{"id":"https://openalex.org/W2102111519","doi":"https://doi.org/10.1093/bioinformatics/btp499","title":"CoCoa: a software tool for estimating the coefficient of coancestry from multilocus genotype data","display_name":"CoCoa: a software tool for estimating the coefficient of coancestry from multilocus genotype data","publication_year":2009,"publication_date":"2009-08-17","ids":{"openalex":"https://openalex.org/W2102111519","doi":"https://doi.org/10.1093/bioinformatics/btp499","mag":"2102111519","pmid":"https://pubmed.ncbi.nlm.nih.gov/19689961"},"language":"en","primary_location":{"id":"doi:10.1093/bioinformatics/btp499","is_oa":true,"landing_page_url":"https://doi.org/10.1093/bioinformatics/btp499","pdf_url":"https://academic.oup.com/bioinformatics/article-pdf/25/20/2753/48994299/bioinformatics_25_20_2753.pdf","source":{"id":"https://openalex.org/S52395412","display_name":"Bioinformatics","issn_l":"1367-4803","issn":["1367-4803","1367-4811"],"is_oa":false,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310311648","host_organization_name":"Oxford University Press","host_organization_lineage":["https://openalex.org/P4310311648","https://openalex.org/P4310311647"],"host_organization_lineage_names":["Oxford University Press","University of Oxford"],"type":"journal"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Bioinformatics","raw_type":"journal-article"},"type":"article","indexed_in":["crossref","doaj","pubmed"],"open_access":{"is_oa":true,"oa_status":"bronze","oa_url":"https://academic.oup.com/bioinformatics/article-pdf/25/20/2753/48994299/bioinformatics_25_20_2753.pdf","any_repository_has_fulltext":false},"authorships":[{"author_position":"first","author":{"id":"https://openalex.org/A5030048496","display_name":"Steven Maenhout","orcid":"https://orcid.org/0000-0001-9185-8747"},"institutions":[{"id":"https://openalex.org/I12607205","display_name":"University College Ghent","ror":"https://ror.org/00rs45z86","country_code":"BE","type":"education","lineage":["https://openalex.org/I12607205"]},{"id":"https://openalex.org/I32597200","display_name":"Ghent University","ror":"https://ror.org/00cv9y106","country_code":"BE","type":"education","lineage":["https://openalex.org/I32597200"]}],"countries":["BE"],"is_corresponding":true,"raw_author_name":"Steven Maenhout","raw_affiliation_strings":["1 Department of Biosciences and Landscape Architecture, University College Ghent, Voskenslaan 270 and 2Department of Applied Mathematics, Biometrics and Process Control, Ghent University, Coupure links 653, B-9000 Gent, Belgium"],"affiliations":[{"raw_affiliation_string":"1 Department of Biosciences and Landscape Architecture, University College Ghent, Voskenslaan 270 and 2Department of Applied Mathematics, Biometrics and Process Control, Ghent University, Coupure links 653, B-9000 Gent, Belgium","institution_ids":["https://openalex.org/I32597200","https://openalex.org/I12607205"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5012437460","display_name":"Bernard De Baets","orcid":"https://orcid.org/0000-0002-3876-620X"},"institutions":[{"id":"https://openalex.org/I12607205","display_name":"University College Ghent","ror":"https://ror.org/00rs45z86","country_code":"BE","type":"education","lineage":["https://openalex.org/I12607205"]},{"id":"https://openalex.org/I32597200","display_name":"Ghent University","ror":"https://ror.org/00cv9y106","country_code":"BE","type":"education","lineage":["https://openalex.org/I32597200"]}],"countries":["BE"],"is_corresponding":false,"raw_author_name":"Bernard De Baets","raw_affiliation_strings":["1 Department of Biosciences and Landscape Architecture, University College Ghent, Voskenslaan 270 and 2Department of Applied Mathematics, Biometrics and Process Control, Ghent University, Coupure links 653, B-9000 Gent, Belgium"],"affiliations":[{"raw_affiliation_string":"1 Department of Biosciences and Landscape Architecture, University College Ghent, Voskenslaan 270 and 2Department of Applied Mathematics, Biometrics and Process Control, Ghent University, Coupure links 653, B-9000 Gent, Belgium","institution_ids":["https://openalex.org/I32597200","https://openalex.org/I12607205"]}]},{"author_position":"last","author":{"id":"https://openalex.org/A5014977852","display_name":"Geert Haesaert","orcid":"https://orcid.org/0000-0003-2993-9858"},"institutions":[{"id":"https://openalex.org/I12607205","display_name":"University College Ghent","ror":"https://ror.org/00rs45z86","country_code":"BE","type":"education","lineage":["https://openalex.org/I12607205"]},{"id":"https://openalex.org/I32597200","display_name":"Ghent