{"value":3618,"currency":"USD","value_usd":3618},"apc_paid":null,"fwci":15.1799,"has_fulltext":true,"cited_by_count":2637,"citation_normalized_percentile":{"value":0.99303011,"is_in_top_1_percent":true,"is_in_top_10_percent":true},"cited_by_percentile_year":{"min":99,"max":100},"biblio":{"volume":"26","issue":"3","first_page":"419","last_page":"420"},"is_retracted":false,"is_paratext":false,"is_xpac":false,"primary_topic":{"id":"https://openalex.org/T11468","display_name":"Genetic Mapping and Diversity in Plants and Animals","score":0.9990000128746033,"subfield":{"id":"https://openalex.org/subfields/1311","display_name":"Genetics"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},"topics":[{"id":"https://openalex.org/T11468","display_name":"Genetic Mapping and Diversity in Plants and Animals","score":0.9990000128746033,"subfield":{"id":"https://openalex.org/subfields/1311","display_name":"Genetics"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},{"id":"https://openalex.org/T10012","display_name":"Genetic diversity and population structure","score":0.9983999729156494,"subfield":{"id":"https://openalex.org/subfields/1311","display_name":"Genetics"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},{"id":"https://openalex.org/T10594","display_name":"Genetic and phenotypic traits in livestock","score":0.9973000288009644,"subfield":{"id":"https://openalex.org/subfields/1311","display_name":"Genetics"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}}],"keywords":[{"id":"https://openalex.org/keywords/modular-design","display_name":"Modular design","score":0.7456880211830139},{"id":"https://openalex.org/keywords/r-package","display_name":"R package","score":0.7091639041900635},{"id":"https://openalex.org/keywords/population","display_name":"Population","score":0.5971316695213318},{"id":"https://openalex.org/keywords/computer-science","display_name":"Computer science","score":0.5920130610466003},{"id":"https://openalex.org/keywords/software","display_name":"Software","score":0.5886778831481934},{"id":"https://openalex.org/keywords/software-package","display_name":"Software package","score":0.5179187655448914},{"id":"https://openalex.org/keywords/web-application","display_name":"Web application","score":0.46764135360717773},{"id":"https://openalex.org/keywords/world-wide-web","display_name":"World Wide Web","score":0.24218621850013733},{"id":"https://openalex.org/keywords/programming-language","display_name":"Programming language","score":0.23368707299232483}],"concepts":[{"id":"https://openalex.org/C101468663","wikidata":"https://www.wikidata.org/wiki/Q1620158","display_name":"Modular design","level":2,"score":0.7456880211830139},{"id":"https://openalex.org/C2984074130","wikidata":"https://www.wikidata.org/wiki/Q73539779","display_name":"R package","level":2,"score":0.7091639041900635},{"id":"https://openalex.org/C2908647359","wikidata":"https://www.wikidata.org/wiki/Q2625603","display_name":"Population","level":2,"score":0.5971316695213318},{"id":"https://openalex.org/C41008148","wikidata":"https://www.wikidata.org/wiki/Q21198","display_name":"Computer science","level":0,"score":0.5920130610466003},{"id":"https://openalex.org/C2777904410","wikidata":"https://www.wikidata.org/wiki/Q7397","display_name":"Software","level":2,"score":0.5886778831481934},{"id":"https://openalex.org/C3020440742","wikidata":"https://www.wikidata.org/wiki/Q1176855","display_name":"Software package","level":3,"score":0.5179187655448914},{"id":"https://openalex.org/C118643609","wikidata":"https://www.wikidata.org/wiki/Q189210","display_name":"Web application","level":2,"score":0.46764135360717773},{"id":"https://openalex.org/C136764020","wikidata":"https://www.wikidata.org/wiki/Q466","display_name":"World Wide Web","level":1,"score":0.24218621850013733},{"id":"https://openalex.org/C199360897","wikidata":"https://www.wikidata.org/wiki/Q9143","display_name":"Programming language","level":1,"score":0.23368707299232483},{"id":"https://openalex.org/C144024400","wikidata":"https://www.wikidata.org/wiki/Q21201","display_name":"Sociology","level":0,"score":0.0},{"id":"https://openalex.org/C149923435","wikidata":"https://www.wikidata.org/wiki/Q37732","display_name":"Demography","level":1,"score":0.0}],"mesh":[{"descriptor_ui":"D005828","descriptor_name":"Genetics, Population","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D005828","descriptor_name":"Genetics, Population","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D005828","descriptor_name":"Genetics, Population","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D006239","descriptor_name":"Haplotypes","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D006239","descriptor_name":"Haplotypes","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D006239","descriptor_name":"Haplotypes","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D012984","descriptor_name":"Software","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D012984","descriptor_name":"Software","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D012984","descriptor_name":"Software","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D019295","descriptor_name":"Computational Biology","qualifier_ui":"Q000379","qualifier_name":"methods","is_major_topic":false},{"descriptor_ui":"D019295","descriptor_name":"Computational Biology","qualifier_ui":"Q000379","qualifier_name":"methods","is_major_topic":false},{"descriptor_ui":"D019295","descriptor_name":"Computational