{"id":"https://openalex.org/W2042898046","doi":"https://doi.org/10.1093/bioinformatics/btp565","title":"Lost in translation: an assessment and perspective for computational microRNA target identification","display_name":"Lost in translation: an assessment and perspective for computational microRNA target identification","publication_year":2009,"publication_date":"2009-09-29","ids":{"openalex":"https://openalex.org/W2042898046","doi":"https://doi.org/10.1093/bioinformatics/btp565","mag":"2042898046","pmid":"https://pubmed.ncbi.nlm.nih.gov/19789267"},"language":"en","primary_location":{"id":"doi:10.1093/bioinformatics/btp565","is_oa":true,"landing_page_url":"https://doi.org/10.1093/bioinformatics/btp565","pdf_url":"https://academic.oup.com/bioinformatics/article-pdf/25/23/3049/16891016/btp565.pdf","source":{"id":"https://openalex.org/S4210188263","display_name":"Computer applications in the biosciences","issn_l":"0266-7061","issn":["0266-7061","1460-2059"],"is_oa":false,"is_in_doaj":false,"is_core":true,"host_organization":"https://openalex.org/P4310311648","host_organization_name":"Oxford University Press","host_organization_lineage":["https://openalex.org/P4310311648","https://openalex.org/P4310311647"],"host_organization_lineage_names":["Oxford University Press","University of Oxford"],"type":"journal"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Bioinformatics","raw_type":"journal-article"},"type":"article","indexed_in":["crossref","pubmed"],"open_access":{"is_oa":true,"oa_status":"bronze","oa_url":"https://academic.oup.com/bioinformatics/article-pdf/25/23/3049/16891016/btp565.pdf","any_repository_has_fulltext":false},"authorships":[{"author_position":"first","author":{"id":"https://openalex.org/A5027227036","display_name":"Panagiotis Alexiou","orcid":"https://orcid.org/0000-0003-3437-7482"},"institutions":[{"id":"https://openalex.org/I4210150208","display_name":"Molecular Oncology (United States)","ror":"https://ror.org/04rtkc841","country_code":"US","type":"company","lineage":["https://openalex.org/I4210150208"]},{"id":"https://openalex.org/I6820528","display_name":"Alexander Fleming Biomedical Sciences Research Center","ror":"https://ror.org/013x0ky90","country_code":"GR","type":"facility","lineage":["https://openalex.org/I6820528"]},{"id":"https://openalex.org/I79576946","display_name":"University of Pennsylvania","ror":"https://ror.org/00b30xv10","country_code":"US","type":"education","lineage":["https://openalex.org/I79576946"]}],"countries":["GR","US"],"is_corresponding":false,"raw_author_name":"Panagiotis Alexiou","raw_affiliation_strings":["Institute of Molecular Oncology, Biomedical Sciences Research Center Alexander Fleming, 166 72 Varkiza, Greece. p.alexiou@fleming.gr","Institute of Molecular Oncology, Biomedical Sciences Research Center \u2018Alexander Fleming\u2019, 166 72 Varkiza, Greece, 2 Synaptic Ltd., 700 13 Heraklion, Greece and 3 Computer and Information Sciences, University of Pennsylvania, 19104-6391 Philadelphia, USA"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Institute of Molecular Oncology, Biomedical Sciences Research Center Alexander Fleming, 166 72 Varkiza, Greece. p.alexiou@fleming.gr","institution_ids":["https://openalex.org/I6820528"]},{"raw_affiliation_string":"Institute of Molecular Oncology, Biomedical Sciences Research Center \u2018Alexander Fleming\u2019, 166 72 Varkiza, Greece, 2 Synaptic Ltd., 700 13 Heraklion, Greece and 3 Computer and Information Sciences, University of Pennsylvania, 19104-6391 Philadelphia, USA","institution_ids":["https://openalex.org/I4210150208","https://openalex.org/I6820528","https://openalex.org/I79576946"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5011455160","display_name":"Manolis Maragkakis","orcid":"https://orcid.org/0000-0002-3158-1763"},"institutions":[{"id":"https://openalex.org/I4210150208","display_name":"Molecular Oncology (United