{"id":"https://openalex.org/W2115660134","doi":"https://doi.org/10.1093/bioinformatics/btp534","title":"<i>COMPASS</i>: a program for generating serial samples under an infinite sites model","display_name":"<i>COMPASS</i>: a program for generating serial samples under an infinite sites model","publication_year":2009,"publication_date":"2009-09-17","ids":{"openalex":"https://openalex.org/W2115660134","doi":"https://doi.org/10.1093/bioinformatics/btp534","mag":"2115660134","pmid":"https://pubmed.ncbi.nlm.nih.gov/19762347"},"language":"en","primary_location":{"id":"doi:10.1093/bioinformatics/btp534","is_oa":true,"landing_page_url":"https://doi.org/10.1093/bioinformatics/btp534","pdf_url":"https://academic.oup.com/bioinformatics/article-pdf/25/21/2845/48997583/bioinformatics_25_21_2845.pdf","source":{"id":"https://openalex.org/S52395412","display_name":"Bioinformatics","issn_l":"1367-4803","issn":["1367-4803","1367-4811"],"is_oa":false,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310311648","host_organization_name":"Oxford University Press","host_organization_lineage":["https://openalex.org/P4310311648","https://openalex.org/P4310311647"],"host_organization_lineage_names":["Oxford University Press","University of Oxford"],"type":"journal"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Bioinformatics","raw_type":"journal-article"},"type":"article","indexed_in":["crossref","doaj","pubmed"],"open_access":{"is_oa":true,"oa_status":"bronze","oa_url":"https://academic.oup.com/bioinformatics/article-pdf/25/21/2845/48997583/bioinformatics_25_21_2845.pdf","any_repository_has_fulltext":false},"authorships":[{"author_position":"first","author":{"id":"https://openalex.org/A5005328487","display_name":"Mattias Jakobsson","orcid":"https://orcid.org/0000-0001-7840-7853"},"institutions":[{"id":"https://openalex.org/I123387679","display_name":"Uppsala University","ror":"https://ror.org/048a87296","country_code":"SE","type":"education","lineage":["https://openalex.org/I123387679"]}],"countries":["SE"],"is_corresponding":true,"raw_author_name":"Mattias Jakobsson","raw_affiliation_strings":["Department of Evolutionary Biology, Uppsala University, Norbyv\u00e4gen 18D, 75236 Uppsala, Sweden"],"affiliations":[{"raw_affiliation_string":"Department of Evolutionary Biology, Uppsala University, Norbyv\u00e4gen 18D, 75236 Uppsala, Sweden","institution_ids":["https://openalex.org/I123387679"]}]}],"institutions":[],"countries_distinct_count":1,"institutions_distinct_count":1,"corresponding_author_ids":["https://openalex.org/A5005328487"],"corresponding_institution_ids":["https://openalex.org/I123387679"],"apc_list":{"value":3618,"currency":"USD","value_usd":3618},"apc_paid":null,"fwci":0.9605,"has_fulltext":true,"cited_by_count":10,"citation_normalized_percentile":{"value":0.79226822,"is_in_top_1_percent":false,"is_in_top_10_percent":false},"cited_by_percentile_year":{"min":90,"max":98},"biblio":{"volume":"25","issue":"21","first_page":"2845","last_page":"2847"},"is_retracted":false,"is_paratext":false,"is_xpac":false,"primary_topic":{"id":"https://openalex.org/T11468","display_name":"Genetic Mapping and Diversity in Plants and Animals","score":0.9962999820709229,"subfield":{"id":"https://openalex.org/subfields/1311","display_name":"Genetics"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},"topics":[{"id":"https://openalex.org/T11468","display_name":"Genetic Mapping and Diversity in Plants and Animals","score":0.9962999820709229,"subfield":{"id":"https://openalex.org/subfields/1311","display_name":"Genetics"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},{"id":"https://openalex.org/T11764","display_name":"Evolution and Genetic Dynamics","score":0.9962999820709229,"subfield":{"id":"https://openalex.org/subfields/1311","display_name":"Genetics"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},{"id":"https://openalex.org/T10012","display_name":"Genetic diversity and population structure","score":0.9927999973297119,"subfield":{"id":"https://openalex.org/subfields/1311","display_name":"Genetics"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}}],"keywords":[{"id":"https://openalex.org/keywords/compass","display_name":"Compass","score":0.9117139577865601},{"id":"https://openalex.org/keywords/inference","display_name":"Inference","score":0.6463296413421631},{"id":"https://openalex.org/keywords/population","display_name":"Population","score":0.5638819932937622},{"id":"https://openalex.org/keywords/computer-science","display_name":"Computer