{"id":"https://openalex.org/W2109028614","doi":"https://doi.org/10.1093/bioinformatics/btp600","title":"Ancestors 1.0: a web server for ancestral sequence reconstruction","display_name":"Ancestors 1.0: a web server for ancestral sequence reconstruction","publication_year":2009,"publication_date":"2009-10-22","ids":{"openalex":"https://openalex.org/W2109028614","doi":"https://doi.org/10.1093/bioinformatics/btp600","mag":"2109028614","pmid":"https://pubmed.ncbi.nlm.nih.gov/19850756"},"language":"en","primary_location":{"id":"doi:10.1093/bioinformatics/btp600","is_oa":true,"landing_page_url":"https://doi.org/10.1093/bioinformatics/btp600","pdf_url":"https://academic.oup.com/bioinformatics/article-pdf/26/1/130/48852138/bioinformatics_26_1_130.pdf","source":{"id":"https://openalex.org/S52395412","display_name":"Bioinformatics","issn_l":"1367-4803","issn":["1367-4803","1367-4811"],"is_oa":false,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310311648","host_organization_name":"Oxford University Press","host_organization_lineage":["https://openalex.org/P4310311648","https://openalex.org/P4310311647"],"host_organization_lineage_names":["Oxford University Press","University of Oxford"],"type":"journal"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Bioinformatics","raw_type":"journal-article"},"type":"article","indexed_in":["crossref","doaj","pubmed"],"open_access":{"is_oa":true,"oa_status":"bronze","oa_url":"https://academic.oup.com/bioinformatics/article-pdf/26/1/130/48852138/bioinformatics_26_1_130.pdf","any_repository_has_fulltext":false},"authorships":[{"author_position":"first","author":{"id":"https://openalex.org/A5061553529","display_name":"Abdoulaye Banir\u00e9 Diallo","orcid":"https://orcid.org/0000-0002-1168-9371"},"institutions":[{"id":"https://openalex.org/I5023651","display_name":"McGill University","ror":"https://ror.org/01pxwe438","country_code":"CA","type":"education","lineage":["https://openalex.org/I5023651"]},{"id":"https://openalex.org/I159129438","display_name":"Universit\u00e9 du Qu\u00e9bec \u00e0 Montr\u00e9al","ror":"https://ror.org/002rjbv21","country_code":"CA","type":"education","lineage":["https://openalex.org/I159129438","https://openalex.org/I49663120"]}],"countries":["CA"],"is_corresponding":true,"raw_author_name":"Abdoulaye Banire Diallo","raw_affiliation_strings":["1 Department of Computer Science, Universit\u00e9 du Qu\u00e9bec \u00e0 Montr\u00e9al, PO. Box 8888 Downtown Station, Montreal Qc, H3C 3P8 and 2 School of Computer Science, McGill University, 3630 University street #3107, Montreal, Qc, H3A 2B2, Canada"],"affiliations":[{"raw_affiliation_string":"1 Department of Computer Science, Universit\u00e9 du Qu\u00e9bec \u00e0 Montr\u00e9al, PO. Box 8888 Downtown Station, Montreal Qc, H3C 3P8 and 2 School of Computer Science, McGill University, 3630 University street #3107, Montreal, Qc, H3A 2B2, Canada","institution_ids":["https://openalex.org/I159129438","https://openalex.org/I5023651"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5004592090","display_name":"Vladimir Makarenkov","orcid":"https://orcid.org/0000-0003-3753-5925"},"institutions":[{"id":"https://openalex.org/I5023651","display_name":"McGill University","ror":"https://ror.org/01pxwe438","country_code":"CA","type":"education","lineage":["https://openalex.org/I5023651"]},{"id":"https://openalex.org/I159129438","display_name":"Universit\u00e9 du Qu\u00e9bec \u00e0 Montr\u00e9al","ror":"https://ror.org/002rjbv21","country_code":"CA","type":"education","lineage":["https://openalex.org/I159129438","https://openalex.org/I49663120"]}],"countries":["CA"],"is_corresponding":false,"raw_author_name":"Vladimir Makarenkov","raw_affiliation_strings":["1 Department of Computer Science, Universit\u00e9 du Qu\u00e9bec \u00e0 Montr\u00e9al, PO. Box 8888 Downtown Station, Montreal Qc, H3C 3P8 