{"id":"https://openalex.org/W2161043701","doi":"https://doi.org/10.1093/bioinformatics/btp481","title":"Partition function and base pairing probabilities for RNA\u2013RNA interaction prediction","display_name":"Partition function and base pairing probabilities for RNA\u2013RNA interaction prediction","publication_year":2009,"publication_date":"2009-08-11","ids":{"openalex":"https://openalex.org/W2161043701","doi":"https://doi.org/10.1093/bioinformatics/btp481","mag":"2161043701","pmid":"https://pubmed.ncbi.nlm.nih.gov/19671692"},"language":"en","primary_location":{"id":"doi:10.1093/bioinformatics/btp481","is_oa":true,"landing_page_url":"https://doi.org/10.1093/bioinformatics/btp481","pdf_url":"https://academic.oup.com/bioinformatics/article-pdf/25/20/2646/48995537/bioinformatics_25_20_2646.pdf","source":{"id":"https://openalex.org/S52395412","display_name":"Bioinformatics","issn_l":"1367-4803","issn":["1367-4803","1367-4811"],"is_oa":false,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310311648","host_organization_name":"Oxford University Press","host_organization_lineage":["https://openalex.org/P4310311648","https://openalex.org/P4310311647"],"host_organization_lineage_names":["Oxford University Press","University of Oxford"],"type":"journal"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Bioinformatics","raw_type":"journal-article"},"type":"article","indexed_in":["crossref","doaj","pubmed"],"open_access":{"is_oa":true,"oa_status":"bronze","oa_url":"https://academic.oup.com/bioinformatics/article-pdf/25/20/2646/48995537/bioinformatics_25_20_2646.pdf","any_repository_has_fulltext":false},"authorships":[{"author_position":"first","author":{"id":"https://openalex.org/A5059498893","display_name":"Fenix W. D. Huang","orcid":"https://orcid.org/0000-0003-3170-9461"},"institutions":[{"id":"https://openalex.org/I205237279","display_name":"Nankai University","ror":"https://ror.org/01y1kjr75","country_code":"CN","type":"education","lineage":["https://openalex.org/I205237279"]},{"id":"https://openalex.org/I4210091327","display_name":"Max Planck Institute for Mathematics in the Sciences","ror":"https://ror.org/00ez2he07","country_code":"DE","type":"facility","lineage":["https://openalex.org/I149899117","https://openalex.org/I4210091327"]}],"countries":["CN","DE"],"is_corresponding":true,"raw_author_name":"Fenix W. D. Huang","raw_affiliation_strings":["1 Center for Combinatorics, LPMC-TJKLC, 2 College of Life Science, Nankai University Tianjin 300071, P.R. China, 3 Bioinformatics Group, Department of Computer Science, and Interdisciplinary Center for Bioinformatics, University of Leipzig, H\u00e4rtelstrasse 16-18, D-04107 Leipzig, 4 Max Planck Institute for Mathematics in the Sciences, Inselstrasse 22, 5 RNomics Group, Fraunhofer Institut for Cell Therapy and Immunology, Perlickstra\u00dfe 1,D-04103 Leipzig, Germany, 6 Institute for Theoretical Chemistry, University of Vienna, W\u00e4hringerstrasse 17, A-1090 Vienna, Austria and 7 The Santa Fe Institute, 1399 Hyde Park Rd., Santa Fe, NM, USA"],"affiliations":[{"raw_affiliation_string":"1 Center for Combinatorics, LPMC-TJKLC, 2 College of Life Science, Nankai University Tianjin 300071, P.R. China, 3 Bioinformatics Group, Department of Computer Science, and Interdisciplinary Center for Bioinformatics, University of Leipzig, H\u00e4rtelstrasse 16-18, D-04107 Leipzig, 4 Max Planck Institute for Mathematics in the Sciences, Inselstrasse 22, 5 RNomics Group, Fraunhofer Institut for Cell Therapy and Immunology, Perlickstra\u00dfe 1,D-04103 Leipzig, Germany, 6 Institute for Theoretical Chemistry, University of Vienna, W\u00e4hringerstrasse 17, A-1090 Vienna, Austria and 7 The Santa Fe Institute, 1399 Hyde Park Rd., Santa