{"id":"https://openalex.org/W2107084703","doi":"https://doi.org/10.1093/bioinformatics/btp674","title":"PCIT: an R package for weighted gene co-expression networks based on partial correlation and information theory approaches","display_name":"PCIT: an R package for weighted gene co-expression networks based on partial correlation and information theory approaches","publication_year":2009,"publication_date":"2009-12-09","ids":{"openalex":"https://openalex.org/W2107084703","doi":"https://doi.org/10.1093/bioinformatics/btp674","mag":"2107084703","pmid":"https://pubmed.ncbi.nlm.nih.gov/20007253"},"language":"en","primary_location":{"id":"doi:10.1093/bioinformatics/btp674","is_oa":false,"landing_page_url":"https://doi.org/10.1093/bioinformatics/btp674","pdf_url":null,"source":{"id":"https://openalex.org/S52395412","display_name":"Bioinformatics","issn_l":"1367-4803","issn":["1367-4803","1367-4811"],"is_oa":false,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310311648","host_organization_name":"Oxford University Press","host_organization_lineage":["https://openalex.org/P4310311648","https://openalex.org/P4310311647"],"host_organization_lineage_names":["Oxford University Press","University of Oxford"],"type":"journal"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Bioinformatics","raw_type":"journal-article"},"type":"article","indexed_in":["crossref","doaj","pubmed"],"open_access":{"is_oa":false,"oa_status":"closed","oa_url":null,"any_repository_has_fulltext":false},"authorships":[{"author_position":"first","author":{"id":"https://openalex.org/A5088788062","display_name":"Nathan S. Watson\u2010Haigh","orcid":"https://orcid.org/0000-0002-7935-6151"},"institutions":[{"id":"https://openalex.org/I1292875679","display_name":"Commonwealth Scientific and Industrial Research Organisation","ror":"https://ror.org/03qn8fb07","country_code":"AU","type":"funder","lineage":["https://openalex.org/I1292875679","https://openalex.org/I2801453606","https://openalex.org/I4387156119"]}],"countries":["AU"],"is_corresponding":true,"raw_author_name":"Nathan S. Watson-Haigh","raw_affiliation_strings":["1 CSIRO Livestock Industries, Queensland Bioscience Precinct, St Lucia, QLD 4067 and 2 CSIRO Livestock Industries, JM Rendel Laboratories, Ibis Avenue, Rockhampton, QLD 4701, Australia"],"affiliations":[{"raw_affiliation_string":"1 CSIRO Livestock Industries, Queensland Bioscience Precinct, St Lucia, QLD 4067 and 2 CSIRO Livestock Industries, JM Rendel Laboratories, Ibis Avenue, Rockhampton, QLD 4701, Australia","institution_ids":["https://openalex.org/I1292875679"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5036656399","display_name":"Haja N. Kadarmideen","orcid":"https://orcid.org/0000-0001-6294-382X"},"institutions":[{"id":"https://openalex.org/I1292875679","display_name":"Commonwealth Scientific and Industrial Research Organisation","ror":"https://ror.org/03qn8fb07","country_code":"AU","type":"funder","lineage":["https://openalex.org/I1292875679","https://openalex.org/I2801453606","https://openalex.org/I4387156119"]}],"countries":["AU"],"is_corresponding":false,"raw_author_name":"Haja N. Kadarmideen","raw_affiliation_strings":["1 CSIRO Livestock Industries, Queensland Bioscience Precinct, St Lucia, QLD 4067 and 2 CSIRO Livestock Industries, JM Rendel Laboratories, Ibis Avenue, Rockhampton, QLD 4701, Australia"],"affiliations":[{"raw_affiliation_string":"1 CSIRO Livestock Industries, Queensland Bioscience Precinct, St Lucia, QLD 4067 and 2 CSIRO Livestock Industries, JM Rendel Laboratories, Ibis Avenue, Rockhampton, QLD 4701, Australia","institution_ids":["https://openalex.org/I1292875679"]}]},{"author_position":"last","author":{"id":"https://openalex.org/A5074319488","display_name":"Ant\u00f4nio Reverter","orcid":"https://orcid.org/0000-0002-4681-9404"},"institutions":[{"id":"https://openalex.org/I1292875679","display_name":"Commonwealth Scientific and Industrial Research Organisation","ror":"https://ror.org/03qn8fb07","country_code":"AU","type":"funder","lineage":["https://openalex.org/I1292875679","https://openalex.org/I2801453606","https://openalex.org/I4387156119"]}],"countries":["AU"],"is_corresponding":false,"raw_author_name":"Antonio Reverter","raw_affiliation_strings":["1 