and 2 School of Computer Science, McGill University, 3630 University street #3107, Montreal, Qc, H3A 2B2, Canada"],"affiliations":[{"raw_affiliation_string":"1 Department of Computer Science, Universit\u00e9 du Qu\u00e9bec \u00e0 Montr\u00e9al, PO. Box 8888 Downtown Station, Montreal Qc, H3C 3P8 and 2 School of Computer Science, McGill University, 3630 University street #3107, Montreal, Qc, H3A 2B2, Canada","institution_ids":["https://openalex.org/I159129438","https://openalex.org/I5023651"]}]},{"author_position":"last","author":{"id":"https://openalex.org/A5065720651","display_name":"Mathieu Blanchette","orcid":"https://orcid.org/0000-0002-9555-860X"},"institutions":[{"id":"https://openalex.org/I5023651","display_name":"McGill University","ror":"https://ror.org/01pxwe438","country_code":"CA","type":"education","lineage":["https://openalex.org/I5023651"]},{"id":"https://openalex.org/I159129438","display_name":"Universit\u00e9 du Qu\u00e9bec \u00e0 Montr\u00e9al","ror":"https://ror.org/002rjbv21","country_code":"CA","type":"education","lineage":["https://openalex.org/I159129438","https://openalex.org/I49663120"]}],"countries":["CA"],"is_corresponding":false,"raw_author_name":"Mathieu Blanchette","raw_affiliation_strings":["1 Department of Computer Science, Universit\u00e9 du Qu\u00e9bec \u00e0 Montr\u00e9al, PO. Box 8888 Downtown Station, Montreal Qc, H3C 3P8 and 2 School of Computer Science, McGill University, 3630 University street #3107, Montreal, Qc, H3A 2B2, Canada"],"affiliations":[{"raw_affiliation_string":"1 Department of Computer Science, Universit\u00e9 du Qu\u00e9bec \u00e0 Montr\u00e9al, PO. Box 8888 Downtown Station, Montreal Qc, H3C 3P8 and 2 School of Computer Science, McGill University, 3630 University street #3107, Montreal, Qc, H3A 2B2, Canada","institution_ids":["https://openalex.org/I159129438","https://openalex.org/I5023651"]}]}],"institutions":[],"countries_distinct_count":1,"institutions_distinct_count":3,"corresponding_author_ids":["https://openalex.org/A5061553529"],"corresponding_institution_ids":["https://openalex.org/I159129438","https://openalex.org/I5023651"],"apc_list":{"value":3618,"currency":"USD","value_usd":3618},"apc_paid":null,"fwci":1.3123,"has_fulltext":true,"cited_by_count":43,"citation_normalized_percentile":{"value":0.79600331,"is_in_top_1_percent":false,"is_in_top_10_percent":false},"cited_by_percentile_year":{"min":95,"max":99},"biblio":{"volume":"26","issue":"1","first_page":"130","last_page":"131"},"is_retracted":false,"is_paratext":false,"is_xpac":false,"primary_topic":{"id":"https://openalex.org/T10015","display_name":"Genomics and Phylogenetic Studies","score":0.9998999834060669,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},"topics":[{"id":"https://openalex.org/T10015","display_name":"Genomics and Phylogenetic Studies","score":0.9998999834060669,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},{"id":"https://openalex.org/T10434","display_name":"Chromosomal and Genetic Variations","score":0.9950000047683716,"subfield":{"id":"https://openalex.org/subfields/1110","display_name":"Plant Science"},"field":{"id":"https://openalex.org/fields/11","display_name":"Agricultural and Biological Sciences"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},{"id":"https://openalex.org/T10012","display_name":"Genetic diversity and population structure","score":0.993399977684021,"subfield":{"id":"https://openalex.org/subfields/1311","display_name":"Genetics"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}}],"keywords":[{"id":"https://openalex.org/keywords/synteny","display_name":"Synteny","score":0.7519910335540771},{"id":"https://openalex.org/keywords/inference","display_name":"Inference","score":0.6689632534980774},{"id":"https://openalex.org/keywords/computer-science","display_name":"Computer