Fe, NM, USA","institution_ids":["https://openalex.org/I205237279","https://openalex.org/I4210091327"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5089171871","display_name":"Jing Qin","orcid":"https://orcid.org/0000-0002-8302-0968"},"institutions":[{"id":"https://openalex.org/I4210091327","display_name":"Max Planck Institute for Mathematics in the Sciences","ror":"https://ror.org/00ez2he07","country_code":"DE","type":"facility","lineage":["https://openalex.org/I149899117","https://openalex.org/I4210091327"]},{"id":"https://openalex.org/I205237279","display_name":"Nankai University","ror":"https://ror.org/01y1kjr75","country_code":"CN","type":"education","lineage":["https://openalex.org/I205237279"]}],"countries":["CN","DE"],"is_corresponding":false,"raw_author_name":"Jing Qin","raw_affiliation_strings":["1 Center for Combinatorics, LPMC-TJKLC, 2 College of Life Science, Nankai University Tianjin 300071, P.R. China, 3 Bioinformatics Group, Department of Computer Science, and Interdisciplinary Center for Bioinformatics, University of Leipzig, H\u00e4rtelstrasse 16-18, D-04107 Leipzig, 4 Max Planck Institute for Mathematics in the Sciences, Inselstrasse 22, 5 RNomics Group, Fraunhofer Institut for Cell Therapy and Immunology, Perlickstra\u00dfe 1,D-04103 Leipzig, Germany, 6 Institute for Theoretical Chemistry, University of Vienna, W\u00e4hringerstrasse 17, A-1090 Vienna, Austria and 7 The Santa Fe Institute, 1399 Hyde Park Rd., Santa Fe, NM, USA"],"affiliations":[{"raw_affiliation_string":"1 Center for Combinatorics, LPMC-TJKLC, 2 College of Life Science, Nankai University Tianjin 300071, P.R. China, 3 Bioinformatics Group, Department of Computer Science, and Interdisciplinary Center for Bioinformatics, University of Leipzig, H\u00e4rtelstrasse 16-18, D-04107 Leipzig, 4 Max Planck Institute for Mathematics in the Sciences, Inselstrasse 22, 5 RNomics Group, Fraunhofer Institut for Cell Therapy and Immunology, Perlickstra\u00dfe 1,D-04103 Leipzig, Germany, 6 Institute for Theoretical Chemistry, University of Vienna, W\u00e4hringerstrasse 17, A-1090 Vienna, Austria and 7 The Santa Fe Institute, 1399 Hyde Park Rd., Santa Fe, NM, USA","institution_ids":["https://openalex.org/I205237279","https://openalex.org/I4210091327"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5053661506","display_name":"Christian M. Reidys","orcid":"https://orcid.org/0000-0002-6349-4998"},"institutions":[{"id":"https://openalex.org/I4210091327","display_name":"Max Planck Institute for Mathematics in the Sciences","ror":"https://ror.org/00ez2he07","country_code":"DE","type":"facility","lineage":["https://openalex.org/I149899117","https://openalex.org/I4210091327"]},{"id":"https://openalex.org/I205237279","display_name":"Nankai University","ror":"https://ror.org/01y1kjr75","country_code":"CN","type":"education","lineage":["https://openalex.org/I205237279"]}],"countries":["CN","DE"],"is_corresponding":false,"raw_author_name":"Christian M. Reidys","raw_affiliation_strings":["1 Center for Combinatorics, LPMC-TJKLC, 2 College of Life Science, Nankai University Tianjin 300071, P.R. China, 3 Bioinformatics Group, Department of Computer Science, and Interdisciplinary Center for Bioinformatics, University of Leipzig, H\u00e4rtelstrasse 16-18, D-04107 Leipzig, 4 Max Planck Institute for Mathematics in the Sciences, Inselstrasse 22, 5 RNomics Group, Fraunhofer Institut for Cell Therapy and Immunology, Perlickstra\u00dfe 1,D-04103 Leipzig, Germany, 6 Institute for Theoretical Chemistry, University of Vienna, W\u00e4hringerstrasse 17, A-1090 Vienna, Austria and 7 The Santa Fe Institute, 1399 Hyde Park Rd., Santa Fe, NM, USA"],"affiliations":[{"raw_affiliation_string":"1 Center for Combinatorics, LPMC-TJKLC, 2 College of Life Science, Nankai University Tianjin 