{"id":"https://openalex.org/W2138776954","doi":"https://doi.org/10.1093/bioinformatics/btp494","title":"Simultaneous inference of biological networks of multiple species from genome-wide data and evolutionary information: a semi-supervised approach","display_name":"Simultaneous inference of biological networks of multiple species from genome-wide data and evolutionary information: a semi-supervised approach","publication_year":2009,"publication_date":"2009-08-17","ids":{"openalex":"https://openalex.org/W2138776954","doi":"https://doi.org/10.1093/bioinformatics/btp494","mag":"2138776954","pmid":"https://pubmed.ncbi.nlm.nih.gov/19689962"},"language":"en","primary_location":{"id":"doi:10.1093/bioinformatics/btp494","is_oa":true,"landing_page_url":"https://doi.org/10.1093/bioinformatics/btp494","pdf_url":"https://academic.oup.com/bioinformatics/article-pdf/25/22/2962/48998166/bioinformatics_25_22_2962.pdf","source":{"id":"https://openalex.org/S52395412","display_name":"Bioinformatics","issn_l":"1367-4803","issn":["1367-4803","1367-4811"],"is_oa":false,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310311648","host_organization_name":"Oxford University Press","host_organization_lineage":["https://openalex.org/P4310311648","https://openalex.org/P4310311647"],"host_organization_lineage_names":["Oxford University Press","University of Oxford"],"type":"journal"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Bioinformatics","raw_type":"journal-article"},"type":"article","indexed_in":["crossref","doaj","pubmed"],"open_access":{"is_oa":true,"oa_status":"bronze","oa_url":"https://academic.oup.com/bioinformatics/article-pdf/25/22/2962/48998166/bioinformatics_25_22_2962.pdf","any_repository_has_fulltext":false},"authorships":[{"author_position":"first","author":{"id":"https://openalex.org/A5102905217","display_name":"Hisashi Kashima","orcid":"https://orcid.org/0000-0002-5906-7571"},"institutions":[{"id":"https://openalex.org/I70768539","display_name":"\u00c9cole Nationale Sup\u00e9rieure des Mines de Paris","ror":"https://ror.org/04y8cs423","country_code":"FR","type":"education","lineage":["https://openalex.org/I190752583","https://openalex.org/I2746051580","https://openalex.org/I70768539"]},{"id":"https://openalex.org/I154526488","display_name":"Inserm","ror":"https://ror.org/02vjkv261","country_code":"FR","type":"funder","lineage":["https://openalex.org/I154526488"]},{"id":"https://openalex.org/I73613424","display_name":"National Institute of Advanced Industrial Science and Technology","ror":"https://ror.org/01703db54","country_code":"JP","type":"government","lineage":["https://openalex.org/I73613424"]},{"id":"https://openalex.org/I26120043","display_name":"Ochanomizu University","ror":"https://ror.org/03599d813","country_code":"JP","type":"education","lineage":["https://openalex.org/I26120043"]},{"id":"https://openalex.org/I80043","display_name":"Institut Curie","ror":"https://ror.org/04t0gwh46","country_code":"FR","type":"funder","lineage":["https://openalex.org/I80043"]},{"id":"https://openalex.org/I4210145865","display_name":"IBM Research - Tokyo","ror":"https://ror.org/04915qk43","country_code":"JP","type":"facility","lineage":["https://openalex.org/I1341412227","https://openalex.org/I4210114115","https://openalex.org/I4210145865"]}],"countries":["FR","JP"],"is_corresponding":true,"raw_author_name":"Hisashi Kashima","raw_affiliation_strings":["1 IBM Research, Tokyo Research Laboratory, 1623-14 Shimo-tsuruma, Yamato, Kanagawa, 242-8502 Japan, 2Mines ParisTech, Centre for Computational Biology, 35 rue Saint-Honore, F-77305 Fontainebleau Cedex, France, 3Institut Curie, 4INSERM, U900, F-75248, Paris, France, 5Ochanomizu University, Center for Informational Biology, 2-1-1 Ohtsuka, Bunkyo-ku, Tokyo 112-8610, 6Tokyo Institute of Technology, Department of Computer Science, 2-12-1, O-okayama, Meguro-ku, Tokyo 152-8552 and 7National Institute of Advanced Industrial Science and Technology, Computational Biology Research Center (AIST), 2-42 Aomi, Koto-ku, Tokyo 135-0064, Japan"],"affiliations":[{"raw_affiliation_string":"1 