science","score":0.4520946145057678},{"id":"https://openalex.org/keywords/genetic-data","display_name":"Genetic data","score":0.45181941986083984},{"id":"https://openalex.org/keywords/statistics","display_name":"Statistics","score":0.40224605798721313},{"id":"https://openalex.org/keywords/cartography","display_name":"Cartography","score":0.3369746804237366},{"id":"https://openalex.org/keywords/artificial-intelligence","display_name":"Artificial intelligence","score":0.28375717997550964},{"id":"https://openalex.org/keywords/geography","display_name":"Geography","score":0.2690824568271637},{"id":"https://openalex.org/keywords/mathematics","display_name":"Mathematics","score":0.20689451694488525},{"id":"https://openalex.org/keywords/demography","display_name":"Demography","score":0.12306168675422668}],"concepts":[{"id":"https://openalex.org/C2778361833","wikidata":"https://www.wikidata.org/wiki/Q34735","display_name":"Compass","level":2,"score":0.9117139577865601},{"id":"https://openalex.org/C2776214188","wikidata":"https://www.wikidata.org/wiki/Q408386","display_name":"Inference","level":2,"score":0.6463296413421631},{"id":"https://openalex.org/C2908647359","wikidata":"https://www.wikidata.org/wiki/Q2625603","display_name":"Population","level":2,"score":0.5638819932937622},{"id":"https://openalex.org/C41008148","wikidata":"https://www.wikidata.org/wiki/Q21198","display_name":"Computer science","level":0,"score":0.4520946145057678},{"id":"https://openalex.org/C2993807623","wikidata":"https://www.wikidata.org/wiki/Q7020","display_name":"Genetic data","level":3,"score":0.45181941986083984},{"id":"https://openalex.org/C105795698","wikidata":"https://www.wikidata.org/wiki/Q12483","display_name":"Statistics","level":1,"score":0.40224605798721313},{"id":"https://openalex.org/C58640448","wikidata":"https://www.wikidata.org/wiki/Q42515","display_name":"Cartography","level":1,"score":0.3369746804237366},{"id":"https://openalex.org/C154945302","wikidata":"https://www.wikidata.org/wiki/Q11660","display_name":"Artificial intelligence","level":1,"score":0.28375717997550964},{"id":"https://openalex.org/C205649164","wikidata":"https://www.wikidata.org/wiki/Q1071","display_name":"Geography","level":0,"score":0.2690824568271637},{"id":"https://openalex.org/C33923547","wikidata":"https://www.wikidata.org/wiki/Q395","display_name":"Mathematics","level":0,"score":0.20689451694488525},{"id":"https://openalex.org/C149923435","wikidata":"https://www.wikidata.org/wiki/Q37732","display_name":"Demography","level":1,"score":0.12306168675422668},{"id":"https://openalex.org/C144024400","wikidata":"https://www.wikidata.org/wiki/Q21201","display_name":"Sociology","level":0,"score":0.0}],"mesh":[{"descriptor_ui":"D011110","descriptor_name":"Polymorphism, Genetic","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D011110","descriptor_name":"Polymorphism, Genetic","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D011110","descriptor_name":"Polymorphism, Genetic","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D012984","descriptor_name":"Software","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D012984","descriptor_name":"Software","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D012984","descriptor_name":"Software","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D019295","descriptor_name":"Computational Biology","qualifier_ui":"Q000379","qualifier_name":"methods","is_major_topic":false},{"descriptor_ui":"D019295","descriptor_name":"Computational Biology","qualifier_ui":"Q000379","qualifier_name":"methods","is_major_topic":false},{"descriptor_ui":"D019295","descriptor_name":"Computational Biology","qualifier_ui":"Q000379","qualifier_name":"methods","is_major_topic":false},{"descriptor_ui":"D030541","descriptor_name":"Databases, Genetic","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D030541","descriptor_name":"Databases, Genetic","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D030541","descriptor_name":"Databases, Genetic","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false}],"locations_count":2,"locations":[{"id":"doi:10.1093/bioinformatics/btp534","is_oa":true,"landing_page_url":"https://doi.org/10.1093/bioinformatics/btp534","pdf_url":"https://academic.oup.com/bioinformatics/article-pdf/25/21/2845/48997583/bioinformatics_25_21_2845.pdf","source":{"id":"https://openalex.org/S52395412","display_name":"Bioinformatics","issn_l":"1367-4803","issn":["1367-4803","1367-4811"],"is_oa":false,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310311648","host_organization_name":"Oxford