300071, P.R. China, 3 Bioinformatics Group, Department of Computer Science, and Interdisciplinary Center for Bioinformatics, University of Leipzig, H\u00e4rtelstrasse 16-18, D-04107 Leipzig, 4 Max Planck Institute for Mathematics in the Sciences, Inselstrasse 22, 5 RNomics Group, Fraunhofer Institut for Cell Therapy and Immunology, Perlickstra\u00dfe 1,D-04103 Leipzig, Germany, 6 Institute for Theoretical Chemistry, University of Vienna, W\u00e4hringerstrasse 17, A-1090 Vienna, Austria and 7 The Santa Fe Institute, 1399 Hyde Park Rd., Santa Fe, NM, USA","institution_ids":["https://openalex.org/I205237279","https://openalex.org/I4210091327"]}]},{"author_position":"last","author":{"id":"https://openalex.org/A5016104736","display_name":"Peter F. Stadler","orcid":"https://orcid.org/0000-0002-5016-5191"},"institutions":[{"id":"https://openalex.org/I4210091327","display_name":"Max Planck Institute for Mathematics in the Sciences","ror":"https://ror.org/00ez2he07","country_code":"DE","type":"facility","lineage":["https://openalex.org/I149899117","https://openalex.org/I4210091327"]},{"id":"https://openalex.org/I205237279","display_name":"Nankai University","ror":"https://ror.org/01y1kjr75","country_code":"CN","type":"education","lineage":["https://openalex.org/I205237279"]}],"countries":["CN","DE"],"is_corresponding":false,"raw_author_name":"Peter F. Stadler","raw_affiliation_strings":["1 Center for Combinatorics, LPMC-TJKLC, 2 College of Life Science, Nankai University Tianjin 300071, P.R. China, 3 Bioinformatics Group, Department of Computer Science, and Interdisciplinary Center for Bioinformatics, University of Leipzig, H\u00e4rtelstrasse 16-18, D-04107 Leipzig, 4 Max Planck Institute for Mathematics in the Sciences, Inselstrasse 22, 5 RNomics Group, Fraunhofer Institut for Cell Therapy and Immunology, Perlickstra\u00dfe 1,D-04103 Leipzig, Germany, 6 Institute for Theoretical Chemistry, University of Vienna, W\u00e4hringerstrasse 17, A-1090 Vienna, Austria and 7 The Santa Fe Institute, 1399 Hyde Park Rd., Santa Fe, NM, USA"],"affiliations":[{"raw_affiliation_string":"1 Center for Combinatorics, LPMC-TJKLC, 2 College of Life Science, Nankai University Tianjin 300071, P.R. China, 3 Bioinformatics Group, Department of Computer Science, and Interdisciplinary Center for Bioinformatics, University of Leipzig, H\u00e4rtelstrasse 16-18, D-04107 Leipzig, 4 Max Planck Institute for Mathematics in the Sciences, Inselstrasse 22, 5 RNomics Group, Fraunhofer Institut for Cell Therapy and Immunology, Perlickstra\u00dfe 1,D-04103 Leipzig, Germany, 6 Institute for Theoretical Chemistry, University of Vienna, W\u00e4hringerstrasse 17, A-1090 Vienna, Austria and 7 The Santa Fe Institute, 1399 Hyde Park Rd., Santa Fe, NM, USA","institution_ids":["https://openalex.org/I205237279","https://openalex.org/I4210091327"]}]}],"institutions":[],"countries_distinct_count":2,"institutions_distinct_count":4,"corresponding_author_ids":["https://openalex.org/A5059498893"],"corresponding_institution_ids":["https://openalex.org/I205237279","https://openalex.org/I4210091327"],"apc_list":{"value":3618,"currency":"USD","value_usd":3618},"apc_paid":null,"fwci":4.0435,"has_fulltext":false,"cited_by_count":84,"citation_normalized_percentile":{"value":0.9465033,"is_in_top_1_percent":false,"is_in_top_10_percent":true},"cited_by_percentile_year":{"min":89,"max":100},"biblio":{"volume":"25","issue":"20","first_page":"2646","last_page":"2654"},"is_retracted":false,"is_paratext":false,"is_xpac":false,"primary_topic":{"id":"https://openalex.org/T10521","display_name":"RNA and protein synthesis mechanisms","score":1.0,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},"topics":[{"id":"https://openalex.org/T10521","display_name":"RNA and protein synthesis