IBM Research, Tokyo Research Laboratory, 1623-14 Shimo-tsuruma, Yamato, Kanagawa, 242-8502 Japan, 2Mines ParisTech, Centre for Computational Biology, 35 rue Saint-Honore, F-77305 Fontainebleau Cedex, France, 3Institut Curie, 4INSERM, U900, F-75248, Paris, France, 5Ochanomizu University, Center for Informational Biology, 2-1-1 Ohtsuka, Bunkyo-ku, Tokyo 112-8610, 6Tokyo Institute of Technology, Department of Computer Science, 2-12-1, O-okayama, Meguro-ku, Tokyo 152-8552 and 7National Institute of Advanced Industrial Science and Technology, Computational Biology Research Center (AIST), 2-42 Aomi, Koto-ku, Tokyo 135-0064, Japan","institution_ids":["https://openalex.org/I70768539","https://openalex.org/I80043","https://openalex.org/I4210145865","https://openalex.org/I26120043","https://openalex.org/I73613424","https://openalex.org/I154526488"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5035394108","display_name":"Yoshihiro Yamanishi","orcid":"https://orcid.org/0000-0003-2279-8773"},"institutions":[{"id":"https://openalex.org/I26120043","display_name":"Ochanomizu University","ror":"https://ror.org/03599d813","country_code":"JP","type":"education","lineage":["https://openalex.org/I26120043"]},{"id":"https://openalex.org/I70768539","display_name":"\u00c9cole Nationale Sup\u00e9rieure des Mines de Paris","ror":"https://ror.org/04y8cs423","country_code":"FR","type":"education","lineage":["https://openalex.org/I190752583","https://openalex.org/I2746051580","https://openalex.org/I70768539"]},{"id":"https://openalex.org/I4210145865","display_name":"IBM Research - Tokyo","ror":"https://ror.org/04915qk43","country_code":"JP","type":"facility","lineage":["https://openalex.org/I1341412227","https://openalex.org/I4210114115","https://openalex.org/I4210145865"]},{"id":"https://openalex.org/I154526488","display_name":"Inserm","ror":"https://ror.org/02vjkv261","country_code":"FR","type":"funder","lineage":["https://openalex.org/I154526488"]},{"id":"https://openalex.org/I73613424","display_name":"National Institute of Advanced Industrial Science and Technology","ror":"https://ror.org/01703db54","country_code":"JP","type":"government","lineage":["https://openalex.org/I73613424"]},{"id":"https://openalex.org/I80043","display_name":"Institut Curie","ror":"https://ror.org/04t0gwh46","country_code":"FR","type":"funder","lineage":["https://openalex.org/I80043"]}],"countries":["FR","JP"],"is_corresponding":false,"raw_author_name":"Yoshihiro Yamanishi","raw_affiliation_strings":["1 IBM Research, Tokyo Research Laboratory, 1623-14 Shimo-tsuruma, Yamato, Kanagawa, 242-8502 Japan, 2Mines ParisTech, Centre for Computational Biology, 35 rue Saint-Honore, F-77305 Fontainebleau Cedex, France, 3Institut Curie, 4INSERM, U900, F-75248, Paris, France, 5Ochanomizu University, Center for Informational Biology, 2-1-1 Ohtsuka, Bunkyo-ku, Tokyo 112-8610, 6Tokyo Institute of Technology, Department of Computer Science, 2-12-1, O-okayama, Meguro-ku, Tokyo 152-8552 and 7National Institute of Advanced Industrial Science and Technology, Computational Biology Research Center (AIST), 2-42 Aomi, Koto-ku, Tokyo 135-0064, Japan"],"affiliations":[{"raw_affiliation_string":"1 IBM Research, Tokyo Research Laboratory, 1623-14 Shimo-tsuruma, Yamato, Kanagawa, 242-8502 Japan, 2Mines ParisTech, Centre for Computational Biology, 35 rue Saint-Honore, F-77305 Fontainebleau Cedex, France, 3Institut Curie, 4INSERM, U900, F-75248, Paris, France, 5Ochanomizu University, Center for Informational Biology, 2-1-1 Ohtsuka, Bunkyo-ku, Tokyo 112-8610, 6Tokyo Institute of Technology, Department of Computer Science, 2-12-1, O-okayama, Meguro-ku, Tokyo 152-8552 and 7National Institute of Advanced Industrial Science and Technology, Computational Biology Research Center (AIST), 2-42 Aomi, Koto-ku, Tokyo 135-0064, Japan","institution_ids":["https://openalex.org/I70768539","https://openalex.org/I80043","https://openalex.org/I4210145865","https://openalex.org/I26120043","https://openalex.org/I73613424","https://openalex.org/I154526488"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5031832499","display_name":"Tsuyoshi