science","score":0.6499093770980835},{"id":"https://openalex.org/keywords/indel","display_name":"Indel","score":0.5994100570678711},{"id":"https://openalex.org/keywords/genome","display_name":"Genome","score":0.5402261018753052},{"id":"https://openalex.org/keywords/context","display_name":"Context (archaeology)","score":0.5355197191238403},{"id":"https://openalex.org/keywords/sequence","display_name":"Sequence (biology)","score":0.5154924988746643},{"id":"https://openalex.org/keywords/web-server","display_name":"Web server","score":0.4646878242492676},{"id":"https://openalex.org/keywords/biology","display_name":"Biology","score":0.38023337721824646},{"id":"https://openalex.org/keywords/computational-biology","display_name":"Computational biology","score":0.33550500869750977},{"id":"https://openalex.org/keywords/artificial-intelligence","display_name":"Artificial intelligence","score":0.285352498292923},{"id":"https://openalex.org/keywords/the-internet","display_name":"The Internet","score":0.1810278296470642},{"id":"https://openalex.org/keywords/genetics","display_name":"Genetics","score":0.17946481704711914},{"id":"https://openalex.org/keywords/world-wide-web","display_name":"World Wide Web","score":0.13754090666770935},{"id":"https://openalex.org/keywords/gene","display_name":"Gene","score":0.12198391556739807}],"concepts":[{"id":"https://openalex.org/C53702515","wikidata":"https://www.wikidata.org/wiki/Q971246","display_name":"Synteny","level":4,"score":0.7519910335540771},{"id":"https://openalex.org/C2776214188","wikidata":"https://www.wikidata.org/wiki/Q408386","display_name":"Inference","level":2,"score":0.6689632534980774},{"id":"https://openalex.org/C41008148","wikidata":"https://www.wikidata.org/wiki/Q21198","display_name":"Computer science","level":0,"score":0.6499093770980835},{"id":"https://openalex.org/C119054055","wikidata":"https://www.wikidata.org/wiki/Q1576681","display_name":"Indel","level":5,"score":0.5994100570678711},{"id":"https://openalex.org/C141231307","wikidata":"https://www.wikidata.org/wiki/Q7020","display_name":"Genome","level":3,"score":0.5402261018753052},{"id":"https://openalex.org/C2779343474","wikidata":"https://www.wikidata.org/wiki/Q3109175","display_name":"Context (archaeology)","level":2,"score":0.5355197191238403},{"id":"https://openalex.org/C2778112365","wikidata":"https://www.wikidata.org/wiki/Q3511065","display_name":"Sequence (biology)","level":2,"score":0.5154924988746643},{"id":"https://openalex.org/C11392498","wikidata":"https://www.wikidata.org/wiki/Q11288","display_name":"Web server","level":3,"score":0.4646878242492676},{"id":"https://openalex.org/C86803240","wikidata":"https://www.wikidata.org/wiki/Q420","display_name":"Biology","level":0,"score":0.38023337721824646},{"id":"https://openalex.org/C70721500","wikidata":"https://www.wikidata.org/wiki/Q177005","display_name":"Computational biology","level":1,"score":0.33550500869750977},{"id":"https://openalex.org/C154945302","wikidata":"https://www.wikidata.org/wiki/Q11660","display_name":"Artificial intelligence","level":1,"score":0.285352498292923},{"id":"https://openalex.org/C110875604","wikidata":"https://www.wikidata.org/wiki/Q75","display_name":"The Internet","level":2,"score":0.1810278296470642},{"id":"https://openalex.org/C54355233","wikidata":"https://www.wikidata.org/wiki/Q7162","display_name":"Genetics","level":1,"score":0.17946481704711914},{"id":"https://openalex.org/C136764020","wikidata":"https://www.wikidata.org/wiki/Q466","display_name":"World Wide Web","level":1,"score":0.13754090666770935},{"id":"https://openalex.org/C104317684","wikidata":"https://www.wikidata.org/wiki/Q7187","display_name":"Gene","level":2,"score":0.12198391556739807},{"id":"https://openalex.org/C153209595","wikidata":"https://www.wikidata.org/wiki/Q501128","display_name":"Single-nucleotide