mechanisms","score":1.0,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},{"id":"https://openalex.org/T10604","display_name":"RNA Research and Splicing","score":0.9987999796867371,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},{"id":"https://openalex.org/T11482","display_name":"RNA modifications and cancer","score":0.9980000257492065,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}}],"keywords":[{"id":"https://openalex.org/keywords/rna","display_name":"RNA","score":0.6608840227127075},{"id":"https://openalex.org/keywords/computer-science","display_name":"Computer science","score":0.5843915939331055},{"id":"https://openalex.org/keywords/partition-function","display_name":"Partition function (quantum field theory)","score":0.5031914114952087},{"id":"https://openalex.org/keywords/nucleic-acid-secondary-structure","display_name":"Nucleic acid secondary structure","score":0.46737900376319885},{"id":"https://openalex.org/keywords/theoretical-computer-science","display_name":"Theoretical computer science","score":0.45425912737846375},{"id":"https://openalex.org/keywords/pseudoknot","display_name":"Pseudoknot","score":0.4422942101955414},{"id":"https://openalex.org/keywords/folding","display_name":"Folding (DSP implementation)","score":0.4295431673526764},{"id":"https://openalex.org/keywords/base-pair","display_name":"Base pair","score":0.42422887682914734},{"id":"https://openalex.org/keywords/time-complexity","display_name":"Time complexity","score":0.42332392930984497},{"id":"https://openalex.org/keywords/algorithm","display_name":"Algorithm","score":0.3887079954147339},{"id":"https://openalex.org/keywords/computational-biology","display_name":"Computational biology","score":0.35075533390045166},{"id":"https://openalex.org/keywords/physics","display_name":"Physics","score":0.18862667679786682},{"id":"https://openalex.org/keywords/biology","display_name":"Biology","score":0.14557000994682312},{"id":"https://openalex.org/keywords/genetics","display_name":"Genetics","score":0.11814650893211365}],"concepts":[{"id":"https://openalex.org/C67705224","wikidata":"https://www.wikidata.org/wiki/Q11053","display_name":"RNA","level":3,"score":0.6608840227127075},{"id":"https://openalex.org/C41008148","wikidata":"https://www.wikidata.org/wiki/Q21198","display_name":"Computer science","level":0,"score":0.5843915939331055},{"id":"https://openalex.org/C2778401447","wikidata":"https://www.wikidata.org/wiki/Q7140637","display_name":"Partition function (quantum field theory)","level":2,"score":0.5031914114952087},{"id":"https://openalex.org/C85468374","wikidata":"https://www.wikidata.org/wiki/Q6589957","display_name":"Nucleic acid secondary structure","level":4,"score":0.46737900376319885},{"id":"https://openalex.org/C80444323","wikidata":"https://www.wikidata.org/wiki/Q2878974","display_name":"Theoretical computer science","level":1,"score":0.45425912737846375},{"id":"https://openalex.org/C105130999","wikidata":"https://www.wikidata.org/wiki/Q414976","display_name":"Pseudoknot","level":4,"score":0.4422942101955414},{"id":"https://openalex.org/C2776545253","wikidata":"https://www.wikidata.org/wiki/Q5464292","display_name":"Folding (DSP implementation)","level":2,"score":0.4295431673526764},{"id":"https://openalex.org/C185581394","wikidata":"https://www.wikidata.org/wiki/Q145911","display_name":"Base pair","level":3,"score":0.42422887682914734},{"id":"https://openalex.org/C311688","wikidata":"https://www.wikidata.org/wiki/Q2393193","display_name":"Time complexity","level":2,"score":0.42332392930984497},{"id":"https://openalex.org/C11413529","wikidata":"https://www.wikidata.org/wiki/Q8366","display_name":"Algorithm","level":1,"score":0.3887079954147339},{"id":"https://openalex.org/C70721500","wikidata":"https://www.wikidata.org/wiki/Q177005","display_name":"Computational