{"id":"https://openalex.org/W2114482012","doi":"https://doi.org/10.1093/bioinformatics/btp648","title":"Over-optimism in bioinformatics research","display_name":"Over-optimism in bioinformatics research","publication_year":2009,"publication_date":"2009-11-26","ids":{"openalex":"https://openalex.org/W2114482012","doi":"https://doi.org/10.1093/bioinformatics/btp648","mag":"2114482012","pmid":"https://pubmed.ncbi.nlm.nih.gov/19942585"},"language":"en","primary_location":{"id":"doi:10.1093/bioinformatics/btp648","is_oa":true,"landing_page_url":"https://doi.org/10.1093/bioinformatics/btp648","pdf_url":"https://academic.oup.com/bioinformatics/article-pdf/26/3/437/48860394/bioinformatics_26_3_437.pdf","source":{"id":"https://openalex.org/S52395412","display_name":"Bioinformatics","issn_l":"1367-4803","issn":["1367-4803","1367-4811"],"is_oa":false,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310311648","host_organization_name":"Oxford University Press","host_organization_lineage":["https://openalex.org/P4310311648","https://openalex.org/P4310311647"],"host_organization_lineage_names":["Oxford University Press","University of Oxford"],"type":"journal"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Bioinformatics","raw_type":"journal-article"},"type":"letter","indexed_in":["crossref","doaj","pubmed"],"open_access":{"is_oa":true,"oa_status":"bronze","oa_url":"https://academic.oup.com/bioinformatics/article-pdf/26/3/437/48860394/bioinformatics_26_3_437.pdf","any_repository_has_fulltext":false},"authorships":[{"author_position":"first","author":{"id":"https://openalex.org/A5015152016","display_name":"Anne\u2010Laure Boulesteix","orcid":"https://orcid.org/0000-0002-2729-0947"},"institutions":[{"id":"https://openalex.org/I4210099379","display_name":"Zimmer Biomet (Germany)","ror":"https://ror.org/016731f38","country_code":"DE","type":"company","lineage":["https://openalex.org/I4210099379","https://openalex.org/I4210115238"]}],"countries":["DE"],"is_corresponding":true,"raw_author_name":"Anne-Laure Boulesteix","raw_affiliation_strings":["Department of Medical Informatics, Biometry and Epidemiology, University of Munich, Marchioninistr. 15, 81377 Munich, Germany"],"affiliations":[{"raw_affiliation_string":"Department of Medical Informatics, Biometry and Epidemiology, University of Munich, Marchioninistr. 15, 81377 Munich, Germany","institution_ids":["https://openalex.org/I4210099379"]}]}],"institutions":[],"countries_distinct_count":1,"institutions_distinct_count":1,"corresponding_author_ids":["https://openalex.org/A5015152016"],"corresponding_institution_ids":["https://openalex.org/I4210099379"],"apc_list":{"value":3618,"currency":"USD","value_usd":3618},"apc_paid":null,"fwci":7.80671802,"has_fulltext":false,"cited_by_count":83,"citation_normalized_percentile":{"value":0.98022336,"is_in_top_1_percent":false,"is_in_top_10_percent":true},"cited_by_percentile_year":{"min":89,"max":99},"biblio":{"volume":"26","issue":"3","first_page":"437","last_page":"439"},"is_retracted":false,"is_paratext":false,"is_xpac":false,"primary_topic":{"id":"https://openalex.org/T11235","display_name":"Statistical Methods in Clinical Trials","score":0.9983999729156494,"subfield":{"id":"https://openalex.org/subfields/2613","display_name":"Statistics and Probability"},"field":{"id":"https://openalex.org/fields/26","display_name":"Mathematics"},"domain":{"id":"https://openalex.org/domains/3","display_name":"Physical Sciences"}},"topics":[{"id":"https://openalex.org/T11235","display_name":"Statistical Methods in Clinical Trials","score":0.9983999729156494,"subfield":{"id":"https://openalex.org/subfields/2613","display_name":"Statistics and Probability"},"field":{"id":"https://openalex.org/fields/26","display_name":"Mathematics"},"domain":{"id":"https://openalex.org/domains/3","display_name":"Physical Sciences"}},{"id":"https://openalex.org/T10206","display_name":"Meta-analysis and systematic