Kato","orcid":"https://orcid.org/0000-0001-5311-4966"},"institutions":[{"id":"https://openalex.org/I80043","display_name":"Institut Curie","ror":"https://ror.org/04t0gwh46","country_code":"FR","type":"funder","lineage":["https://openalex.org/I80043"]},{"id":"https://openalex.org/I73613424","display_name":"National Institute of Advanced Industrial Science and Technology","ror":"https://ror.org/01703db54","country_code":"JP","type":"government","lineage":["https://openalex.org/I73613424"]},{"id":"https://openalex.org/I26120043","display_name":"Ochanomizu University","ror":"https://ror.org/03599d813","country_code":"JP","type":"education","lineage":["https://openalex.org/I26120043"]},{"id":"https://openalex.org/I4210145865","display_name":"IBM Research - Tokyo","ror":"https://ror.org/04915qk43","country_code":"JP","type":"facility","lineage":["https://openalex.org/I1341412227","https://openalex.org/I4210114115","https://openalex.org/I4210145865"]},{"id":"https://openalex.org/I154526488","display_name":"Inserm","ror":"https://ror.org/02vjkv261","country_code":"FR","type":"funder","lineage":["https://openalex.org/I154526488"]},{"id":"https://openalex.org/I70768539","display_name":"\u00c9cole Nationale Sup\u00e9rieure des Mines de Paris","ror":"https://ror.org/04y8cs423","country_code":"FR","type":"education","lineage":["https://openalex.org/I190752583","https://openalex.org/I2746051580","https://openalex.org/I70768539"]}],"countries":["FR","JP"],"is_corresponding":false,"raw_author_name":"Tsuyoshi Kato","raw_affiliation_strings":["1 IBM Research, Tokyo Research Laboratory, 1623-14 Shimo-tsuruma, Yamato, Kanagawa, 242-8502 Japan, 2Mines ParisTech, Centre for Computational Biology, 35 rue Saint-Honore, F-77305 Fontainebleau Cedex, France, 3Institut Curie, 4INSERM, U900, F-75248, Paris, France, 5Ochanomizu University, Center for Informational Biology, 2-1-1 Ohtsuka, Bunkyo-ku, Tokyo 112-8610, 6Tokyo Institute of Technology, Department of Computer Science, 2-12-1, O-okayama, Meguro-ku, Tokyo 152-8552 and 7National Institute of Advanced Industrial Science and Technology, Computational Biology Research Center (AIST), 2-42 Aomi, Koto-ku, Tokyo 135-0064, Japan"],"affiliations":[{"raw_affiliation_string":"1 IBM Research, Tokyo Research Laboratory, 1623-14 Shimo-tsuruma, Yamato, Kanagawa, 242-8502 Japan, 2Mines ParisTech, Centre for Computational Biology, 35 rue Saint-Honore, F-77305 Fontainebleau Cedex, France, 3Institut Curie, 4INSERM, U900, F-75248, Paris, France, 5Ochanomizu University, Center for Informational Biology, 2-1-1 Ohtsuka, Bunkyo-ku, Tokyo 112-8610, 6Tokyo Institute of Technology, Department of Computer Science, 2-12-1, O-okayama, Meguro-ku, Tokyo 152-8552 and 7National Institute of Advanced Industrial Science and Technology, Computational Biology Research Center (AIST), 2-42 Aomi, Koto-ku, Tokyo 135-0064, Japan","institution_ids":["https://openalex.org/I70768539","https://openalex.org/I80043","https://openalex.org/I4210145865","https://openalex.org/I26120043","https://openalex.org/I73613424","https://openalex.org/I154526488"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5072744508","display_name":"Masashi Sugiyama","orcid":"https://orcid.org/0000-0001-6658-6743"},"institutions":[{"id":"https://openalex.org/I154526488","display_name":"Inserm","ror":"https://ror.org/02vjkv261","country_code":"FR","type":"funder","lineage":["https://openalex.org/I154526488"]},{"id":"https://openalex.org/I26120043","display_name":"Ochanomizu University","ror":"https://ror.org/03599d813","country_code":"JP","type":"education","lineage":["https://openalex.org/I26120043"]},{"id":"https://openalex.org/I4210145865","display_name":"IBM Research - Tokyo","ror":"https://ror.org/04915qk43","country_code":"JP","type":"facility","lineage":["https://openalex.org/I1341412227","https://openalex.org/I4210114115","https://openalex.org/I4210145865"]},{"id":"https://openalex.org/I70768539","display_name":"\u00c9cole Nationale Sup\u00e9rieure des Mines de