polymorphism","level":4,"score":0.0},{"id":"https://openalex.org/C135763542","wikidata":"https://www.wikidata.org/wiki/Q106016","display_name":"Genotype","level":3,"score":0.0},{"id":"https://openalex.org/C151730666","wikidata":"https://www.wikidata.org/wiki/Q7205","display_name":"Paleontology","level":1,"score":0.0}],"mesh":[{"descriptor_ui":"D000818","descriptor_name":"Animals","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D000818","descriptor_name":"Animals","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D000818","descriptor_name":"Animals","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D001483","descriptor_name":"Base Sequence","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D001483","descriptor_name":"Base Sequence","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D001483","descriptor_name":"Base Sequence","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D002874","descriptor_name":"Chromosome Mapping","qualifier_ui":"Q000379","qualifier_name":"methods","is_major_topic":false},{"descriptor_ui":"D002874","descriptor_name":"Chromosome Mapping","qualifier_ui":"Q000379","qualifier_name":"methods","is_major_topic":false},{"descriptor_ui":"D002874","descriptor_name":"Chromosome Mapping","qualifier_ui":"Q000379","qualifier_name":"methods","is_major_topic":false},{"descriptor_ui":"D006801","descriptor_name":"Humans","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D006801","descriptor_name":"Humans","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D006801","descriptor_name":"Humans","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D008969","descriptor_name":"Molecular Sequence Data","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D008969","descriptor_name":"Molecular Sequence Data","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D008969","descriptor_name":"Molecular Sequence Data","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D010375","descriptor_name":"Pedigree","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D010375","descriptor_name":"Pedigree","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D010375","descriptor_name":"Pedigree","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D016415","descriptor_name":"Sequence Alignment","qualifier_ui":"Q000379","qualifier_name":"methods","is_major_topic":false},{"descriptor_ui":"D016415","descriptor_name":"Sequence Alignment","qualifier_ui":"Q000379","qualifier_name":"methods","is_major_topic":false},{"descriptor_ui":"D016415","descriptor_name":"Sequence Alignment","qualifier_ui":"Q000379","qualifier_name":"methods","is_major_topic":false},{"descriptor_ui":"D016678","descriptor_name":"Genome","qualifier_ui":"Q000235","qualifier_name":"genetics","is_major_topic":false},{"descriptor_ui":"D016678","descriptor_name":"Genome","qualifier_ui":"Q000235","qualifier_name":"genetics","is_major_topic":false},{"descriptor_ui":"D016678","descriptor_name":"Genome","qualifier_ui":"Q000235","qualifier_name":"genetics","is_major_topic":false},{"descriptor_ui":"D017422","descriptor_name":"Sequence Analysis, DNA","qualifier_ui":"Q000379","qualifier_name":"methods","is_major_topic":false},{"descriptor_ui":"D017422","descriptor_name":"Sequence Analysis, DNA","qualifier_ui":"Q000379","qualifier_name":"methods","is_major_topic":false},{"descriptor_ui":"D017422","descriptor_name":"Sequence Analysis, DNA","qualifier_ui":"Q000379","qualifier_name":"methods","is_major_topic":false},{"descriptor_ui":"D020407","descriptor_name":"Internet","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D020407","descriptor_name":"Internet","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D020407","descriptor_name":"Internet","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true}],"locations_count":2,"locations":[{"id":"doi:10.1093/bioinformatics/btp600","is_oa":true,"landing_page_url":"https://doi.org/10.1093/bioinformatics/btp600","pdf_url":"https://academic.oup.com/bioinformatics/article-pdf/26/1/130/48852138/bioinformatics_26_1_130.pdf","source":{"id":"https://openalex.org/S52395412","display_name":"Bioinformatics","issn_l":"1367-4803","issn":["1367-4803","1367-4811"],"is_oa":false,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310311648","host_organization_name":"Oxford