{"id":"https://openalex.org/W2132812398","doi":"https://doi.org/10.1093/bioinformatics/btp475","title":"PubMed-EX: a web browser extension to enhance PubMed search with text mining features","display_name":"PubMed-EX: a web browser extension to enhance PubMed search with text mining features","publication_year":2009,"publication_date":"2009-08-04","ids":{"openalex":"https://openalex.org/W2132812398","doi":"https://doi.org/10.1093/bioinformatics/btp475","mag":"2132812398","pmid":"https://pubmed.ncbi.nlm.nih.gov/19654114"},"language":"en","primary_location":{"id":"doi:10.1093/bioinformatics/btp475","is_oa":true,"landing_page_url":"https://doi.org/10.1093/bioinformatics/btp475","pdf_url":"https://academic.oup.com/bioinformatics/article-pdf/25/22/3031/16890059/btp475.pdf","source":{"id":"https://openalex.org/S52395412","display_name":"Bioinformatics","issn_l":"1367-4803","issn":["1367-4803","1367-4811"],"is_oa":false,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310311648","host_organization_name":"Oxford University Press","host_organization_lineage":["https://openalex.org/P4310311648","https://openalex.org/P4310311647"],"host_organization_lineage_names":["Oxford University Press","University of Oxford"],"type":"journal"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Bioinformatics","raw_type":"journal-article"},"type":"article","indexed_in":["crossref","doaj","pubmed"],"open_access":{"is_oa":true,"oa_status":"bronze","oa_url":"https://academic.oup.com/bioinformatics/article-pdf/25/22/3031/16890059/btp475.pdf","any_repository_has_fulltext":false},"authorships":[{"author_position":"first","author":{"id":"https://openalex.org/A5030771512","display_name":"Richard Tzong\u2010Han Tsai","orcid":"https://orcid.org/0000-0003-0513-107X"},"institutions":[{"id":"https://openalex.org/I25846049","display_name":"National Tsing Hua University","ror":"https://ror.org/00zdnkx70","country_code":"TW","type":"education","lineage":["https://openalex.org/I25846049"]}],"countries":["TW"],"is_corresponding":true,"raw_author_name":"Richard Tzong-Han Tsai","raw_affiliation_strings":["1 Department of Computer Science and Engineering, Yuan Ze University, Chung Li, 2Institute of Information Science, Academia Sinica, Nankang, Taipei and 3Department of Computer Science, National Tsing-Hua University, HsinChu, Taiwan, R.O.C"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"1 Department of Computer Science and Engineering, Yuan Ze University, Chung Li, 2Institute of Information Science, Academia Sinica, Nankang, Taipei and 3Department of Computer Science, National Tsing-Hua University, HsinChu, Taiwan, R.O.C","institution_ids":["https://openalex.org/I25846049"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5037362113","display_name":"Hong-Jie Dai","orcid":"https://orcid.org/0000-0002-1516-7255"},"institutions":[{"id":"https://openalex.org/I25846049","display_name":"National Tsing Hua University","ror":"https://ror.org/00zdnkx70","country_code":"TW","type":"education","lineage":["https://openalex.org/I25846049"]}],"countries":["TW"],"is_corresponding":false,"raw_author_name":"Hong-Jie Dai","raw_affiliation_strings":["1 Department of Computer Science and Engineering, Yuan Ze University, Chung Li, 2Institute of Information Science, Academia Sinica, Nankang, Taipei and 3Department of Computer Science, National Tsing-Hua University, HsinChu, Taiwan, R.O.C"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"1 Department of Computer Science and Engineering, Yuan Ze University, Chung Li, 2Institute of Information Science, Academia Sinica, Nankang, Taipei and 3Department of Computer Science, National Tsing-Hua University, HsinChu, Taiwan, R.O.C","institution_ids":["https://openalex.org/I25846049"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5016587469","display_name":"Po\u2010Ting Lai","orcid":"https://orcid.org/0000-0003-2025-318X"},"institutions":[{"id":"https://openalex.org/I25846049","display_name":"National Tsing Hua University","ror":"https://ror.org/00zdnkx70","country_code":"TW","type":"education","lineage":["https://openalex.org/I25846049"]}],"countries":["TW"],"is_corresponding":false,"raw_author_name":"Po-Ting Lai","raw_affiliation_strings":["1 Department of Computer Science and Engineering, Yuan Ze University, Chung Li, 2Institute of Information Science, Academia Sinica, Nankang, Taipei and 3Department of