University Press","host_organization_lineage":["https://openalex.org/P4310311648","https://openalex.org/P4310311647"],"host_organization_lineage_names":["Oxford University Press","University of Oxford"],"type":"journal"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Bioinformatics","raw_type":"journal-article"},{"id":"pmid:19762347","is_oa":false,"landing_page_url":"https://pubmed.ncbi.nlm.nih.gov/19762347","pdf_url":null,"source":{"id":"https://openalex.org/S4306525036","display_name":"PubMed","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I1299303238","host_organization_name":"National Institutes of Health","host_organization_lineage":["https://openalex.org/I1299303238"],"host_organization_lineage_names":[],"type":"repository"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Bioinformatics (Oxford, England)","raw_type":null}],"best_oa_location":{"id":"doi:10.1093/bioinformatics/btp534","is_oa":true,"landing_page_url":"https://doi.org/10.1093/bioinformatics/btp534","pdf_url":"https://academic.oup.com/bioinformatics/article-pdf/25/21/2845/48997583/bioinformatics_25_21_2845.pdf","source":{"id":"https://openalex.org/S52395412","display_name":"Bioinformatics","issn_l":"1367-4803","issn":["1367-4803","1367-4811"],"is_oa":false,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310311648","host_organization_name":"Oxford University Press","host_organization_lineage":["https://openalex.org/P4310311648","https://openalex.org/P4310311647"],"host_organization_lineage_names":["Oxford University Press","University of Oxford"],"type":"journal"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Bioinformatics","raw_type":"journal-article"},"sustainable_development_goals":[],"awards":[{"id":"https://openalex.org/G1999072711","display_name":null,"funder_award_id":"Formas","funder_id":"https://openalex.org/F4320322581","funder_display_name":"Vetenskapsr\u00e5det"}],"funders":[{"id":"https://openalex.org/F4320321033","display_name":"Svenska Forskningsr\u00e5det Formas","ror":"https://ror.org/03pjs1y45"},{"id":"https://openalex.org/F4320322581","display_name":"Vetenskapsr\u00e5det","ror":"https://ror.org/03zttf063"}],"has_content":{"pdf":true,"grobid_xml":true},"content_urls":{"pdf":"https://content.openalex.org/works/W2115660134.pdf","grobid_xml":"https://content.openalex.org/works/W2115660134.grobid-xml"},"referenced_works_count":25,"referenced_works":["https://openalex.org/W603816015","https://openalex.org/W1546828436","https://openalex.org/W1585006589","https://openalex.org/W1915699870","https://openalex.org/W1964350046","https://openalex.org/W1990560732","https://openalex.org/W1998334481","https://openalex.org/W2005743153","https://openalex.org/W2016261345","https://openalex.org/W2023025638","https://openalex.org/W2062026889","https://openalex.org/W2069738694","https://openalex.org/W2116416291","https://openalex.org/W2125359798","https://openalex.org/W2132264356","https://openalex.org/W2134599124","https://openalex.org/W2135668851","https://openalex.org/W2135959118","https://openalex.org/W2147476214","https://openalex.org/W2156610160","https://openalex.org/W2165038845","https://openalex.org/W2319462502","https://openalex.org/W4247464444","https://openalex.org/W6632567943","https://openalex.org/W6678804063"],"related_works":["https://openalex.org/W2206872286","https://openalex.org/W2382913035","https://openalex.org/W2391335452","https://openalex.org/W2113447385","https://openalex.org/W2360876323","https://openalex.org/W2109954054","https://openalex.org/W2642723128","https://openalex.org/W1970764900","https://openalex.org/W2366280361","https://openalex.org/W638953695"],"abstract_inverted_index":{"mattias.jakobsson@ebc.uu.se.":[0]},"counts_by_year":[{"year":2019,"cited_by_count":1},{"year":2014,"cited_by_count":4},{"year":2012,"cited_by_count":2}],"updated_date":"2026-04-18T07:56:08.524223","created_date":"2016-06-24T00:00:00"}