CSIRO Livestock Industries, Queensland Bioscience Precinct, St Lucia, QLD 4067 and 2 CSIRO Livestock Industries, JM Rendel Laboratories, Ibis Avenue, Rockhampton, QLD 4701, Australia"],"affiliations":[{"raw_affiliation_string":"1 CSIRO Livestock Industries, Queensland Bioscience Precinct, St Lucia, QLD 4067 and 2 CSIRO Livestock Industries, JM Rendel Laboratories, Ibis Avenue, Rockhampton, QLD 4701, Australia","institution_ids":["https://openalex.org/I1292875679"]}]}],"institutions":[],"countries_distinct_count":1,"institutions_distinct_count":3,"corresponding_author_ids":["https://openalex.org/A5088788062"],"corresponding_institution_ids":["https://openalex.org/I1292875679"],"apc_list":{"value":3618,"currency":"USD","value_usd":3618},"apc_paid":null,"fwci":1.3478,"has_fulltext":false,"cited_by_count":94,"citation_normalized_percentile":{"value":0.80122525,"is_in_top_1_percent":false,"is_in_top_10_percent":false},"cited_by_percentile_year":{"min":94,"max":99},"biblio":{"volume":"26","issue":"3","first_page":"411","last_page":"413"},"is_retracted":false,"is_paratext":false,"is_xpac":false,"primary_topic":{"id":"https://openalex.org/T10885","display_name":"Gene expression and cancer classification","score":0.9993000030517578,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},"topics":[{"id":"https://openalex.org/T10885","display_name":"Gene expression and cancer classification","score":0.9993000030517578,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},{"id":"https://openalex.org/T10887","display_name":"Bioinformatics and Genomic Networks","score":0.9988999962806702,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},{"id":"https://openalex.org/T10621","display_name":"Gene Regulatory Network Analysis","score":0.9936000108718872,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}}],"keywords":[{"id":"https://openalex.org/keywords/scripting-language","display_name":"Scripting language","score":0.8429988622665405},{"id":"https://openalex.org/keywords/r-package","display_name":"R package","score":0.793941855430603},{"id":"https://openalex.org/keywords/computer-science","display_name":"Computer science","score":0.6828990578651428},{"id":"https://openalex.org/keywords/source-code","display_name":"Source code","score":0.6196538209915161},{"id":"https://openalex.org/keywords/code","display_name":"Code (set theory)","score":0.5149120092391968},{"id":"https://openalex.org/keywords/correlation","display_name":"Correlation","score":0.490427702665329},{"id":"https://openalex.org/keywords/expression","display_name":"Expression (computer science)","score":0.47231101989746094},{"id":"https://openalex.org/keywords/download","display_name":"Download","score":0.42245903611183167},{"id":"https://openalex.org/keywords/operating-system","display_name":"Operating system","score":0.4013880491256714},{"id":"https://openalex.org/keywords/data-mining","display_name":"Data mining","score":0.3484264612197876},{"id":"https://openalex.org/keywords/programming-language","display_name":"Programming language","score":0.34253761172294617},{"id":"https://openalex.org/keywords/mathematics","display_name":"Mathematics","score":0.12992891669273376},{"id":"https://openalex.org/keywords/set","display_name":"Set (abstract data type)","score":0.07806092500686646}],"concepts":[{"id":"https://openalex.org/C61423126","wikidata":"https://www.wikidata.org/wiki/Q187432","display_name":"Scripting language","level":2,"score":0.8429988622665405},{"id":"https://openalex.org/C2984074130","wikidata":"https://www.wikidata.org/wiki/Q73539779","display_name":"R package","level":2,"score":0.793941855430603},{"id":"https://openalex.org/C41008148","wikidata":"https://www.wikidata.org/wiki/Q21198","display_name":"Computer science","level":0,"score":0.6828990578651428},{"id":"https://openalex.org/C43126263","wikidata":"https://www.wikidata.org/wiki/Q128751","display_name":"Source code","level":2,"score":0.6196538209915161},{"id":"https://openalex.org/C2776760102","wikidata":"https://www.wikidata.org/wiki/Q5139990","display_name":"Code (set theory)","level":3,"score":0.5149120092391968},{"id":"https://openalex.org/C117220453","wikidata":"https://www.wikidata.org/wiki/Q5172842","display_name":"Correlation","level":2,"score":0.490427702665329},{"id":"https://openalex.org/C90559484","wikidata":"https://www.wikidata.org/wiki/Q778379","display_name":"Expression (computer science)","level":2,"score":0.47231101989746094},{"id":"https://openalex.org/C2780154274","wikidata":"https://www.wikidata.org/wiki/Q7126717","display_name":"Download","level":2,"score":0.42245903611183167},{"id":"https://openalex.org/C111919701","wikidata":"https://www.wikidata.org/wiki/Q9135","display_name":"Operating system","level":1,"score":0.4013880491256714},{"id":"https://openalex.org/C124101348","wikidata":"https://www.wikidata.org/wiki/Q172491","display_name":"Data mining","level":1,"score":0.3484264612197876},{"id":"https://openalex.org/C199360897","wikidata":"https://www.wikidata.org/wiki/Q9143","display_name":"Programming language","level":1,"score":0.34253761172294617},{"id":"https://openalex.org/C33923547","wikidata":"https://www.wikidata.org/wiki/Q395","display_name":"Mathematics","level":0,"score":0.12992891669273376},{"id":"https://openalex.org/C177264268","wikidata":"https://www.wikidata.org/wiki/Q1514741","display_name":"Set (abstract data type)","level":2,"score":0.07806092500686646},{"id":"https://openalex.org/C2524010","wikidata":"https://www.wikidata.org/wiki/Q8087","display_name":"Geometry","level":1,"score":0.0}],"mesh":[{"descriptor_ui":"D000465","descriptor_name":"Algorithms","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D000465","descriptor_name":"Algorithms","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D000465","descriptor_name":"Algorithms","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D012984","descriptor_name":"Software","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D012984","descriptor_name":"Software","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D012984","descriptor_name":"Software","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D019295","descriptor_name":"Computational Biology","qualifier_ui":"Q000379","qualifier_name":"methods","is_major_topic":false},{"descriptor_ui":"D019295","descriptor_name":"Computational Biology","qualifier_ui":"Q000379","qualifier_name":"methods","is_major_topic":false},{"descriptor_ui":"D019295","descriptor_name":"Computational Biology","qualifier_ui":"Q000379","qualifier_name":"methods","is_major_topic":false},{"descriptor_ui":"D020869","descriptor_name":"Gene Expression Profiling","qualifier_ui":"Q000379","qualifier_name":"methods","is_major_topic":false},{"descriptor_ui":"D020869","descriptor_name":"Gene Expression Profiling","qualifier_ui":"Q000379","qualifier_name":"methods","is_major_topic":false},{"descriptor_ui":"D020869","descriptor_name":"Gene Expression Profiling","qualifier_ui":"Q000379","qualifier_name":"methods","is_major_topic":false},{"descriptor_ui":"D030541","descriptor_name":"Databases, Genetic","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D030541","descriptor_name":"Databases, Genetic","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D030541","descriptor_name":"Databases, Genetic","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D053263","descriptor_name":"Gene Regulatory Networks","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D053263","descriptor_name":"Gene Regulatory Networks","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D053263","descriptor_name":"Gene Regulatory Networks","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true}],"locations_count":5,"locations":[{"id":"doi:10.1093/bioinformatics/btp674","is_oa":false,"landing_page_url":"https://doi.org/10.1093/bioinformatics/btp674","pdf_url":null,"source":{"id":"https://openalex.org/S52395412","display_name":"Bioinformatics","issn_l":"1367-4803","issn":["1367-4803","1367-4811"],"is_oa":false,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310311648","host_organization_name":"Oxford University Press","host_organization_lineage":["https://openalex.org/P4310311648","https://openalex.org/P4310311647"],"host_organization_lineage_names":["Oxford University Press","University of Oxford"],"type":"journal"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Bioinformatics","raw_type":"journal-article"},{"id":"pmid:20007253","is_oa":false,"landing_page_url":"https://pubmed.ncbi.nlm.nih.gov/20007253","pdf_url":null,"source":{"id":"https://openalex.org/S4306525036","display_name":"PubMed","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I1299303238","host_organization_name":"National