States)","ror":"https://ror.org/04rtkc841","country_code":"US","type":"company","lineage":["https://openalex.org/I4210150208"]},{"id":"https://openalex.org/I6820528","display_name":"Alexander Fleming Biomedical Sciences Research Center","ror":"https://ror.org/013x0ky90","country_code":"GR","type":"facility","lineage":["https://openalex.org/I6820528"]},{"id":"https://openalex.org/I79576946","display_name":"University of Pennsylvania","ror":"https://ror.org/00b30xv10","country_code":"US","type":"education","lineage":["https://openalex.org/I79576946"]}],"countries":["GR","US"],"is_corresponding":false,"raw_author_name":"Manolis Maragkakis","raw_affiliation_strings":["Institute of Molecular Oncology, Biomedical Sciences Research Center 'Alexander Fleming', 166 72 Varkiza, Greece,","Institute of Molecular Oncology, Biomedical Sciences Research Center \u2018Alexander Fleming\u2019, 166 72 Varkiza, Greece, 2 Synaptic Ltd., 700 13 Heraklion, Greece and 3 Computer and Information Sciences, University of Pennsylvania, 19104-6391 Philadelphia, USA"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Institute of Molecular Oncology, Biomedical Sciences Research Center 'Alexander Fleming', 166 72 Varkiza, Greece,","institution_ids":["https://openalex.org/I6820528"]},{"raw_affiliation_string":"Institute of Molecular Oncology, Biomedical Sciences Research Center \u2018Alexander Fleming\u2019, 166 72 Varkiza, Greece, 2 Synaptic Ltd., 700 13 Heraklion, Greece and 3 Computer and Information Sciences, University of Pennsylvania, 19104-6391 Philadelphia, USA","institution_ids":["https://openalex.org/I4210150208","https://openalex.org/I6820528","https://openalex.org/I79576946"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5087358026","display_name":"Giorgio L. Papadopoulos","orcid":"https://orcid.org/0000-0003-0199-0256"},"institutions":[{"id":"https://openalex.org/I4210150208","display_name":"Molecular Oncology (United States)","ror":"https://ror.org/04rtkc841","country_code":"US","type":"company","lineage":["https://openalex.org/I4210150208"]},{"id":"https://openalex.org/I6820528","display_name":"Alexander Fleming Biomedical Sciences Research Center","ror":"https://ror.org/013x0ky90","country_code":"GR","type":"facility","lineage":["https://openalex.org/I6820528"]},{"id":"https://openalex.org/I79576946","display_name":"University of Pennsylvania","ror":"https://ror.org/00b30xv10","country_code":"US","type":"education","lineage":["https://openalex.org/I79576946"]}],"countries":["GR","US"],"is_corresponding":false,"raw_author_name":"Giorgos L. Papadopoulos","raw_affiliation_strings":["Institute of Molecular Oncology, Biomedical Sciences Research Center 'Alexander Fleming', 166 72 Varkiza, Greece,","Institute of Molecular Oncology, Biomedical Sciences Research Center \u2018Alexander Fleming\u2019, 166 72 Varkiza, Greece, 2 Synaptic Ltd., 700 13 Heraklion, Greece and 3 Computer and Information Sciences, University of Pennsylvania, 19104-6391 Philadelphia, USA"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Institute of Molecular Oncology, Biomedical Sciences Research Center 'Alexander Fleming', 166 72 Varkiza, Greece,","institution_ids":["https://openalex.org/I6820528"]},{"raw_affiliation_string":"Institute of Molecular Oncology, Biomedical Sciences Research Center \u2018Alexander Fleming\u2019, 166 72 Varkiza, Greece, 2 Synaptic Ltd., 700 13 Heraklion, Greece and 3 Computer and Information Sciences, University of Pennsylvania, 19104-6391 Philadelphia, USA","institution_ids":["https://openalex.org/I4210150208","https://openalex.org/I6820528","https://openalex.org/I79576946"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5004335778","display_name":"Martin Reczko","orcid":"https://orcid.org/0000-0002-0005-8718"},"institutions":[{"id":"https://openalex.org/I4210132327","display_name":"Synaptic Research (United