University","ror":"https://ror.org/00cv9y106","country_code":"BE","type":"education","lineage":["https://openalex.org/I32597200"]}],"countries":["BE"],"is_corresponding":false,"raw_author_name":"Geert Haesaert","raw_affiliation_strings":["1 Department of Biosciences and Landscape Architecture, University College Ghent, Voskenslaan 270 and 2Department of Applied Mathematics, Biometrics and Process Control, Ghent University, Coupure links 653, B-9000 Gent, Belgium"],"affiliations":[{"raw_affiliation_string":"1 Department of Biosciences and Landscape Architecture, University College Ghent, Voskenslaan 270 and 2Department of Applied Mathematics, Biometrics and Process Control, Ghent University, Coupure links 653, B-9000 Gent, Belgium","institution_ids":["https://openalex.org/I32597200","https://openalex.org/I12607205"]}]}],"institutions":[],"countries_distinct_count":1,"institutions_distinct_count":3,"corresponding_author_ids":["https://openalex.org/A5030048496"],"corresponding_institution_ids":["https://openalex.org/I12607205","https://openalex.org/I32597200"],"apc_list":{"value":3618,"currency":"USD","value_usd":3618},"apc_paid":null,"fwci":0.8435,"has_fulltext":true,"cited_by_count":9,"citation_normalized_percentile":{"value":0.81413834,"is_in_top_1_percent":false,"is_in_top_10_percent":false},"cited_by_percentile_year":{"min":89,"max":97},"biblio":{"volume":"25","issue":"20","first_page":"2753","last_page":"2754"},"is_retracted":false,"is_paratext":false,"is_xpac":false,"primary_topic":{"id":"https://openalex.org/T11229","display_name":"Genetics and Plant Breeding","score":0.9990000128746033,"subfield":{"id":"https://openalex.org/subfields/1110","display_name":"Plant Science"},"field":{"id":"https://openalex.org/fields/11","display_name":"Agricultural and Biological Sciences"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},"topics":[{"id":"https://openalex.org/T11229","display_name":"Genetics and Plant Breeding","score":0.9990000128746033,"subfield":{"id":"https://openalex.org/subfields/1110","display_name":"Plant Science"},"field":{"id":"https://openalex.org/fields/11","display_name":"Agricultural and Biological Sciences"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},{"id":"https://openalex.org/T12795","display_name":"Banana Cultivation and Research","score":0.9972000122070312,"subfield":{"id":"https://openalex.org/subfields/1110","display_name":"Plant Science"},"field":{"id":"https://openalex.org/fields/11","display_name":"Agricultural and Biological Sciences"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},{"id":"https://openalex.org/T10594","display_name":"Genetic and phenotypic traits in livestock","score":0.9955999851226807,"subfield":{"id":"https://openalex.org/subfields/1311","display_name":"Genetics"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}}],"keywords":[{"id":"https://openalex.org/keywords/computer-science","display_name":"Computer science","score":0.6607534289360046},{"id":"https://openalex.org/keywords/software","display_name":"Software","score":0.623988151550293},{"id":"https://openalex.org/keywords/estimator","display_name":"Estimator","score":0.540338397026062},{"id":"https://openalex.org/keywords/breeding-program","display_name":"Breeding program","score":0.5059089064598083},{"id":"https://openalex.org/keywords/pairwise-comparison","display_name":"Pairwise comparison","score":0.4974108040332794},{"id":"https://openalex.org/keywords/source-code","display_name":"Source code","score":0.4811457395553589},{"id":"https://openalex.org/keywords/covariance-matrix","display_name":"Covariance matrix","score":0.45118480920791626},{"id":"https://openalex.org/keywords/covariance","display_name":"Covariance","score":0.43941304087638855},{"id":"https://openalex.org/keywords/statistics","display_name":"Statistics","score":0.4334968328475952},{"id":"https://openalex.org/keywords/data-mining","display_name":"Data mining","score":0.41404274106025696},{"id":"https://openalex.org/keywords/algorithm","display_name":"Algorithm","score":0.3190928101539612},{"id":"https://openalex.org/keywords/biology","display_name":"Biology","score":0.27719855308532715},{"id":"https://openalex.org/keywords/mathematics","display_name":"Mathematics","score":0.23303738236427307},{"id":"https://openalex.org/keywords/artificial-intelligence","display_name":"Artificial intelligence","score":0.13199129700660706},{"id":"https://openalex.org/keywords/programming-language","display_name":"Programming language","score":0.11157172918319702}],"concepts":[{"id":"https://openalex.org/C41008148","wikidata":"https://www.wikidata.org/wiki/Q21198","display_name":"Computer