Institutes of Health","host_organization_lineage":["https://openalex.org/I1299303238"],"host_organization_lineage_names":[],"type":"repository"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Bioinformatics (Oxford, England)","raw_type":null},{"id":"pmh:oai:digital.library.adelaide.edu.au:2440/86580","is_oa":false,"landing_page_url":"http://hdl.handle.net/2440/86580","pdf_url":null,"source":{"id":"https://openalex.org/S4306401835","display_name":"Adelaide Research & Scholarship (AR&S) (University of Adelaide)","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I5681781","host_organization_name":"The University of Adelaide","host_organization_lineage":["https://openalex.org/I5681781"],"host_organization_lineage_names":[],"type":"repository"},"license":null,"license_id":null,"version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":"http://dx.doi.org/10.1093/bioinformatics/btp674","raw_type":"Journal article"},{"id":"pmh:oai:espace.library.uq.edu.au:UQ:8c87444","is_oa":false,"landing_page_url":null,"pdf_url":null,"source":{"id":"https://openalex.org/S4306402388","display_name":"Queensland's institutional digital repository (The University of Queensland)","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I165143802","host_organization_name":"The University of Queensland","host_organization_lineage":["https://openalex.org/I165143802"],"host_organization_lineage_names":[],"type":"repository"},"license":null,"license_id":null,"version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":"","raw_type":"Journal Article"},{"id":"pmh:oai:pure.atira.dk:publications/4052b4e9-cf4f-4a07-a228-7fa65e5d782e","is_oa":false,"landing_page_url":"https://pure.au.dk/portal/en/publications/4052b4e9-cf4f-4a07-a228-7fa65e5d782e","pdf_url":null,"source":null,"license":null,"license_id":null,"version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":"Watson-Haigh , N S , Kadarmideen , H N &amp; Reverter , A 2009 , ' PCIT : An R package for weighted gene co-expression networks based on partial correlation and information theory approaches ' , Bioinformatics , vol. 26 , no. 3 , pp. 411-413 . https://doi.org/10.1093/bioinformatics/btp674","raw_type":"article"}],"best_oa_location":null,"sustainable_development_goals":[],"awards":[],"funders":[{"id":"https://openalex.org/F4320320386","display_name":"Commonwealth Scientific and Industrial Research Organisation","ror":"https://ror.org/03qn8fb07"}],"has_content":{"grobid_xml":false,"pdf":false},"content_urls":null,"referenced_works_count":6,"referenced_works":["https://openalex.org/W1992916600","https://openalex.org/W2099380913","https://openalex.org/W2108331169","https://openalex.org/W2134586291","https://openalex.org/W2160697532","https://openalex.org/W2161409973"],"related_works":["https://openalex.org/W2086733238","https://openalex.org/W4235530921","https://openalex.org/W3017187763","https://openalex.org/W270927586","https://openalex.org/W2107084703","https://openalex.org/W283806354","https://openalex.org/W212372412","https://openalex.org/W4313142237","https://openalex.org/W4312816704","https://openalex.org/W2510251154"],"abstract_inverted_index":{"Source":[0],"code":[1],"and":[2,17,21],"binaries":[3],"freely":[4],"available":[5],"(under":[6],"GPL-3)":[7],"for":[8],"download":[9],"via":[10],"CRAN":[11],"at":[12],"http://cran.r-project.org/package=PCIT,":[13],"implemented":[14],"in":[15],"R":[16],"supported":[18],"on":[19],"Linux":[20],"MS":[22],"Windows.":[23]},"counts_by_year":[{"year":2026,"cited_by_count":1},{"year":2025,"cited_by_count":7},{"year":2024,"cited_by_count":4},{"year":2023,"cited_by_count":3},{"year":2022,"cited_by_count":6},{"year":2021,"cited_by_count":2},{"year":2020,"cited_by_count":7},{"year":2019,"cited_by_count":8},{"year":2018,"cited_by_count":8},{"year":2017,"cited_by_count":11},{"year":2016,"cited_by_count":11},{"year":2015,"cited_by_count":6},{"year":2014,"cited_by_count":6},{"year":2013,"cited_by_count":4},{"year":2012,"cited_by_count":4}],"updated_date":"2026-04-04T16:13:02.066488","created_date":"2025-10-10T00:00:00"}