States)","ror":"https://ror.org/03zxxbe81","country_code":"US","type":"company","lineage":["https://openalex.org/I4210132327"]},{"id":"https://openalex.org/I4210150208","display_name":"Molecular Oncology (United States)","ror":"https://ror.org/04rtkc841","country_code":"US","type":"company","lineage":["https://openalex.org/I4210150208"]},{"id":"https://openalex.org/I6820528","display_name":"Alexander Fleming Biomedical Sciences Research Center","ror":"https://ror.org/013x0ky90","country_code":"GR","type":"facility","lineage":["https://openalex.org/I6820528"]},{"id":"https://openalex.org/I79576946","display_name":"University of Pennsylvania","ror":"https://ror.org/00b30xv10","country_code":"US","type":"education","lineage":["https://openalex.org/I79576946"]}],"countries":["GR","US"],"is_corresponding":false,"raw_author_name":"Martin Reczko","raw_affiliation_strings":["Institute of Molecular Oncology, Biomedical Sciences Research Center 'Alexander Fleming', 166 72 Varkiza, Greece,","Synaptic Ltd., 700 13 Heraklion, Greece and","Institute of Molecular Oncology, Biomedical Sciences Research Center \u2018Alexander Fleming\u2019, 166 72 Varkiza, Greece, 2 Synaptic Ltd., 700 13 Heraklion, Greece and 3 Computer and Information Sciences, University of Pennsylvania, 19104-6391 Philadelphia, USA"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Institute of Molecular Oncology, Biomedical Sciences Research Center 'Alexander Fleming', 166 72 Varkiza, Greece,","institution_ids":["https://openalex.org/I6820528"]},{"raw_affiliation_string":"Synaptic Ltd., 700 13 Heraklion, Greece and","institution_ids":["https://openalex.org/I4210132327"]},{"raw_affiliation_string":"Institute of Molecular Oncology, Biomedical Sciences Research Center \u2018Alexander Fleming\u2019, 166 72 Varkiza, Greece, 2 Synaptic Ltd., 700 13 Heraklion, Greece and 3 Computer and Information Sciences, University of Pennsylvania, 19104-6391 Philadelphia, USA","institution_ids":["https://openalex.org/I4210150208","https://openalex.org/I6820528","https://openalex.org/I79576946"]}]},{"author_position":"last","author":{"id":"https://openalex.org/A5084654971","display_name":"Artemis G. Hatzigeorgiou","orcid":"https://orcid.org/0000-0003-1414-5668"},"institutions":[{"id":"https://openalex.org/I110357561","display_name":"University of the Sciences","ror":"https://ror.org/048gmay44","country_code":"US","type":"education","lineage":["https://openalex.org/I110357561"]},{"id":"https://openalex.org/I4210150208","display_name":"Molecular Oncology (United States)","ror":"https://ror.org/04rtkc841","country_code":"US","type":"company","lineage":["https://openalex.org/I4210150208"]},{"id":"https://openalex.org/I6820528","display_name":"Alexander Fleming Biomedical Sciences Research Center","ror":"https://ror.org/013x0ky90","country_code":"GR","type":"facility","lineage":["https://openalex.org/I6820528"]},{"id":"https://openalex.org/I79576946","display_name":"University of Pennsylvania","ror":"https://ror.org/00b30xv10","country_code":"US","type":"education","lineage":["https://openalex.org/I79576946"]},{"id":"https://openalex.org/I922845939","display_name":"Philadelphia University","ror":"https://ror.org/03zzmyz63","country_code":"US","type":"education","lineage":["https://openalex.org/I922845939"]}],"countries":["GR","US"],"is_corresponding":false,"raw_author_name":"Artemis G. Hatzigeorgiou","raw_affiliation_strings":["Computer and Information Sciences, University of Pennsylvania, 19104-6391 Philadelphia, USA","Institute of Molecular Oncology, Biomedical Sciences Research Center 'Alexander Fleming', 166 72 Varkiza, Greece,","Institute of Molecular Oncology, Biomedical Sciences Research Center \u2018Alexander Fleming\u2019, 166 72 Varkiza, Greece, 2 Synaptic Ltd., 700 13 Heraklion, Greece and 3 Computer and Information Sciences, University of Pennsylvania, 19104-6391 Philadelphia, USA"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Computer