science","level":0,"score":0.6607534289360046},{"id":"https://openalex.org/C2777904410","wikidata":"https://www.wikidata.org/wiki/Q7397","display_name":"Software","level":2,"score":0.623988151550293},{"id":"https://openalex.org/C185429906","wikidata":"https://www.wikidata.org/wiki/Q1130160","display_name":"Estimator","level":2,"score":0.540338397026062},{"id":"https://openalex.org/C104959735","wikidata":"https://www.wikidata.org/wiki/Q4960291","display_name":"Breeding program","level":3,"score":0.5059089064598083},{"id":"https://openalex.org/C184898388","wikidata":"https://www.wikidata.org/wiki/Q1435712","display_name":"Pairwise comparison","level":2,"score":0.4974108040332794},{"id":"https://openalex.org/C43126263","wikidata":"https://www.wikidata.org/wiki/Q128751","display_name":"Source code","level":2,"score":0.4811457395553589},{"id":"https://openalex.org/C185142706","wikidata":"https://www.wikidata.org/wiki/Q1134404","display_name":"Covariance matrix","level":2,"score":0.45118480920791626},{"id":"https://openalex.org/C178650346","wikidata":"https://www.wikidata.org/wiki/Q201984","display_name":"Covariance","level":2,"score":0.43941304087638855},{"id":"https://openalex.org/C105795698","wikidata":"https://www.wikidata.org/wiki/Q12483","display_name":"Statistics","level":1,"score":0.4334968328475952},{"id":"https://openalex.org/C124101348","wikidata":"https://www.wikidata.org/wiki/Q172491","display_name":"Data mining","level":1,"score":0.41404274106025696},{"id":"https://openalex.org/C11413529","wikidata":"https://www.wikidata.org/wiki/Q8366","display_name":"Algorithm","level":1,"score":0.3190928101539612},{"id":"https://openalex.org/C86803240","wikidata":"https://www.wikidata.org/wiki/Q420","display_name":"Biology","level":0,"score":0.27719855308532715},{"id":"https://openalex.org/C33923547","wikidata":"https://www.wikidata.org/wiki/Q395","display_name":"Mathematics","level":0,"score":0.23303738236427307},{"id":"https://openalex.org/C154945302","wikidata":"https://www.wikidata.org/wiki/Q11660","display_name":"Artificial intelligence","level":1,"score":0.13199129700660706},{"id":"https://openalex.org/C199360897","wikidata":"https://www.wikidata.org/wiki/Q9143","display_name":"Programming language","level":1,"score":0.11157172918319702},{"id":"https://openalex.org/C197321923","wikidata":"https://www.wikidata.org/wiki/Q4886","display_name":"Cultivar","level":2,"score":0.0},{"id":"https://openalex.org/C144027150","wikidata":"https://www.wikidata.org/wiki/Q48803","display_name":"Horticulture","level":1,"score":0.0}],"mesh":[{"descriptor_ui":"D005838","descriptor_name":"Genotype","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D005838","descriptor_name":"Genotype","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D005838","descriptor_name":"Genotype","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D010641","descriptor_name":"Phenotype","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D010641","descriptor_name":"Phenotype","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D010641","descriptor_name":"Phenotype","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D011381","descriptor_name":"Programming Languages","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D011381","descriptor_name":"Programming Languages","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D011381","descriptor_name":"Programming Languages","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D012984","descriptor_name":"Software","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D012984","descriptor_name":"Software","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D012984","descriptor_name":"Software","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D019295","descriptor_name":"Computational Biology","qualifier_ui":"Q000379","qualifier_name":"methods","is_major_topic":false},{"descriptor_ui":"D019295","descriptor_name":"Computational Biology","qualifier_ui":"Q000379","qualifier_name":"methods","is_major_topic":false},{"descriptor_ui":"D019295","descriptor_name":"Computational Biology","qualifier_ui":"Q000379","qualifier_name":"methods","is_major_topic":false}],"locations_count":4,"locations":[{"id":"doi:10.1093/bioinformatics/btp499","is_oa":true,"landing_page_url":"https://doi.org/10.1093/bioinformatics/btp499","pdf_url":"https://academic.oup.com/bioinformatics/article-pdf/25/20/2753/48994299/bioinformatics_25_20_2753.pdf","source":{"id":"https://openalex.org/S52395412","display_name":"Bioinformatics","issn_l":"1367-4803","issn":["1367-4803","1367-4811"],"is_oa":false,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310311648","host_organization_name":"Oxford