University Press","host_organization_lineage":["https://openalex.org/P4310311648","https://openalex.org/P4310311647"],"host_organization_lineage_names":["Oxford University Press","University of Oxford"],"type":"journal"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Bioinformatics","raw_type":"journal-article"},{"id":"pmid:19850756","is_oa":false,"landing_page_url":"https://pubmed.ncbi.nlm.nih.gov/19850756","pdf_url":null,"source":{"id":"https://openalex.org/S4306525036","display_name":"PubMed","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I1299303238","host_organization_name":"National Institutes of Health","host_organization_lineage":["https://openalex.org/I1299303238"],"host_organization_lineage_names":[],"type":"repository"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Bioinformatics (Oxford, England)","raw_type":null}],"best_oa_location":{"id":"doi:10.1093/bioinformatics/btp600","is_oa":true,"landing_page_url":"https://doi.org/10.1093/bioinformatics/btp600","pdf_url":"https://academic.oup.com/bioinformatics/article-pdf/26/1/130/48852138/bioinformatics_26_1_130.pdf","source":{"id":"https://openalex.org/S52395412","display_name":"Bioinformatics","issn_l":"1367-4803","issn":["1367-4803","1367-4811"],"is_oa":false,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310311648","host_organization_name":"Oxford University Press","host_organization_lineage":["https://openalex.org/P4310311648","https://openalex.org/P4310311647"],"host_organization_lineage_names":["Oxford University Press","University of Oxford"],"type":"journal"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Bioinformatics","raw_type":"journal-article"},"sustainable_development_goals":[],"awards":[],"funders":[],"has_content":{"grobid_xml":true,"pdf":true},"content_urls":{"pdf":"https://content.openalex.org/works/W2109028614.pdf","grobid_xml":"https://content.openalex.org/works/W2109028614.grobid-xml"},"referenced_works_count":16,"referenced_works":["https://openalex.org/W1608071358","https://openalex.org/W1966327236","https://openalex.org/W1966875588","https://openalex.org/W2047530779","https://openalex.org/W2065400176","https://openalex.org/W2102424972","https://openalex.org/W2111762123","https://openalex.org/W2112132489","https://openalex.org/W2132926880","https://openalex.org/W2134155314","https://openalex.org/W2145396697","https://openalex.org/W2146058442","https://openalex.org/W2151120398","https://openalex.org/W2156521045","https://openalex.org/W2164863064","https://openalex.org/W6636350925"],"related_works":["https://openalex.org/W1969010119","https://openalex.org/W2571897395","https://openalex.org/W131717835","https://openalex.org/W2167155214","https://openalex.org/W2626545547","https://openalex.org/W2124599625","https://openalex.org/W2952105401","https://openalex.org/W2347154653","https://openalex.org/W2898754462","https://openalex.org/W2733127495"],"abstract_inverted_index":{"The":[0],"Ancestors":[1],"1.0":[2],"is":[3],"available":[4],"at":[5],"http://ancestors.bioinfo.uqam.ca/ancestorWeb/.":[6]},"counts_by_year":[{"year":2024,"cited_by_count":3},{"year":2022,"cited_by_count":3},{"year":2021,"cited_by_count":3},{"year":2020,"cited_by_count":3},{"year":2018,"cited_by_count":3},{"year":2016,"cited_by_count":5},{"year":2015,"cited_by_count":4},{"year":2014,"cited_by_count":3},{"year":2013,"cited_by_count":6},{"year":2012,"cited_by_count":4}],"updated_date":"2025-11-06T03:46:38.306776","created_date":"2025-10-10T00:00:00"}