and Information Sciences, University of Pennsylvania, 19104-6391 Philadelphia, USA","institution_ids":["https://openalex.org/I110357561","https://openalex.org/I79576946","https://openalex.org/I922845939"]},{"raw_affiliation_string":"Institute of Molecular Oncology, Biomedical Sciences Research Center 'Alexander Fleming', 166 72 Varkiza, Greece,","institution_ids":["https://openalex.org/I6820528"]},{"raw_affiliation_string":"Institute of Molecular Oncology, Biomedical Sciences Research Center \u2018Alexander Fleming\u2019, 166 72 Varkiza, Greece, 2 Synaptic Ltd., 700 13 Heraklion, Greece and 3 Computer and Information Sciences, University of Pennsylvania, 19104-6391 Philadelphia, USA","institution_ids":["https://openalex.org/I4210150208","https://openalex.org/I6820528","https://openalex.org/I79576946"]}]}],"institutions":[],"countries_distinct_count":2,"institutions_distinct_count":6,"corresponding_author_ids":[],"corresponding_institution_ids":[],"apc_list":null,"apc_paid":null,"fwci":12.3415,"has_fulltext":true,"cited_by_count":326,"citation_normalized_percentile":{"value":0.98928182,"is_in_top_1_percent":false,"is_in_top_10_percent":true},"cited_by_percentile_year":{"min":97,"max":100},"biblio":{"volume":"25","issue":"23","first_page":"3049","last_page":"3055"},"is_retracted":false,"is_paratext":false,"is_xpac":false,"primary_topic":{"id":"https://openalex.org/T10062","display_name":"MicroRNA in disease regulation","score":0.9581999778747559,"subfield":{"id":"https://openalex.org/subfields/1306","display_name":"Cancer Research"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},"topics":[{"id":"https://openalex.org/T10062","display_name":"MicroRNA in disease regulation","score":0.9581999778747559,"subfield":{"id":"https://openalex.org/subfields/1306","display_name":"Cancer Research"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},{"id":"https://openalex.org/T10515","display_name":"Cancer-related molecular mechanisms research","score":0.00860000029206276,"subfield":{"id":"https://openalex.org/subfields/1306","display_name":"Cancer Research"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},{"id":"https://openalex.org/T11765","display_name":"Circular RNAs in diseases","score":0.00419999985024333,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}}],"keywords":[{"id":"https://openalex.org/keywords/microrna","display_name":"microRNA","score":0.6913266181945801},{"id":"https://openalex.org/keywords/translation","display_name":"Translation (biology)","score":0.6825433373451233},{"id":"https://openalex.org/keywords/perspective","display_name":"Perspective (graphical)","score":0.6707797050476074},{"id":"https://openalex.org/keywords/identification","display_name":"Identification (biology)","score":0.6473801136016846},{"id":"https://openalex.org/keywords/computational-biology","display_name":"Computational biology","score":0.4598364233970642},{"id":"https://openalex.org/keywords/computer-science","display_name":"Computer science","score":0.42651379108428955},{"id":"https://openalex.org/keywords/artificial-intelligence","display_name":"Artificial intelligence","score":0.35620102286338806},{"id":"https://openalex.org/keywords/biology","display_name":"Biology","score":0.2576904594898224},{"id":"https://openalex.org/keywords/genetics","display_name":"Genetics","score":0.14238891005516052},{"id":"https://openalex.org/keywords/messenger-rna","display_name":"Messenger RNA","score":0.07796508073806763},{"id":"https://openalex.org/keywords/ecology","display_name":"Ecology","score":0.061601608991622925}],"concepts":[{"id":"https://openalex.org/C145059251","wikidata":"https://www.wikidata.org/wiki/Q310899","display_name":"microRNA","level":3,"score":0.6913266181945801},{"id":"https://openalex.org/C149364088","wikidata":"https://www.wikidata.org/wiki/Q185917","display_name":"Translation (biology)","level":4,"score":0.6825433373451233},{"id":"https://openalex.org/C12713177","wikidata":"https://www.wikidata.org/wiki/Q1900281","display_name":"Perspective (graphical)","level":2,"score":0.6707797050476074},{"id":"https://openalex.org/C116834253","wikidata":"https://www.wikidata.org/wiki/Q2039217","display_name":"Identification (biology)","level":2,"score":0.6473801136016846},{"id":"https://openalex.org/C70721500","wikidata":"https://www.wikidata.org/wiki/Q177005","display_name":"Computational biology","level":1,"score":0.4598364233970642},{"id":"https://openalex.org/C41008148","wikidata":"https://www.wikidata.org/wiki/Q21198","display_name":"Computer science","level":0,"score":0.42651379108428955},{"id":"https://openalex.org/C154945302","wikidata":"https://www.wikidata.org/wiki/Q11660","display_name":"Artificial intelligence","level":1,"score":0.35620102286338806},{"id":"https://openalex.org/C86803240","wikidata":"https://www.wikidata.org/wiki/Q420","display_name":"Biology","level":0,"score":0.2576904594898224},{"id":"https://openalex.org/C54355233","wikidata":"https://www.wikidata.org/wiki/Q7162","display_name":"Genetics","level":1,"score":0.14238891005516052},{"id":"https://openalex.org/C105580179","wikidata":"https://www.wikidata.org/wiki/Q188928","display_name":"Messenger RNA","level":3,"score":0.07796508073806763},{"id":"https://openalex.org/C18903297","wikidata":"https://www.wikidata.org/wiki/Q7150","display_name":"Ecology","level":1,"score":0.061601608991622925},{"id":"https://openalex.org/C104317684","wikidata":"https://www.wikidata.org/wiki/Q7187","display_name":"Gene","level":2,"score":0.0}],"mesh":[{"descriptor_ui":"D000818","descriptor_name":"Animals","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D000818","descriptor_name":"Animals","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D000818","descriptor_name":"Animals","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D006801","descriptor_name":"Humans","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D006801","descriptor_name":"Humans","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D006801","descriptor_name":"Humans","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D011506","descriptor_name":"Proteins","qualifier_ui":"Q000378","qualifier_name":"metabolism","is_major_topic":false},{"descriptor_ui":"D011506","descriptor_name":"Proteins","qualifier_ui":"Q000378","qualifier_name":"metabolism","is_major_topic":false},{"descriptor_ui":"D011506","descriptor_name":"Proteins","qualifier_ui":"Q000378","qualifier_name":"metabolism","is_major_topic":false},{"descriptor_ui":"D011506","descriptor_name":"Proteins","qualifier_ui":"Q000737","qualifier_name":"chemistry","is_major_topic":false},{"descriptor_ui":"D011506","descriptor_name":"Proteins","qualifier_ui":"Q000737","qualifier_name":"chemistry","is_major_topic":false},{"descriptor_ui":"D011506","descriptor_name":"Proteins","qualifier_ui":"Q000737","qualifier_name":"chemistry","is_major_topic":false},{"descriptor_ui":"D019295","descriptor_name":"Computational Biology","qualifier_ui":"Q000379","qualifier_name":"methods","is_major_topic":false},{"descriptor_ui":"D019295","descriptor_name":"Computational Biology","qualifier_ui":"Q000379","qualifier_name":"methods","is_major_topic":false},{"descriptor_ui":"D019295","descriptor_name":"Computational