University Press","host_organization_lineage":["https://openalex.org/P4310311648","https://openalex.org/P4310311647"],"host_organization_lineage_names":["Oxford University Press","University of Oxford"],"type":"journal"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Bioinformatics","raw_type":"journal-article"},{"id":"pmid:19689961","is_oa":false,"landing_page_url":"https://pubmed.ncbi.nlm.nih.gov/19689961","pdf_url":null,"source":{"id":"https://openalex.org/S4306525036","display_name":"PubMed","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I1299303238","host_organization_name":"National Institutes of Health","host_organization_lineage":["https://openalex.org/I1299303238"],"host_organization_lineage_names":[],"type":"repository"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Bioinformatics (Oxford, England)","raw_type":null},{"id":"pmh:oai:CiteSeerX.psu:10.1.1.850.9977","is_oa":false,"landing_page_url":"http://citeseerx.ist.psu.edu/viewdoc/summary?doi=10.1.1.850.9977","pdf_url":null,"source":null,"license":null,"license_id":null,"version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":"http://bioinformatics.oxfordjournals.org/content/early/2009/08/17/bioinformatics.btp499.full.pdf","raw_type":"text"},{"id":"pmh:oai:archive.ugent.be:783880","is_oa":false,"landing_page_url":"http://hdl.handle.net/1854/LU-783880","pdf_url":null,"source":{"id":"https://openalex.org/S4306400478","display_name":"Ghent University Academic Bibliography (Ghent University)","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I32597200","host_organization_name":"Ghent University","host_organization_lineage":["https://openalex.org/I32597200"],"host_organization_lineage_names":[],"type":"repository"},"license":null,"license_id":null,"version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":"ISSN: 1367-4803","raw_type":"info:eu-repo/semantics/publishedVersion"}],"best_oa_location":{"id":"doi:10.1093/bioinformatics/btp499","is_oa":true,"landing_page_url":"https://doi.org/10.1093/bioinformatics/btp499","pdf_url":"https://academic.oup.com/bioinformatics/article-pdf/25/20/2753/48994299/bioinformatics_25_20_2753.pdf","source":{"id":"https://openalex.org/S52395412","display_name":"Bioinformatics","issn_l":"1367-4803","issn":["1367-4803","1367-4811"],"is_oa":false,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310311648","host_organization_name":"Oxford University Press","host_organization_lineage":["https://openalex.org/P4310311648","https://openalex.org/P4310311647"],"host_organization_lineage_names":["Oxford University Press","University of Oxford"],"type":"journal"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Bioinformatics","raw_type":"journal-article"},"sustainable_development_goals":[],"awards":[],"funders":[],"has_content":{"pdf":true,"grobid_xml":true},"content_urls":{"pdf":"https://content.openalex.org/works/W2102111519.pdf","grobid_xml":"https://content.openalex.org/works/W2102111519.grobid-xml"},"referenced_works_count":11,"referenced_works":["https://openalex.org/W1483260505","https://openalex.org/W1965848299","https://openalex.org/W1976575447","https://openalex.org/W2017808687","https://openalex.org/W2025621308","https://openalex.org/W2075330092","https://openalex.org/W2098126593","https://openalex.org/W2134036574","https://openalex.org/W2190142931","https://openalex.org/W2326847038","https://openalex.org/W6687132676"],"related_works":["https://openalex.org/W2487162673","https://openalex.org/W2942366970","https://openalex.org/W2793211469","https://openalex.org/W2949152769","https://openalex.org/W4372354731","https://openalex.org/W2562400057","https://openalex.org/W1692008701","https://openalex.org/W2886934452","https://openalex.org/W1489099099","https://openalex.org/W1974955043"],"abstract_inverted_index":{"The":[0,27],"software":[1],"package":[2],"CoCoa":[3,31],"is":[4,41],"freely":[5],"available":[6],"at":[7],"http://webs.hogent.be/cocoa.":[8],"Source":[9],"code,":[10],"manual,":[11],"binaries":[12],"for":[13,22],"32":[14],"and":[15,19],"64-bit":[16],"Linux":[17],"systems":[18],"an":[20],"installer":[21],"Microsoft":[23],"Windows":[24],"are":[25,32],"provided.":[26],"core":[28],"components":[29],"of":[30],"written":[33,42],"in":[34,43],"C++,":[35],"while":[36],"the":[37],"graphical":[38],"user":[39],"interface":[40],"Java.":[44]},"counts_by_year":[{"year":2021,"cited_by_count":1},{"year":2016,"cited_by_count":2},{"year":2015,"cited_by_count":1},{"year":2013,"cited_by_count":3},{"year":2012,"cited_by_count":1}],"updated_date":"2026-04-05T17:49:38.594831","created_date":"2025-10-10T00:00:00"}