Biology","qualifier_ui":"Q000379","qualifier_name":"methods","is_major_topic":false},{"descriptor_ui":"D030541","descriptor_name":"Databases, Genetic","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D030541","descriptor_name":"Databases, Genetic","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D030541","descriptor_name":"Databases, Genetic","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false}],"locations_count":3,"locations":[{"id":"doi:10.1093/bioinformatics/btp696","is_oa":true,"landing_page_url":"https://doi.org/10.1093/bioinformatics/btp696","pdf_url":"https://academic.oup.com/bioinformatics/article-pdf/26/3/419/48860629/bioinformatics_26_3_419.pdf","source":{"id":"https://openalex.org/S52395412","display_name":"Bioinformatics","issn_l":"1367-4803","issn":["1367-4803","1367-4811"],"is_oa":false,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310311648","host_organization_name":"Oxford University Press","host_organization_lineage":["https://openalex.org/P4310311648","https://openalex.org/P4310311647"],"host_organization_lineage_names":["Oxford University Press","University of Oxford"],"type":"journal"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Bioinformatics","raw_type":"journal-article"},{"id":"pmid:20080509","is_oa":false,"landing_page_url":"https://pubmed.ncbi.nlm.nih.gov/20080509","pdf_url":null,"source":{"id":"https://openalex.org/S4306525036","display_name":"PubMed","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I1299303238","host_organization_name":"National Institutes of Health","host_organization_lineage":["https://openalex.org/I1299303238"],"host_organization_lineage_names":[],"type":"repository"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Bioinformatics (Oxford, England)","raw_type":null},{"id":"pmh:oai:HAL:hal-01822130v1","is_oa":false,"landing_page_url":"https://hal.science/hal-01822130","pdf_url":null,"source":{"id":"https://openalex.org/S4406922466","display_name":"SPIRE - Sciences Po Institutional REpository","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":null,"host_organization_name":null,"host_organization_lineage":[],"host_organization_lineage_names":[],"type":"repository"},"license":null,"license_id":null,"version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":"Bioinformatics, 2010, 26 (3), pp.419 - 420. ⟨10.1093/bioinformatics/btp696⟩","raw_type":"Journal articles"}],"best_oa_location":{"id":"doi:10.1093/bioinformatics/btp696","is_oa":true,"landing_page_url":"https://doi.org/10.1093/bioinformatics/btp696","pdf_url":"https://academic.oup.com/bioinformatics/article-pdf/26/3/419/48860629/bioinformatics_26_3_419.pdf","source":{"id":"https://openalex.org/S52395412","display_name":"Bioinformatics","issn_l":"1367-4803","issn":["1367-4803","1367-4811"],"is_oa":false,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310311648","host_organization_name":"Oxford University Press","host_organization_lineage":["https://openalex.org/P4310311648","https://openalex.org/P4310311647"],"host_organization_lineage_names":["Oxford University Press","University of Oxford"],"type":"journal"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Bioinformatics","raw_type":"journal-article"},"sustainable_development_goals":[{"score":0.46000000834465027,"display_name":"Partnerships for the goals","id":"https://metadata.un.org/sdg/17"}],"awards":[],"funders":[{"id":"https://openalex.org/F4320320301","display_name":"European Science Foundation","ror":"https://ror.org/04esata81"},{"id":"https://openalex.org/F4320338080","display_name":"European Social Fund","ror":"https://ror.org/00k4n6c32"}],"has_content":{"pdf":true,"grobid_xml":true},"content_urls":{"pdf":"https://content.openalex.org/works/W2122606427.pdf","grobid_xml":"https://content.openalex.org/works/W2122606427.grobid-xml"},"referenced_works_count":11,"referenced_works":["https://openalex.org/W1602083219","https://openalex.org/W1718902928","https://openalex.org/W1901627773","https://openalex.org/W2070335941","https://openalex.org/W2146290595","https://openalex.org/W2151409320","https://openalex.org/W2207526553","https://openalex.org/W2224154098","https://openalex.org/W2582743722","https://openalex.org/W2616769059","https://openalex.org/W4205374493"],"related_works":["https://openalex.org/W4389426664","https://openalex.org/W2566205467","https://openalex.org/W3012616639","https://openalex.org/W3126000805","https://openalex.org/W3198565742","https://openalex.org/W2010064959","https://openalex.org/W2119742499","https://openalex.org/W1985266044","https://openalex.org/W2149263892","https://openalex.org/W4220940831"],"abstract_inverted_index":{"pegas":[0],"is":[1],"distributed":[2],"through":[3],"the":[4],"Comprehensive":[5],"R":[6],"Archive":[7],"Network":[8],"(CRAN):":[9],"http://cran.r-project.org/web/packages/pegas/index.html.":[10],"Further":[11],"information":[12],"may":[13],"be":[14],"found":[15],"at:":[16],"http://ape.mpl.ird.fr/pegas/.":[17]},"counts_by_year":[{"year":2026,"cited_by_count":101},{"year":2025,"cited_by_count":291},{"year":2024,"cited_by_count":324},{"year":2023,"cited_by_count":270},{"year":2022,"cited_by_count":252},{"year":2021,"cited_by_count":321},{"year":2020,"cited_by_count":283},{"year":2019,"cited_by_count":203},{"year":2018,"cited_by_count":158},{"year":2017,"cited_by_count":126},{"year":2016,"cited_by_count":108},{"year":2015,"cited_by_count":67},{"year":2014,"cited_by_count":50},{"year":2013,"cited_by_count":36},{"year":2012,"cited_by_count":29}],"updated_date":"2026-04-24T08:23:43.765630","created_date":"2025-10-10T00:00:00"}