Biology","qualifier_ui":"Q000379","qualifier_name":"methods","is_major_topic":false},{"descriptor_ui":"D035683","descriptor_name":"MicroRNAs","qualifier_ui":"Q000378","qualifier_name":"metabolism","is_major_topic":false},{"descriptor_ui":"D035683","descriptor_name":"MicroRNAs","qualifier_ui":"Q000378","qualifier_name":"metabolism","is_major_topic":false},{"descriptor_ui":"D035683","descriptor_name":"MicroRNAs","qualifier_ui":"Q000378","qualifier_name":"metabolism","is_major_topic":false},{"descriptor_ui":"D035683","descriptor_name":"MicroRNAs","qualifier_ui":"Q000737","qualifier_name":"chemistry","is_major_topic":false},{"descriptor_ui":"D035683","descriptor_name":"MicroRNAs","qualifier_ui":"Q000737","qualifier_name":"chemistry","is_major_topic":false},{"descriptor_ui":"D035683","descriptor_name":"MicroRNAs","qualifier_ui":"Q000737","qualifier_name":"chemistry","is_major_topic":false}],"locations_count":2,"locations":[{"id":"doi:10.1093/bioinformatics/btp565","is_oa":true,"landing_page_url":"https://doi.org/10.1093/bioinformatics/btp565","pdf_url":"https://academic.oup.com/bioinformatics/article-pdf/25/23/3049/16891016/btp565.pdf","source":{"id":"https://openalex.org/S4210188263","display_name":"Computer applications in the biosciences","issn_l":"0266-7061","issn":["0266-7061","1460-2059"],"is_oa":false,"is_in_doaj":false,"is_core":true,"host_organization":"https://openalex.org/P4310311648","host_organization_name":"Oxford University Press","host_organization_lineage":["https://openalex.org/P4310311648","https://openalex.org/P4310311647"],"host_organization_lineage_names":["Oxford University Press","University of Oxford"],"type":"journal"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Bioinformatics","raw_type":"journal-article"},{"id":"pmid:19789267","is_oa":false,"landing_page_url":"https://pubmed.ncbi.nlm.nih.gov/19789267","pdf_url":null,"source":{"id":"https://openalex.org/S4306525036","display_name":"PubMed","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I1299303238","host_organization_name":"National Institutes of Health","host_organization_lineage":["https://openalex.org/I1299303238"],"host_organization_lineage_names":[],"type":"repository"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Bioinformatics (Oxford, England)","raw_type":null}],"best_oa_location":{"id":"doi:10.1093/bioinformatics/btp565","is_oa":true,"landing_page_url":"https://doi.org/10.1093/bioinformatics/btp565","pdf_url":"https://academic.oup.com/bioinformatics/article-pdf/25/23/3049/16891016/btp565.pdf","source":{"id":"https://openalex.org/S4210188263","display_name":"Computer applications in the biosciences","issn_l":"0266-7061","issn":["0266-7061","1460-2059"],"is_oa":false,"is_in_doaj":false,"is_core":true,"host_organization":"https://openalex.org/P4310311648","host_organization_name":"Oxford University Press","host_organization_lineage":["https://openalex.org/P4310311648","https://openalex.org/P4310311647"],"host_organization_lineage_names":["Oxford University Press","University of Oxford"],"type":"journal"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Bioinformatics","raw_type":"journal-article"},"sustainable_development_goals":[],"awards":[],"funders":[],"has_content":{"grobid_xml":true,"pdf":true},"content_urls":{"pdf":"https://content.openalex.org/works/W2042898046.pdf","grobid_xml":"https://content.openalex.org/works/W2042898046.grobid-xml"},"referenced_works_count":73,"referenced_works":["https://openalex.org/W144423133","https://openalex.org/W1540954024","https://openalex.org/W1648301895","https://openalex.org/W1650512313","https://openalex.org/W1826315897","https://openalex.org/W1920303762","https://openalex.org/W1965371218","https://openalex.org/W1972755526","https://openalex.org/W1972892962","https://openalex.org/W1978337436","https://openalex.org/W1981186391","https://openalex.org/W1984771273","https://openalex.org/W1988163167","https://openalex.org/W1992941735","https://openalex.org/W1996675609","https://openalex.org/W2002995168","https://openalex.org/W2006797972","https://openalex.org/W2013171299","https://openalex.org/W2020080445","https://openalex.org/W2026570544","https://openalex.org/W2028512686","https://openalex.org/W2036224487","https://openalex.org/W2039213901","https://openalex.org/W2039367086","https://openalex.org/W2040191060","https://openalex.org/W2042053144","https://openalex.org/W2045178946","https://openalex.org/W2047291819","https://openalex.org/W2047529648","https://