reviews","score":0.9936000108718872,"subfield":{"id":"https://openalex.org/subfields/1804","display_name":"Statistics, Probability and Uncertainty"},"field":{"id":"https://openalex.org/fields/18","display_name":"Decision Sciences"},"domain":{"id":"https://openalex.org/domains/2","display_name":"Social Sciences"}},{"id":"https://openalex.org/T10845","display_name":"Advanced Causal Inference Techniques","score":0.9686999917030334,"subfield":{"id":"https://openalex.org/subfields/2613","display_name":"Statistics and Probability"},"field":{"id":"https://openalex.org/fields/26","display_name":"Mathematics"},"domain":{"id":"https://openalex.org/domains/3","display_name":"Physical Sciences"}}],"keywords":[{"id":"https://openalex.org/keywords/false-positive-paradox","display_name":"False positive paradox","score":0.6796296834945679},{"id":"https://openalex.org/keywords/optimism","display_name":"Optimism","score":0.6109264492988586},{"id":"https://openalex.org/keywords/context","display_name":"Context (archaeology)","score":0.602286159992218},{"id":"https://openalex.org/keywords/computer-science","display_name":"Computer science","score":0.5179711580276489},{"id":"https://openalex.org/keywords/false-positives-and-false-negatives","display_name":"False positives and false negatives","score":0.45818912982940674},{"id":"https://openalex.org/keywords/publication","display_name":"Publication","score":0.44816845655441284},{"id":"https://openalex.org/keywords/pessimism","display_name":"Pessimism","score":0.41712215542793274},{"id":"https://openalex.org/keywords/data-science","display_name":"Data science","score":0.36224162578582764},{"id":"https://openalex.org/keywords/psychology","display_name":"Psychology","score":0.3465201258659363},{"id":"https://openalex.org/keywords/artificial-intelligence","display_name":"Artificial intelligence","score":0.22815296053886414},{"id":"https://openalex.org/keywords/social-psychology","display_name":"Social psychology","score":0.21106499433517456},{"id":"https://openalex.org/keywords/epistemology","display_name":"Epistemology","score":0.15128487348556519},{"id":"https://openalex.org/keywords/biology","display_name":"Biology","score":0.11594456434249878}],"concepts":[{"id":"https://openalex.org/C64869954","wikidata":"https://www.wikidata.org/wiki/Q1859747","display_name":"False positive paradox","level":2,"score":0.6796296834945679},{"id":"https://openalex.org/C204017024","wikidata":"https://www.wikidata.org/wiki/Q485446","display_name":"Optimism","level":2,"score":0.6109264492988586},{"id":"https://openalex.org/C2779343474","wikidata":"https://www.wikidata.org/wiki/Q3109175","display_name":"Context (archaeology)","level":2,"score":0.602286159992218},{"id":"https://openalex.org/C41008148","wikidata":"https://www.wikidata.org/wiki/Q21198","display_name":"Computer science","level":0,"score":0.5179711580276489},{"id":"https://openalex.org/C112789634","wikidata":"https://www.wikidata.org/wiki/Q18207010","display_name":"False positives and false negatives","level":3,"score":0.45818912982940674},{"id":"https://openalex.org/C41458344","wikidata":"https://www.wikidata.org/wiki/Q732577","display_name":"Publication","level":2,"score":0.44816845655441284},{"id":"https://openalex.org/C9992130","wikidata":"https://www.wikidata.org/wiki/Q484954","display_name":"Pessimism","level":2,"score":0.41712215542793274},{"id":"https://openalex.org/C2522767166","wikidata":"https://www.wikidata.org/wiki/Q2374463","display_name":"Data science","level":1,"score":0.36224162578582764},{"id":"https://openalex.org/C15744967","wikidata":"https://www.wikidata.org/wiki/Q9418","display_name":"Psychology","level":0,"score":0.3465201258659363},{"id":"https://openalex.org/C154945302","wikidata":"https://www.wikidata.org/wiki/Q11660","display_name":"Artificial intelligence","level":1,"score":0.22815296053886414},{"id":"https://openalex.org/C77805123","wikidata":"https://www.wikidata.org/wiki/Q161272","display_name":"Social