biology","level":1,"score":0.35075533390045166},{"id":"https://openalex.org/C121332964","wikidata":"https://www.wikidata.org/wiki/Q413","display_name":"Physics","level":0,"score":0.18862667679786682},{"id":"https://openalex.org/C86803240","wikidata":"https://www.wikidata.org/wiki/Q420","display_name":"Biology","level":0,"score":0.14557000994682312},{"id":"https://openalex.org/C54355233","wikidata":"https://www.wikidata.org/wiki/Q7162","display_name":"Genetics","level":1,"score":0.11814650893211365},{"id":"https://openalex.org/C552990157","wikidata":"https://www.wikidata.org/wiki/Q7430","display_name":"DNA","level":2,"score":0.0},{"id":"https://openalex.org/C104317684","wikidata":"https://www.wikidata.org/wiki/Q7187","display_name":"Gene","level":2,"score":0.0},{"id":"https://openalex.org/C62520636","wikidata":"https://www.wikidata.org/wiki/Q944","display_name":"Quantum mechanics","level":1,"score":0.0},{"id":"https://openalex.org/C127413603","wikidata":"https://www.wikidata.org/wiki/Q11023","display_name":"Engineering","level":0,"score":0.0},{"id":"https://openalex.org/C119599485","wikidata":"https://www.wikidata.org/wiki/Q43035","display_name":"Electrical engineering","level":1,"score":0.0}],"mesh":[{"descriptor_ui":"D000465","descriptor_name":"Algorithms","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D000465","descriptor_name":"Algorithms","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D000465","descriptor_name":"Algorithms","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D009690","descriptor_name":"Nucleic Acid Conformation","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D009690","descriptor_name":"Nucleic Acid Conformation","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D009690","descriptor_name":"Nucleic Acid Conformation","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D012313","descriptor_name":"RNA","qualifier_ui":"Q000378","qualifier_name":"metabolism","is_major_topic":false},{"descriptor_ui":"D012313","descriptor_name":"RNA","qualifier_ui":"Q000378","qualifier_name":"metabolism","is_major_topic":false},{"descriptor_ui":"D012313","descriptor_name":"RNA","qualifier_ui":"Q000378","qualifier_name":"metabolism","is_major_topic":false},{"descriptor_ui":"D012313","descriptor_name":"RNA","qualifier_ui":"Q000737","qualifier_name":"chemistry","is_major_topic":false},{"descriptor_ui":"D012313","descriptor_name":"RNA","qualifier_ui":"Q000737","qualifier_name":"chemistry","is_major_topic":false},{"descriptor_ui":"D012313","descriptor_name":"RNA","qualifier_ui":"Q000737","qualifier_name":"chemistry","is_major_topic":false},{"descriptor_ui":"D013816","descriptor_name":"Thermodynamics","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D013816","descriptor_name":"Thermodynamics","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D013816","descriptor_name":"Thermodynamics","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D019295","descriptor_name":"Computational Biology","qualifier_ui":"Q000379","qualifier_name":"methods","is_major_topic":false},{"descriptor_ui":"D019295","descriptor_name":"Computational Biology","qualifier_ui":"Q000379","qualifier_name":"methods","is_major_topic":false},{"descriptor_ui":"D019295","descriptor_name":"Computational Biology","qualifier_ui":"Q000379","qualifier_name":"methods","is_major_topic":false},{"descriptor_ui":"D020029","descriptor_name":"Base Pairing","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D020029","descriptor_name":"Base Pairing","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D020029","descriptor_name":"Base