Paris","ror":"https://ror.org/04y8cs423","country_code":"FR","type":"education","lineage":["https://openalex.org/I190752583","https://openalex.org/I2746051580","https://openalex.org/I70768539"]},{"id":"https://openalex.org/I80043","display_name":"Institut Curie","ror":"https://ror.org/04t0gwh46","country_code":"FR","type":"funder","lineage":["https://openalex.org/I80043"]},{"id":"https://openalex.org/I73613424","display_name":"National Institute of Advanced Industrial Science and Technology","ror":"https://ror.org/01703db54","country_code":"JP","type":"government","lineage":["https://openalex.org/I73613424"]}],"countries":["FR","JP"],"is_corresponding":false,"raw_author_name":"Masashi Sugiyama","raw_affiliation_strings":["1 IBM Research, Tokyo Research Laboratory, 1623-14 Shimo-tsuruma, Yamato, Kanagawa, 242-8502 Japan, 2Mines ParisTech, Centre for Computational Biology, 35 rue Saint-Honore, F-77305 Fontainebleau Cedex, France, 3Institut Curie, 4INSERM, U900, F-75248, Paris, France, 5Ochanomizu University, Center for Informational Biology, 2-1-1 Ohtsuka, Bunkyo-ku, Tokyo 112-8610, 6Tokyo Institute of Technology, Department of Computer Science, 2-12-1, O-okayama, Meguro-ku, Tokyo 152-8552 and 7National Institute of Advanced Industrial Science and Technology, Computational Biology Research Center (AIST), 2-42 Aomi, Koto-ku, Tokyo 135-0064, Japan"],"affiliations":[{"raw_affiliation_string":"1 IBM Research, Tokyo Research Laboratory, 1623-14 Shimo-tsuruma, Yamato, Kanagawa, 242-8502 Japan, 2Mines ParisTech, Centre for Computational Biology, 35 rue Saint-Honore, F-77305 Fontainebleau Cedex, France, 3Institut Curie, 4INSERM, U900, F-75248, Paris, France, 5Ochanomizu University, Center for Informational Biology, 2-1-1 Ohtsuka, Bunkyo-ku, Tokyo 112-8610, 6Tokyo Institute of Technology, Department of Computer Science, 2-12-1, O-okayama, Meguro-ku, Tokyo 152-8552 and 7National Institute of Advanced Industrial Science and Technology, Computational Biology Research Center (AIST), 2-42 Aomi, Koto-ku, Tokyo 135-0064, Japan","institution_ids":["https://openalex.org/I70768539","https://openalex.org/I80043","https://openalex.org/I4210145865","https://openalex.org/I26120043","https://openalex.org/I73613424","https://openalex.org/I154526488"]}]},{"author_position":"last","author":{"id":"https://openalex.org/A5070597006","display_name":"Koji Tsuda","orcid":"https://orcid.org/0000-0002-4288-1606"},"institutions":[{"id":"https://openalex.org/I80043","display_name":"Institut Curie","ror":"https://ror.org/04t0gwh46","country_code":"FR","type":"funder","lineage":["https://openalex.org/I80043"]},{"id":"https://openalex.org/I26120043","display_name":"Ochanomizu University","ror":"https://ror.org/03599d813","country_code":"JP","type":"education","lineage":["https://openalex.org/I26120043"]},{"id":"https://openalex.org/I70768539","display_name":"\u00c9cole Nationale Sup\u00e9rieure des Mines de Paris","ror":"https://ror.org/04y8cs423","country_code":"FR","type":"education","lineage":["https://openalex.org/I190752583","https://openalex.org/I2746051580","https://openalex.org/I70768539"]},{"id":"https://openalex.org/I154526488","display_name":"Inserm","ror":"https://ror.org/02vjkv261","country_code":"FR","type":"funder","lineage":["https://openalex.org/I154526488"]},{"id":"https://openalex.org/I4210145865","display_name":"IBM Research - Tokyo","ror":"https://ror.org/04915qk43","country_code":"JP","type":"facility","lineage":["https://openalex.org/I1341412227","https://openalex.org/I4210114115","https://openalex.org/I4210145865"]},{"id":"https://openalex.org/I73613424","display_name":"National Institute of Advanced Industrial Science and Technology","ror":"https://ror.org/01703db54","country_code":"JP","type":"government","lineage":["https://openalex.org/I73613424"]}],"countries":["FR","JP"],"is_corresponding":false,"raw_author_name":"Koji Tsuda","raw_affiliation_strings":["1 IBM Research, Tokyo Research Laboratory, 1623-14 Shimo-tsuruma, Yamato, Kanagawa, 242-8502 Japan, 2Mines ParisTech, Centre for Computational Biology, 35 rue