psychology","level":1,"score":0.21106499433517456},{"id":"https://openalex.org/C111472728","wikidata":"https://www.wikidata.org/wiki/Q9471","display_name":"Epistemology","level":1,"score":0.15128487348556519},{"id":"https://openalex.org/C86803240","wikidata":"https://www.wikidata.org/wiki/Q420","display_name":"Biology","level":0,"score":0.11594456434249878},{"id":"https://openalex.org/C151730666","wikidata":"https://www.wikidata.org/wiki/Q7205","display_name":"Paleontology","level":1,"score":0.0},{"id":"https://openalex.org/C112698675","wikidata":"https://www.wikidata.org/wiki/Q37038","display_name":"Advertising","level":1,"score":0.0},{"id":"https://openalex.org/C138885662","wikidata":"https://www.wikidata.org/wiki/Q5891","display_name":"Philosophy","level":0,"score":0.0},{"id":"https://openalex.org/C144133560","wikidata":"https://www.wikidata.org/wiki/Q4830453","display_name":"Business","level":0,"score":0.0}],"mesh":[{"descriptor_ui":"D019295","descriptor_name":"Computational Biology","qualifier_ui":"Q000379","qualifier_name":"methods","is_major_topic":false},{"descriptor_ui":"D010506","descriptor_name":"Periodicals as Topic","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D012106","descriptor_name":"Research","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D019295","descriptor_name":"Computational Biology","qualifier_ui":"Q000379","qualifier_name":"methods","is_major_topic":false},{"descriptor_ui":"D010506","descriptor_name":"Periodicals as Topic","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D012106","descriptor_name":"Research","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D019295","descriptor_name":"Computational Biology","qualifier_ui":"Q000379","qualifier_name":"methods","is_major_topic":false},{"descriptor_ui":"D010506","descriptor_name":"Periodicals as Topic","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D012106","descriptor_name":"Research","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false}],"locations_count":2,"locations":[{"id":"doi:10.1093/bioinformatics/btp648","is_oa":true,"landing_page_url":"https://doi.org/10.1093/bioinformatics/btp648","pdf_url":"https://academic.oup.com/bioinformatics/article-pdf/26/3/437/48860394/bioinformatics_26_3_437.pdf","source":{"id":"https://openalex.org/S52395412","display_name":"Bioinformatics","issn_l":"1367-4803","issn":["1367-4803","1367-4811"],"is_oa":false,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310311648","host_organization_name":"Oxford University Press","host_organization_lineage":["https://openalex.org/P4310311648","https://openalex.org/P4310311647"],"host_organization_lineage_names":["Oxford University Press","University of Oxford"],"type":"journal"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Bioinformatics","raw_type":"journal-article"},{"id":"pmid:19942585","is_oa":false,"landing_page_url":"https://pubmed.ncbi.nlm.nih.gov/19942585","pdf_url":null,"source":{"id":"https://openalex.org/S4306525036","display_name":"PubMed","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I1299303238","host_organization_name":"National Institutes of Health","host_organization_lineage":["https://openalex.org/I1299303238"],"host_organization_lineage_names":[],"type":"repository"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Bioinformatics (Oxford, England)","raw_type":null}],"best_oa_location":{"id":"doi:10.1093/bioinformatics/btp648","is_oa":true,"landing_page_url":"https://doi.org/10.1093/bioinformatics/btp648","pdf_url":"https://academic.oup.com/bioinformatics/article-pdf/26/3/437/48860394/bioinformatics_26_3_437.pdf","source":{"id":"https://openalex.org/S52395412","display_name":"Bioinformatics","issn_l":"1367-4803","issn":["1367-4803","1367-4811"],"is_oa":false,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310311648","host_organization_name":"Oxford University Press","host_organization_lineage":["https://openalex.org/P4310311648","https://openalex.org/P4310311647"],"host_organization_lineage_names":["Oxford University