Pairing","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D030541","descriptor_name":"Databases, Genetic","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D030541","descriptor_name":"Databases, Genetic","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D030541","descriptor_name":"Databases, Genetic","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false}],"locations_count":5,"locations":[{"id":"doi:10.1093/bioinformatics/btp481","is_oa":true,"landing_page_url":"https://doi.org/10.1093/bioinformatics/btp481","pdf_url":"https://academic.oup.com/bioinformatics/article-pdf/25/20/2646/48995537/bioinformatics_25_20_2646.pdf","source":{"id":"https://openalex.org/S52395412","display_name":"Bioinformatics","issn_l":"1367-4803","issn":["1367-4803","1367-4811"],"is_oa":false,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310311648","host_organization_name":"Oxford University Press","host_organization_lineage":["https://openalex.org/P4310311648","https://openalex.org/P4310311647"],"host_organization_lineage_names":["Oxford University Press","University of Oxford"],"type":"journal"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Bioinformatics","raw_type":"journal-article"},{"id":"pmid:19671692","is_oa":false,"landing_page_url":"https://pubmed.ncbi.nlm.nih.gov/19671692","pdf_url":null,"source":{"id":"https://openalex.org/S4306525036","display_name":"PubMed","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I1299303238","host_organization_name":"National Institutes of Health","host_organization_lineage":["https://openalex.org/I1299303238"],"host_organization_lineage_names":[],"type":"repository"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Bioinformatics (Oxford, England)","raw_type":null},{"id":"pmh:oai:CiteSeerX.psu:10.1.1.992.9450","is_oa":false,"landing_page_url":"http://citeseerx.ist.psu.edu/viewdoc/summary?doi=10.1.1.992.9450","pdf_url":null,"source":null,"license":null,"license_id":null,"version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":"http://bioinformatics.oxfordjournals.org/content/early/2009/08/11/bioinformatics.btp481.full.pdf","raw_type":"text"},{"id":"pmh:oai:fraunhofer.de:N-111472","is_oa":false,"landing_page_url":"http://publica.fraunhofer.de/documents/N-111472.html","pdf_url":null,"source":{"id":"https://openalex.org/S4306400801","display_name":"Publikationsdatenbank der Fraunhofer-Gesellschaft (Fraunhofer-Gesellschaft)","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I4923324","host_organization_name":"Fraunhofer-Gesellschaft","host_organization_lineage":["https://openalex.org/I4923324"],"host_organization_lineage_names":[],"type":"repository"},"license":null,"license_id":null,"version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":"Fraunhofer IZI","raw_type":"Journal Article"},{"id":"pmh:oai:publica.fraunhofer.de:publica/219709","is_oa":false,"landing_page_url":"https://publica.fraunhofer.de/handle/publica/219709","pdf_url":null,"source":{"id":"https://openalex.org/S4306400318","display_name":"Fraunhofer-Publica (Fraunhofer-Gesellschaft)","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I4923324","host_organization_name":"Fraunhofer-Gesellschaft","host_organization_lineage":["https://openalex.org/I4923324"],"host_organization_lineage_names":[],"type":"repository"},"license":null,"license_id":null,"version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":null,"raw_type":"journal article"}],"best_oa_location":{"id":"doi:10.1093/bioinformatics/btp481","is_oa":true,"landing_page_url":"https://doi.org/10.1093/bioinformatics/btp481","pdf_url":"https://academic.oup.com/bioinformatics/article-pdf/25/20/2646/48995537/bioinformatics_25_20_2646.pdf","source":{"id":"https://openalex.org/S52395412","display_name":"Bioinformatics","issn_l":"1367-4803","issn":["1367-4803","1367-4811"],"is_oa":false,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310311648","host_organization_name":"Oxford