openalex.org/W2050079849","https://openalex.org/W2053490054","https://openalex.org/W2059073003","https://openalex.org/W2059382687","https://openalex.org/W2062290101","https://openalex.org/W2065566217","https://openalex.org/W2067609507","https://openalex.org/W2070571588","https://openalex.org/W2075110522","https://openalex.org/W2083381199","https://openalex.org/W2086415805","https://openalex.org/W2089142809","https://openalex.org/W2090219560","https://openalex.org/W2100975741","https://openalex.org/W2101543035","https://openalex.org/W2103211592","https://openalex.org/W2104806799","https://openalex.org/W2105197182","https://openalex.org/W2109136664","https://openalex.org/W2110064443","https://openalex.org/W2116799486","https://openalex.org/W2120522615","https://openalex.org/W2132194692","https://openalex.org/W2134183254","https://openalex.org/W2135836598","https://openalex.org/W2136991248","https://openalex.org/W2138043022","https://openalex.org/W2138664009","https://openalex.org/W2141521804","https://openalex.org/W2144896290","https://openalex.org/W2149385948","https://openalex.org/W2149785901","https://openalex.org/W2151367367","https://openalex.org/W2151922790","https://openalex.org/W2155318580","https://openalex.org/W2159793493","https://openalex.org/W2160913143","https://openalex.org/W2161693225","https://openalex.org/W2165675181","https://openalex.org/W2167557255","https://openalex.org/W2170647698","https://openalex.org/W3145395549","https://openalex.org/W4285719527","https://openalex.org/W6632472022"],"related_works":["https://openalex.org/W2149537132","https://openalex.org/W641279757","https://openalex.org/W2737319532","https://openalex.org/W370975646","https://openalex.org/W1670566515","https://openalex.org/W596972243","https://openalex.org/W3151405604","https://openalex.org/W4242022592","https://openalex.org/W2565797512","https://openalex.org/W2018871932"],"abstract_inverted_index":{"UNLABELLED:":[0],"MicroRNAs":[1],"(miRNAs)":[2],"are":[3,112],"a":[4,33,40],"class":[5],"of":[6,23,36,43,52,61,77,83,98,102],"short":[7],"endogenously":[8],"expressed":[9],"RNA":[10,22],"molecules":[11],"that":[12],"regulate":[13],"gene":[14],"expression":[15],"by":[16],"binding":[17],"directly":[18],"to":[19,31,57],"the":[20,53,59,70,74,84,99],"messenger":[21],"protein":[24],"coding":[25],"genes.":[26],"They":[27],"have":[28],"been":[29],"found":[30],"confer":[32],"novel":[34],"layer":[35],"genetic":[37],"regulation":[38],"in":[39,63],"wide":[41],"range":[42],"biological":[44],"processes.":[45],"Computational":[46],"miRNA":[47,78,89],"target":[48,90],"prediction":[49,100],"remains":[50],"one":[51],"key":[54],"means":[55],"used":[56,87],"decipher":[58],"role":[60],"miRNAs":[62],"development":[64],"and":[65,80,105],"disease.":[66],"Here":[67],"we":[68],"introduce":[69],"basic":[71],"idea":[72],"behind":[73],"experimental":[75],"identification":[76,91],"targets":[79],"present":[81],"some":[82],"most":[85],"widely":[86],"computational":[88],"programs.":[92],"The":[93],"review":[94],"includes":[95],"an":[96],"assessment":[97],"quality":[101],"these":[103],"programs":[104],"their":[106],"combinations.":[107],"SUPPLEMENTARY":[108],"INFORMATION:":[109],"Supplementary":[110],"data":[111],"available":[113],"at":[114],"Bioinformatics":[115],"online.":[116]},"counts_by_year":[{"year":2026,"cited_by_count":2},{"year":2025,"cited_by_count":4},{"year":2024,"cited_by_count":6},{"year":2023,"cited_by_count":6},{"year":2022,"cited_by_count":7},{"year":2021,"cited_by_count":10},{"year":2020,"cited_by_count":5},{"year":2019,"cited_by_count":15},{"year":2018,"cited_by_count":10},{"year":2017,"cited_by_count":26},{"year":2016,"cited_by_count":23},{"year":2015,"cited_by_count":23},{"year":2014,"cited_by_count":39},{"year":2013,"cited_by_count":32},{"year":2012,"cited_by_count":51}],"updated_date":"2026-07-22T07:51:19.307946","created_date":"2025-10-10T00:00:00"}