Saint-Honore, F-77305 Fontainebleau Cedex, France, 3Institut Curie, 4INSERM, U900, F-75248, Paris, France, 5Ochanomizu University, Center for Informational Biology, 2-1-1 Ohtsuka, Bunkyo-ku, Tokyo 112-8610, 6Tokyo Institute of Technology, Department of Computer Science, 2-12-1, O-okayama, Meguro-ku, Tokyo 152-8552 and 7National Institute of Advanced Industrial Science and Technology, Computational Biology Research Center (AIST), 2-42 Aomi, Koto-ku, Tokyo 135-0064, Japan"],"affiliations":[{"raw_affiliation_string":"1 IBM Research, Tokyo Research Laboratory, 1623-14 Shimo-tsuruma, Yamato, Kanagawa, 242-8502 Japan, 2Mines ParisTech, Centre for Computational Biology, 35 rue Saint-Honore, F-77305 Fontainebleau Cedex, France, 3Institut Curie, 4INSERM, U900, F-75248, Paris, France, 5Ochanomizu University, Center for Informational Biology, 2-1-1 Ohtsuka, Bunkyo-ku, Tokyo 112-8610, 6Tokyo Institute of Technology, Department of Computer Science, 2-12-1, O-okayama, Meguro-ku, Tokyo 152-8552 and 7National Institute of Advanced Industrial Science and Technology, Computational Biology Research Center (AIST), 2-42 Aomi, Koto-ku, Tokyo 135-0064, Japan","institution_ids":["https://openalex.org/I70768539","https://openalex.org/I80043","https://openalex.org/I4210145865","https://openalex.org/I26120043","https://openalex.org/I73613424","https://openalex.org/I154526488"]}]}],"institutions":[],"countries_distinct_count":2,"institutions_distinct_count":5,"corresponding_author_ids":["https://openalex.org/A5102905217"],"corresponding_institution_ids":["https://openalex.org/I154526488","https://openalex.org/I26120043","https://openalex.org/I4210145865","https://openalex.org/I70768539","https://openalex.org/I73613424","https://openalex.org/I80043"],"apc_list":{"value":3618,"currency":"USD","value_usd":3618},"apc_paid":null,"fwci":1.5366,"has_fulltext":true,"cited_by_count":51,"citation_normalized_percentile":{"value":0.84719912,"is_in_top_1_percent":false,"is_in_top_10_percent":false},"cited_by_percentile_year":{"min":89,"max":100},"biblio":{"volume":"25","issue":"22","first_page":"2962","last_page":"2968"},"is_retracted":false,"is_paratext":false,"is_xpac":false,"primary_topic":{"id":"https://openalex.org/T10012","display_name":"Genetic diversity and population structure","score":0.9973000288009644,"subfield":{"id":"https://openalex.org/subfields/1311","display_name":"Genetics"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},"topics":[{"id":"https://openalex.org/T10012","display_name":"Genetic diversity and population structure","score":0.9973000288009644,"subfield":{"id":"https://openalex.org/subfields/1311","display_name":"Genetics"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},{"id":"https://openalex.org/T10015","display_name":"Genomics and Phylogenetic Studies","score":0.9965000152587891,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},{"id":"https://openalex.org/T10887","display_name":"Bioinformatics and Genomic Networks","score":0.9886999726295471,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}}],"keywords":[{"id":"https://openalex.org/keywords/inference","display_name":"Inference","score":0.7279123067855835},{"id":"https://openalex.org/keywords/pairwise-comparison","display_name":"Pairwise comparison","score":0.663657009601593},{"id":"https://openalex.org/keywords/computer-science","display_name":"Computer science","score":0.6362773776054382},{"id":"https://openalex.org/keywords/artificial-intelligence","display_name":"Artificial intelligence","score":0.505908191204071},{"id":"https://openalex.org/keywords/machine-learning","display_name":"Machine learning","score":0.47544312477111816},{"id":"https://openalex.org/keywords/genome","display_name":"Genome","score":0.4751853048801422},{"id":"https://openalex.org/keywords/computational-biology","display_name":"Computational biology","score":0.419277548789978},{"id":"https://openalex.org/keywords/biological-network","display_name":"Biological network","score":0.4151357114315033},{"id":"https://openalex.org/keywords/genomics","display_name":"Genomics","score":0.4135245680809021},{"id":"https://openalex.org/keywords/data-mining","display_name":"Data