Computer Science, National Tsing-Hua University, HsinChu, Taiwan, R.O.C"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"1 Department of Computer Science and Engineering, Yuan Ze University, Chung Li, 2Institute of Information Science, Academia Sinica, Nankang, Taipei and 3Department of Computer Science, National Tsing-Hua University, HsinChu, Taiwan, R.O.C","institution_ids":["https://openalex.org/I25846049"]}]},{"author_position":"last","author":{"id":"https://openalex.org/A5062520277","display_name":"Chi\u2010Hsin Huang","orcid":"https://orcid.org/0000-0002-4048-9053"},"institutions":[{"id":"https://openalex.org/I25846049","display_name":"National Tsing Hua University","ror":"https://ror.org/00zdnkx70","country_code":"TW","type":"education","lineage":["https://openalex.org/I25846049"]}],"countries":["TW"],"is_corresponding":false,"raw_author_name":"Chi-Hsin Huang","raw_affiliation_strings":["1 Department of Computer Science and Engineering, Yuan Ze University, Chung Li, 2Institute of Information Science, Academia Sinica, Nankang, Taipei and 3Department of Computer Science, National Tsing-Hua University, HsinChu, Taiwan, R.O.C"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"1 Department of Computer Science and Engineering, Yuan Ze University, Chung Li, 2Institute of Information Science, Academia Sinica, Nankang, Taipei and 3Department of Computer Science, National Tsing-Hua University, HsinChu, Taiwan, R.O.C","institution_ids":["https://openalex.org/I25846049"]}]}],"institutions":[],"countries_distinct_count":1,"institutions_distinct_count":4,"corresponding_author_ids":["https://openalex.org/A5030771512"],"corresponding_institution_ids":["https://openalex.org/I25846049"],"apc_list":{"value":3618,"currency":"USD","value_usd":3618},"apc_paid":null,"fwci":1.2324,"has_fulltext":false,"cited_by_count":19,"citation_normalized_percentile":{"value":0.78920994,"is_in_top_1_percent":false,"is_in_top_10_percent":false},"cited_by_percentile_year":{"min":90,"max":97},"biblio":{"volume":"25","issue":"22","first_page":"3031","last_page":"3032"},"is_retracted":false,"is_paratext":false,"is_xpac":false,"primary_topic":{"id":"https://openalex.org/T11710","display_name":"Biomedical Text Mining and Ontologies","score":0.9998999834060669,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},"topics":[{"id":"https://openalex.org/T11710","display_name":"Biomedical Text Mining and Ontologies","score":0.9998999834060669,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},{"id":"https://openalex.org/T11642","display_name":"Genomics and Rare Diseases","score":0.9868000149726868,"subfield":{"id":"https://openalex.org/subfields/1311","display_name":"Genetics"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},{"id":"https://openalex.org/T13937","display_name":"Genetics, Bioinformatics, and Biomedical Research","score":0.9793000221252441,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}}],"keywords":[{"id":"https://openalex.org/keywords/computer-science","display_name":"Computer science","score":0.7310779094696045},{"id":"https://openalex.org/keywords/extension","display_name":"Extension (predicate logic)","score":0.5493813753128052},{"id":"https://openalex.org/keywords/information-retrieval","display_name":"Information retrieval","score":0.5287116169929504},{"id":"https://openalex.org/keywords/world-wide-web","display_name":"World Wide Web","score":0.5105220079421997},{"id":"https://openalex.org/keywords/categorization","display_name":"Categorization","score":0.4889196455478668},{"id":"https://openalex.org/keywords/key","display_name":"Key (lock)","score":0.45537978410720825},{"id":"https://openalex.org/keywords/relation","display_name":"Relation (database)","score":0.41042324900627136},{"id":"https://openalex.org/keywords/data-mining","display_name":"Data mining","score":0.1969132423400879},{"id":"https://openalex.org/keywords/artificial-intelligence","display_name":"Artificial intelligence","score":0.172194242477417},{"id":"https://openalex.org/keywords/programming-language","display_name":"Programming language","score":0.090573251247406}],"concepts":[{"id":"https://openalex.org/C41008148","wikidata":"https://www.wikidata.org/wiki/Q21198","display_name":"Computer science","level":0,"score":0.7310779094696045},{"id":"https://openalex.org/C2778029271","wikidata":"https://www.wikidata.org/wiki/Q5421931","display_name":"Extension (predicate logic)","level":2,"score":0.5493813753128052},{"id":"https://openalex.org/C23123220","wikidata":"https://www.wikidata.org/wiki/Q816826","display_name":"Information retrieval","level":1,"score":0.5287116169929504},{"id":"https://openalex.org/C136764020","wikidata":"https://www.wikidata.org/wiki/Q466","display_name":"World Wide Web","level":1,"score":0.5105220079421997},{"id":"https://openalex.org/C94124525","wikidata":"https://www.wikidata.org/wiki/Q912550","display_name":"Categorization","level":2,"score":0.4889196455478668},{"id":"https://openalex.org/C26517878","wikidata":"https://www.wikidata.org/wiki/Q228039","display_name":"Key (lock)","level":2,"score":0.45537978410720825},{"id":"https://openalex.org/C25343380","wikidata":"https://www.wikidata.org/wiki/Q277521","display_name":"Relation (database)","level":2,"score":0.41042324900627136},{"id":"https://openalex.org/C124101348","wikidata":"https://www.wikidata.org/wiki/Q172491","display_name":"Data mining","level":1,"score":0.1969132423400879},{"id":"https://openalex.org/C154945302","wikidata":"https://www.wikidata.org/wiki/Q11660","display_name":"Artificial intelligence","level":1,"score":0.172194242477417},{"id":"https://openalex.org/C199360897","wikidata":"https://www.wikidata.org/wiki/Q9143","display_name":"Programming language","level":1,"score":0.090573251247406},{"id":"https://openalex.org/C38652104","wikidata":"https://www.wikidata.org/wiki/Q3510521","display_name":"Computer security","level":1,"score":0.0}],"mesh":[{"descriptor_ui":"D012984","descriptor_name":"Software","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D012984","descriptor_name":"Software","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D012984","descriptor_name":"Software","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D014584","descriptor_name":"User-Computer Interface","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D014584","descriptor_name":"User-Computer Interface","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D014584","descriptor_name":"User-Computer Interface","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D016208","descriptor_name":"Databases, Factual","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D016208","descriptor_name":"Databases, Factual","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D016208","descriptor_name":"Databases, Factual","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D016247","descriptor_name":"Information Storage and Retrieval","qualifier_ui":"Q000379","qualifier_name":"methods","is_major_topic":false},{"descriptor_ui":"D016247","descriptor_name":"Information Storage and Retrieval","qualifier_ui":"Q000379","qualifier_name":"methods","is_major_topic":false},{"descriptor_ui":"D016247","descriptor_name":"Information Storage and Retrieval","qualifier_ui":"Q000379","qualifier_name":"methods","is_major_topic":false},{"descriptor_ui":"D019295","descriptor_name":"Computational Biology","qualifier_ui":"Q000379","qualifier_name":"methods","is_major_topic":false},{"descriptor_ui":"D019295","descriptor_name":"Computational Biology","qualifier_ui":"Q000379","qualifier_name":"methods","is_major_topic":false},{"descriptor_ui":"D019295","descriptor_name":"Computational Biology","qualifier_ui":"Q000379","qualifier_name":"methods","is_major_topic":false},{"descriptor_ui":"D020407","descriptor_name":"Internet","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D020407","descriptor_name":"Internet","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D020407","descriptor_name":"Internet","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D039781","descriptor_name":"PubMed","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D039781","descriptor_name":"PubMed","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D039781","descriptor_name":"PubMed","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D057225","descriptor_name":"Data Mining","qualifier_ui":"Q000379","qualifier_name":"methods","is_major_topic":false},{"descriptor_ui":"D057225","descriptor_name":"Data Mining","qualifier_ui":"Q000379","qualifier_name":"methods","is_major_topic":false},{"descriptor_ui":"D057225","descriptor_name":"Data