Press","University of Oxford"],"type":"journal"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Bioinformatics","raw_type":"journal-article"},"sustainable_development_goals":[{"score":0.8100000023841858,"display_name":"Life below water","id":"https://metadata.un.org/sdg/14"}],"awards":[],"funders":[],"has_content":{"pdf":true,"grobid_xml":true},"content_urls":{"pdf":"https://content.openalex.org/works/W2114482012.pdf","grobid_xml":"https://content.openalex.org/works/W2114482012.grobid-xml"},"referenced_works_count":12,"referenced_works":["https://openalex.org/W1970223153","https://openalex.org/W2036089620","https://openalex.org/W2041063423","https://openalex.org/W2062908954","https://openalex.org/W2104092906","https://openalex.org/W2115471640","https://openalex.org/W2143964357","https://openalex.org/W2144981148","https://openalex.org/W2243629635","https://openalex.org/W4237895524","https://openalex.org/W6666276267","https://openalex.org/W6675809350"],"related_works":["https://openalex.org/W2155223580","https://openalex.org/W2129200904","https://openalex.org/W2006807542","https://openalex.org/W72025981","https://openalex.org/W2374935031","https://openalex.org/W1835126259","https://openalex.org/W3094705963","https://openalex.org/W2361737659","https://openalex.org/W1979459745","https://openalex.org/W4247796423"],"abstract_inverted_index":{"The":[0,79],"problem":[1,83],"of":[2,21,49,54,159,190],"\u201dfalse":[3],"research":[4,8],"findings\u201d":[5],"in":[6,13,30,45,65,150,183,193],"medical":[7,185],"has":[9],"focused":[10],"much":[11,95],"attention":[12],"the":[14,22,31,47,87,137,184,187],"last":[15],"few":[16],"years":[17,108],"(Ioannidis,":[18,77],"2005).":[19,78],"One":[20],"main":[23],"problems,":[24],"termed":[25],"as":[26,104],"\u201dfishing":[27,80],"for":[28,81,169],"significance\u201d":[29,82],"present":[32],"letter,":[33],"is":[34,84,174],"that":[35,43],"researchers":[36],"often":[37],"(consciously":[38],"or":[39],"subconsciously)":[40],"report":[41],"results":[42,58,92,118,142,163],"are":[44,59,119],"fact":[46],"product":[48],"an":[50,66],"intensive":[51],"optimization,":[52],"i.e.":[53,166],"multiple":[55,122],"comparisons.":[56],"Such":[57],"typically":[60],"unlikely":[61],"to":[62,74,98,130,139,146,167],"be":[63,75],"reproduced":[64],"independent":[67],"study":[68,152],"and":[69,124,179,195],"have":[70,93,127],"a":[71,94,113],"high":[72],"probability":[73],"false":[76,116,125],"enhanced":[85],"by":[86,153,164,175],"so-called":[88],"\u201dpublication":[89],"bias\u201d:":[90],"positive":[91,117,149,162],"higher":[96,128],"chance":[97,129],"get":[99,131],"published":[100,132],"than":[101,133,182],"negative":[102,141],"results,":[103],"already":[105],"acknowledged":[106,178],"fifty":[107],"ago":[109],"(Sterling,":[110],"1959).":[111],"In":[112],"word,":[114],"many":[115],"produced":[120],"through":[121],"comparisons,":[123],"positives":[126],"true":[134],"negatives.":[135],"Moreover,":[136],"difficulty":[138],"publish":[140],"obviously":[143],"encourages":[144],"authors":[145],"find":[147],"something":[148],"their":[151],"performing":[154],"numerous":[155],"analyses":[156],"until":[157],"one":[158],"them":[160],"yields":[161],"chance,":[165],"fish":[168],"significance.":[170],"Although":[171],"this":[172],"issue":[173],"far":[176],"less":[177],"publicly":[180],"admitted":[181],"context,":[186],"same":[188],"types":[189],"problems":[191],"occur":[192],"biostatistics":[194],"bioinformatics":[196],"research.":[197]},"counts_by_year":[{"year":2025,"cited_by_count":3},{"year":2023,"cited_by_count":2},{"year":2022,"cited_by_count":8},{"year":2021,"cited_by_count":1},{"year":2019,"cited_by_count":8},{"year":2018,"cited_by_count":1},{"year":2017,"cited_by_count":3},{"year":2016,"cited_by_count":7},{"year":2015,"cited_by_count":7},{"year":2014,"cited_by_count":6},{"year":2013,"cited_by_count":7},{"year":2012,"cited_by_count":8}],"updated_date":"2025-11-06T03:46:38.306776","created_date":"2025-10-10T00:00:00"}