mining","score":0.34751462936401367},{"id":"https://openalex.org/keywords/biology","display_name":"Biology","score":0.3370369076728821},{"id":"https://openalex.org/keywords/gene","display_name":"Gene","score":0.2573332190513611},{"id":"https://openalex.org/keywords/genetics","display_name":"Genetics","score":0.1438991129398346}],"concepts":[{"id":"https://openalex.org/C2776214188","wikidata":"https://www.wikidata.org/wiki/Q408386","display_name":"Inference","level":2,"score":0.7279123067855835},{"id":"https://openalex.org/C184898388","wikidata":"https://www.wikidata.org/wiki/Q1435712","display_name":"Pairwise comparison","level":2,"score":0.663657009601593},{"id":"https://openalex.org/C41008148","wikidata":"https://www.wikidata.org/wiki/Q21198","display_name":"Computer science","level":0,"score":0.6362773776054382},{"id":"https://openalex.org/C154945302","wikidata":"https://www.wikidata.org/wiki/Q11660","display_name":"Artificial intelligence","level":1,"score":0.505908191204071},{"id":"https://openalex.org/C119857082","wikidata":"https://www.wikidata.org/wiki/Q2539","display_name":"Machine learning","level":1,"score":0.47544312477111816},{"id":"https://openalex.org/C141231307","wikidata":"https://www.wikidata.org/wiki/Q7020","display_name":"Genome","level":3,"score":0.4751853048801422},{"id":"https://openalex.org/C70721500","wikidata":"https://www.wikidata.org/wiki/Q177005","display_name":"Computational biology","level":1,"score":0.419277548789978},{"id":"https://openalex.org/C28225019","wikidata":"https://www.wikidata.org/wiki/Q4915005","display_name":"Biological network","level":2,"score":0.4151357114315033},{"id":"https://openalex.org/C189206191","wikidata":"https://www.wikidata.org/wiki/Q222046","display_name":"Genomics","level":4,"score":0.4135245680809021},{"id":"https://openalex.org/C124101348","wikidata":"https://www.wikidata.org/wiki/Q172491","display_name":"Data mining","level":1,"score":0.34751462936401367},{"id":"https://openalex.org/C86803240","wikidata":"https://www.wikidata.org/wiki/Q420","display_name":"Biology","level":0,"score":0.3370369076728821},{"id":"https://openalex.org/C104317684","wikidata":"https://www.wikidata.org/wiki/Q7187","display_name":"Gene","level":2,"score":0.2573332190513611},{"id":"https://openalex.org/C54355233","wikidata":"https://www.wikidata.org/wiki/Q7162","display_name":"Genetics","level":1,"score":0.1438991129398346}],"mesh":[{"descriptor_ui":"D000818","descriptor_name":"Animals","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D000818","descriptor_name":"Animals","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D000818","descriptor_name":"Animals","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D005075","descriptor_name":"Biological Evolution","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D005075","descriptor_name":"Biological Evolution","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D005075","descriptor_name":"Biological Evolution","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D012441","descriptor_name":"Saccharomyces cerevisiae","qualifier_ui":"Q000235","qualifier_name":"genetics","is_major_topic":false},{"descriptor_ui":"D012441","descriptor_name":"Saccharomyces cerevisiae","qualifier_ui":"Q000235","qualifier_name":"genetics","is_major_topic":false},{"descriptor_ui":"D012441","descriptor_name":"Saccharomyces cerevisiae","qualifier_ui":"Q000235","qualifier_name":"genetics","is_major_topic":false},{"descriptor_ui":"D016480","descriptor_name":"Helicobacter pylori","qualifier_ui":"Q000235","qualifier_name":"genetics","is_major_topic":false},{"descriptor_ui":"D016480","descriptor_name":"Helicobacter pylori","qualifier_ui":"Q000235","qualifier_name":"genetics","is_major_topic":false},{"descriptor_ui":"D016480","descriptor_name":"Helicobacter