University Press","host_organization_lineage":["https://openalex.org/P4310311648","https://openalex.org/P4310311647"],"host_organization_lineage_names":["Oxford University Press","University of Oxford"],"type":"journal"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Bioinformatics","raw_type":"journal-article"},"sustainable_development_goals":[],"awards":[],"funders":[],"has_content":{"pdf":true,"grobid_xml":true},"content_urls":{"pdf":"https://content.openalex.org/works/W2161043701.pdf","grobid_xml":"https://content.openalex.org/works/W2161043701.grobid-xml"},"referenced_works_count":54,"referenced_works":["https://openalex.org/W30210889","https://openalex.org/W1526440925","https://openalex.org/W1537127938","https://openalex.org/W1543796220","https://openalex.org/W1554360471","https://openalex.org/W1852693356","https://openalex.org/W1856831671","https://openalex.org/W1971883398","https://openalex.org/W1978873640","https://openalex.org/W1983815263","https://openalex.org/W1984675364","https://openalex.org/W1989263240","https://openalex.org/W2009818318","https://openalex.org/W2022916085","https://openalex.org/W2024799598","https://openalex.org/W2025763720","https://openalex.org/W2028102516","https://openalex.org/W2043653977","https://openalex.org/W2044545750","https://openalex.org/W2049745870","https://openalex.org/W2053783019","https://openalex.org/W2060535275","https://openalex.org/W2061637258","https://openalex.org/W2076301890","https://openalex.org/W2088784401","https://openalex.org/W2094253263","https://openalex.org/W2097513785","https://openalex.org/W2099306789","https://openalex.org/W2104141342","https://openalex.org/W2107235611","https://openalex.org/W2109297587","https://openalex.org/W2114094654","https://openalex.org/W2118490016","https://openalex.org/W2119340328","https://openalex.org/W2123241418","https://openalex.org/W2127068051","https://openalex.org/W2129706781","https://openalex.org/W2136659582","https://openalex.org/W2148599336","https://openalex.org/W2150882562","https://openalex.org/W2164700062","https://openalex.org/W2166268906","https://openalex.org/W2170472690","https://openalex.org/W2327253208","https://openalex.org/W2427045451","https://openalex.org/W2953076768","https://openalex.org/W6632079549","https://openalex.org/W6639217222","https://openalex.org/W6663359506","https://openalex.org/W6673894647","https://openalex.org/W6674583926","https://openalex.org/W6677398321","https://openalex.org/W6684319383","https://openalex.org/W6717482232"],"related_works":["https://openalex.org/W2159621058","https://openalex.org/W2591061273","https://openalex.org/W2122204372","https://openalex.org/W2792232401","https://openalex.org/W2472116704","https://openalex.org/W2036643266","https://openalex.org/W1999060916","https://openalex.org/W1583489351","https://openalex.org/W2280924737","https://openalex.org/W576226539"],"abstract_inverted_index":{"The":[0,7],"program":[1],"rip":[2],"is":[3,10],"implemented":[4],"in":[5],"C.":[6],"source":[8],"code":[9],"available":[11],"for":[12],"download":[13],"from":[14],"http://www.combinatorics.cn/cbpc/rip.html":[15],"and":[16],"http://www.bioinf.uni-leipzig.de/Software/rip.html.":[17]},"counts_by_year":[{"year":2026,"cited_by_count":1},{"year":2024,"cited_by_count":1},{"year":2023,"cited_by_count":2},{"year":2021,"cited_by_count":2},{"year":2020,"cited_by_count":1},{"year":2019,"cited_by_count":3},{"year":2018,"cited_by_count":9},{"year":2017,"cited_by_count":5},{"year":2016,"cited_by_count":5},{"year":2015,"cited_by_count":4},{"year":2014,"cited_by_count":7},{"year":2013,"cited_by_count":14},{"year":2012,"cited_by_count":10}],"updated_date":"2026-04-04T16:13:02.066488","created_date":"2025-10-10T00:00:00"}