Mining","qualifier_ui":"Q000379","qualifier_name":"methods","is_major_topic":false}],"locations_count":2,"locations":[{"id":"doi:10.1093/bioinformatics/btp475","is_oa":true,"landing_page_url":"https://doi.org/10.1093/bioinformatics/btp475","pdf_url":"https://academic.oup.com/bioinformatics/article-pdf/25/22/3031/16890059/btp475.pdf","source":{"id":"https://openalex.org/S52395412","display_name":"Bioinformatics","issn_l":"1367-4803","issn":["1367-4803","1367-4811"],"is_oa":false,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310311648","host_organization_name":"Oxford University Press","host_organization_lineage":["https://openalex.org/P4310311648","https://openalex.org/P4310311647"],"host_organization_lineage_names":["Oxford University Press","University of Oxford"],"type":"journal"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Bioinformatics","raw_type":"journal-article"},{"id":"pmid:19654114","is_oa":false,"landing_page_url":"https://pubmed.ncbi.nlm.nih.gov/19654114","pdf_url":null,"source":{"id":"https://openalex.org/S4306525036","display_name":"PubMed","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I1299303238","host_organization_name":"National Institutes of Health","host_organization_lineage":["https://openalex.org/I1299303238"],"host_organization_lineage_names":[],"type":"repository"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Bioinformatics (Oxford, England)","raw_type":null}],"best_oa_location":{"id":"doi:10.1093/bioinformatics/btp475","is_oa":true,"landing_page_url":"https://doi.org/10.1093/bioinformatics/btp475","pdf_url":"https://academic.oup.com/bioinformatics/article-pdf/25/22/3031/16890059/btp475.pdf","source":{"id":"https://openalex.org/S52395412","display_name":"Bioinformatics","issn_l":"1367-4803","issn":["1367-4803","1367-4811"],"is_oa":false,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310311648","host_organization_name":"Oxford University Press","host_organization_lineage":["https://openalex.org/P4310311648","https://openalex.org/P4310311647"],"host_organization_lineage_names":["Oxford University Press","University of Oxford"],"type":"journal"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Bioinformatics","raw_type":"journal-article"},"sustainable_development_goals":[],"awards":[],"funders":[],"has_content":{"grobid_xml":false,"pdf":false},"content_urls":null,"referenced_works_count":11,"referenced_works":["https://openalex.org/W2045016337","https://openalex.org/W2105114854","https://openalex.org/W2111726165","https://openalex.org/W2113202266","https://openalex.org/W2132784310","https://openalex.org/W2159640576","https://openalex.org/W2161299591","https://openalex.org/W3082398767","https://openalex.org/W4300022934","https://openalex.org/W6676155074","https://openalex.org/W6782436723"],"related_works":["https://openalex.org/W2165912799","https://openalex.org/W2735662278","https://openalex.org/W2382615723","https://openalex.org/W4311804456","https://openalex.org/W1987484445","https://openalex.org/W2623658258","https://openalex.org/W2143413548","https://openalex.org/W1969219540","https://openalex.org/W2370459448","https://openalex.org/W2105067402"],"abstract_inverted_index":{"Abstract":[0],"Summary:":[1],"PubMed-EX":[2,55],"is":[3,47,56],"a":[4],"browser":[5],"extension":[6],"that":[7],"marks":[8],"up":[9,51],"PubMed":[10],"search":[11],"results":[12],"with":[13],"additional":[14,40],"text-mining":[15],"information.":[16],"PubMed-EX's":[17],"page":[18],"mark-up,":[19,28],"which":[20],"includes":[21],"section":[22],"categorization":[23],"and":[24,26,38,61],"gene/disease":[25],"relation":[27],"can":[29],"help":[30],"researchers":[31],"to":[32],"quickly":[33],"focus":[34],"on":[35,42],"key":[36],"terms":[37],"provide":[39],"information":[41],"them.":[43],"All":[44],"text":[45],"processing":[46],"performed":[48],"server-side,":[49],"freeing":[50],"user":[52],"resources.":[53],"Availability:":[54],"freely":[57],"available":[58,70],"at":[59,71],"http://bws.iis.sinica.edu.tw/PubMed-EX":[60],"http://iisr.cse.yzu.edu.tw:8000/PubMed-EX/.":[62],"Contact:":[63],"thtsai@saturn.yzu.edu.tw":[64],"Supplementary":[65,67],"information:":[66],"data":[68],"are":[69],"Bioinformatics":[72],"online.":[73]},"counts_by_year":[{"year":2025,"cited_by_count":1},{"year":2023,"cited_by_count":1},{"year":2017,"cited_by_count":2},{"year":2015,"cited_by_count":3},{"year":2014,"cited_by_count":2},{"year":2013,"cited_by_count":1},{"year":2012,"cited_by_count":3}],"updated_date":"2026-06-23T06:36:01.041984","created_date":"2025-10-10T00:00:00"}