pylori","qualifier_ui":"Q000235","qualifier_name":"genetics","is_major_topic":false},{"descriptor_ui":"D016678","descriptor_name":"Genome","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D016678","descriptor_name":"Genome","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D016678","descriptor_name":"Genome","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D017173","descriptor_name":"Caenorhabditis elegans","qualifier_ui":"Q000235","qualifier_name":"genetics","is_major_topic":false},{"descriptor_ui":"D017173","descriptor_name":"Caenorhabditis elegans","qualifier_ui":"Q000235","qualifier_name":"genetics","is_major_topic":false},{"descriptor_ui":"D017173","descriptor_name":"Caenorhabditis elegans","qualifier_ui":"Q000235","qualifier_name":"genetics","is_major_topic":false},{"descriptor_ui":"D019295","descriptor_name":"Computational Biology","qualifier_ui":"Q000379","qualifier_name":"methods","is_major_topic":false},{"descriptor_ui":"D019295","descriptor_name":"Computational Biology","qualifier_ui":"Q000379","qualifier_name":"methods","is_major_topic":false},{"descriptor_ui":"D019295","descriptor_name":"Computational Biology","qualifier_ui":"Q000379","qualifier_name":"methods","is_major_topic":false},{"descriptor_ui":"D053263","descriptor_name":"Gene Regulatory Networks","qualifier_ui":"Q000235","qualifier_name":"genetics","is_major_topic":false},{"descriptor_ui":"D053263","descriptor_name":"Gene Regulatory Networks","qualifier_ui":"Q000235","qualifier_name":"genetics","is_major_topic":false},{"descriptor_ui":"D053263","descriptor_name":"Gene Regulatory Networks","qualifier_ui":"Q000235","qualifier_name":"genetics","is_major_topic":false},{"descriptor_ui":"D053858","descriptor_name":"Metabolic Networks and Pathways","qualifier_ui":"Q000235","qualifier_name":"genetics","is_major_topic":false},{"descriptor_ui":"D053858","descriptor_name":"Metabolic Networks and Pathways","qualifier_ui":"Q000235","qualifier_name":"genetics","is_major_topic":false},{"descriptor_ui":"D053858","descriptor_name":"Metabolic Networks and Pathways","qualifier_ui":"Q000235","qualifier_name":"genetics","is_major_topic":false}],"locations_count":3,"locations":[{"id":"doi:10.1093/bioinformatics/btp494","is_oa":true,"landing_page_url":"https://doi.org/10.1093/bioinformatics/btp494","pdf_url":"https://academic.oup.com/bioinformatics/article-pdf/25/22/2962/48998166/bioinformatics_25_22_2962.pdf","source":{"id":"https://openalex.org/S52395412","display_name":"Bioinformatics","issn_l":"1367-4803","issn":["1367-4803","1367-4811"],"is_oa":false,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310311648","host_organization_name":"Oxford University Press","host_organization_lineage":["https://openalex.org/P4310311648","https://openalex.org/P4310311647"],"host_organization_lineage_names":["Oxford University Press","University of Oxford"],"type":"journal"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Bioinformatics","raw_type":"journal-article"},{"id":"pmid:19689962","is_oa":false,"landing_page_url":"https://pubmed.ncbi.nlm.nih.gov/19689962","pdf_url":null,"source":{"id":"https://openalex.org/S4306525036","display_name":"PubMed","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I1299303238","host_organization_name":"National Institutes of Health","host_organization_lineage":["https://openalex.org/I1299303238"],"host_organization_lineage_names":[],"type":"repository"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Bioinformatics (Oxford, England)","raw_type":null},{"id":"pmh:oai:t2r2.star.titech.ac.jp:50078074","is_oa":false,"landing_page_url":"http://t2r2.star.titech.ac.jp/cgi-bin/publicationinfo.cgi?q_publication_content_number=CTT100588655","pdf_url":null,"source":{"id":"https://openalex.org/S4377196385","display_name":"Tokyo Tech Research Repository (Tokyo Institute of Technology)","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I114531698","host_organization_name":"Tokyo Institute of Technology","host_organization_lineage":["https://openalex.org/I114531698"],"host_organization_lineage_names":[],"type":"repository"},"license":null,"license_id":null,"version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":"","raw_type":"Journal Article"}],"best_oa_location":{"id":"doi:10.1093/bioinformatics/btp494","is_oa":true,"landing_page_url":"https://doi.org/10.1093/bioinformatics/btp494","pdf_url":"https://academic.oup.com/bioinformatics/article-pdf/25/22/2962/48998166/bioinformatics_25_22_2962.pdf","source":{"id":"https://openalex.org/S52395412","display_name":"Bioinformatics","issn_l":"1367-4803","issn":["1367-4803","1367-4811"],"is_oa":false,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310311648","host_organization_name":"Oxford University Press","host_organization_lineage":["https://openalex.org/P4310311648","https://openalex.org/P4310311647"],"host_organization_lineage_names":["Oxford University Press","University of Oxford"],"type":"journal"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Bioinformatics","raw_type":"journal-article"},"sustainable_development_goals":[],"awards":[],"funders":[],"has_content":{"pdf":true,"grobid_xml":true},"content_urls":{"pdf":"https://content.openalex.org/works/W2138776954.pdf","grobid_xml":"https://content.openalex.org/works/W2138776954.grobid-xml"},"referenced_works_count":59,"referenced_works":["https://openalex.org/W1514337951","https://openalex.org/W1604792744","https://openalex.org/W1663973292","https://openalex.org/W1866372755","https://openalex.org/W1981745143","https://openalex.org/W1994108141","https://openalex.org/W1995117714","https://openalex.org/W1999908247","https://openalex.org/W2009086942","https://openalex.org/W2012771329","https://openalex.org/W2030811942","https://openalex.org/W2057885377","https://openalex.org/W2079818352","https://openalex.org/W2084787613","https://openalex.org/W2087064593","https://openalex.org/W2099862356","https://openalex.org/W2100672820","https://openalex.org/W2108153239","https://openalex.org/W2111031006","https://openalex.org/W2111811203","https://openalex.org/W2115062943","https://openalex.org/W2116504907","https://openalex.org/W2123060905","https://openalex.org/W2124463526","https://openalex.org/W2124649441","https://openalex.org/W2128817214","https://openalex.org/W2133075481","https://openalex.org/W2133579817","https://openalex.org/W2135738422","https://openalex.org/W2138312771","https://openalex.org/W2139823104","https://openalex.org/W2145046271","https://openalex.org/W2146382443","https://openalex.org/W2153577994","https://openalex.org/W2153838454","https://openalex.org/W2154455818","https://openalex.org/W2159944419","https://openalex.org/W2161201865","https://openalex.org/W2161622353","https://openalex.org/W2162142896","https://openalex.org/W2162422091","https://openalex.org/W2162632348","https://openalex.org/W2167139431","https://openalex.org/W2178090165","https://openalex.org/W2560674852","https://openalex.org/W2595697910","https://openalex.org/W2597289420","https://openalex.org/W2612972698","https://openalex.org/W2786653492","https://openalex.org/W2798909945","https://openalex.org/W2911640577","https://openalex.org/W4252706339","https://openalex.org/W6638852427","https://openalex.org/W6667933915","https://openalex.org/W6676614600","https://openalex.org/W6676987060","https://openalex.org/W6680434193","https://openalex.org/W6680570197","https://openalex.org/W6682494755"],"related_works":["https://openalex.org/W2521866209","https://openalex.org/W3023271652","https://openalex.org/W2101115907","https://openalex.org/W119390381","https://openalex.org/W1976142521","https://openalex.org/W3175249469","https://openalex.org/W4383032973","https://openalex.org/W200033652","https://openalex.org/W2752421690","https://openalex.org/W2074110893"],"abstract_inverted_index":{"The":[0],"software":[1],"and":[2],"data":[3],"are":[4],"available":[5],"at":[6],"http://cbio.ensmp.fr/~yyamanishi/LinkPropagation/.":[7]},"counts_by_year":[{"year":2021,"cited_by_count":2},{"year":2020,"cited_by_count":26},{"year":2018,"cited_by_count":2},{"year":2017,"cited_by_count":2},{"year":2016,"cited_by_count":3},{"year":2015,"cited_by_count":2},{"year":2014,"cited_by_count":4},{"year":2013,"cited_by_count":1},{"year":2012,"cited_by_count":1}],"updated_date":"2026-04-04T16:13:02.066488","created_date":"2025-10-10T00:00:00"}
