{"id":"https://openalex.org/W2146405127","doi":"https://doi.org/10.1093/bioinformatics/btp461","title":"Mining gene functional networks to improve mass-spectrometry-based protein identification","display_name":"Mining gene functional networks to improve mass-spectrometry-based protein identification","publication_year":2009,"publication_date":"2009-07-24","ids":{"openalex":"https://openalex.org/W2146405127","doi":"https://doi.org/10.1093/bioinformatics/btp461","mag":"2146405127","pmid":"https://pubmed.ncbi.nlm.nih.gov/19633097"},"language":"en","primary_location":{"id":"doi:10.1093/bioinformatics/btp461","is_oa":true,"landing_page_url":"https://doi.org/10.1093/bioinformatics/btp461","pdf_url":"https://academic.oup.com/bioinformatics/article-pdf/25/22/2955/48997485/bioinformatics_25_22_2955.pdf","source":{"id":"https://openalex.org/S52395412","display_name":"Bioinformatics","issn_l":"1367-4803","issn":["1367-4803","1367-4811"],"is_oa":false,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310311648","host_organization_name":"Oxford University Press","host_organization_lineage":["https://openalex.org/P4310311648","https://openalex.org/P4310311647"],"host_organization_lineage_names":["Oxford University Press","University of Oxford"],"type":"journal"},"license":"cc-by-nc","license_id":"https://openalex.org/licenses/cc-by-nc","version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Bioinformatics","raw_type":"journal-article"},"type":"article","indexed_in":["crossref","doaj","pubmed"],"open_access":{"is_oa":true,"oa_status":"hybrid","oa_url":"https://academic.oup.com/bioinformatics/article-pdf/25/22/2955/48997485/bioinformatics_25_22_2955.pdf","any_repository_has_fulltext":true},"authorships":[{"author_position":"first","author":{"id":"https://openalex.org/A5112742948","display_name":"Smriti Ramakrishnan","orcid":null},"institutions":[{"id":"https://openalex.org/I86519309","display_name":"The University of Texas at Austin","ror":"https://ror.org/00hj54h04","country_code":"US","type":"education","lineage":["https://openalex.org/I86519309"]},{"id":"https://openalex.org/I165951966","display_name":"The University of Texas Health Science Center at San Antonio","ror":"https://ror.org/02f6dcw23","country_code":"US","type":"education","lineage":["https://openalex.org/I165951966"]}],"countries":["US"],"is_corresponding":true,"raw_author_name":"Smriti R. Ramakrishnan","raw_affiliation_strings":["1 Department of Computer Sciences, 1 University Station C0500, 2Department of Chemistry and Biochemistry & Institute for Cellular and Molecular Biology, Center for Systems and Synthetic Biology, 2500 Speedway, The University of Texas at Austin, Austin, TX 78712 and 3Children's Cancer Research Institute, The University of Texas Health Science Center at San Antonio, San Antonio, TX 78229, USA"],"affiliations":[{"raw_affiliation_string":"1 Department of Computer Sciences, 1 University Station C0500, 2Department of Chemistry and Biochemistry & Institute for Cellular and Molecular Biology, Center for Systems and Synthetic Biology, 2500 Speedway, The University of Texas at Austin, Austin, TX 78712 and 3Children's Cancer Research Institute, The University of Texas Health Science Center at San Antonio, San Antonio, TX 78229, USA","institution_ids":["https://openalex.org/I86519309","https://openalex.org/I165951966"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5035122021","display_name":"Christine Vogel","orcid":"https://orcid.org/0000-0002-2856-3118"},"institutions":[{"id":"https://openalex.org/I165951966","display_name":"The University of Texas Health Science Center at San Antonio","ror":"https://ror.org/02f6dcw23","country_code":"US","type":"education","lineage":["https://openalex.org/I165951966"]},{"id":"https://openalex.org/I86519309","display_name":"The University of Texas at Austin","ror":"https://ror.org/00hj54h04","country_code":"US","type":"education","lineage":["https://openalex.org/I86519309"]}],"countries":["US"],"is_corresponding":false,"raw_author_name":"Christine Vogel","raw_affiliation_strings":["1 Department of Computer Sciences, 1 University Station C0500, 2Department of Chemistry and Biochemistry & Institute for Cellular and Molecular Biology, Center for Systems and Synthetic Biology, 2500 Speedway, The University of Texas at Austin, Austin, TX 78712 and 3Children's Cancer Research Institute, The University of Texas Health Science Center at San Antonio, San Antonio, TX 78229, USA"],"affiliations":[{"raw_affiliation_string":"1 Department of Computer Sciences, 1 University Station C0500, 2Department of Chemistry and Biochemistry & Institute for Cellular and Molecular Biology, Center for Systems and Synthetic Biology, 2500 Speedway, The University of Texas at Austin, Austin, TX 78712 and 3Children's Cancer Research Institute, The University of Texas Health Science Center at San Antonio, San Antonio, TX 78229, USA","institution_ids":["https://openalex.org/I86519309","https://openalex.org/I165951966"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5075058925","display_name":"Taejoon Kwon","orcid":"https://orcid.org/0000-0002-9794-6112"},"institutions":[{"id":"https://openalex.org/I165951966","display_name":"The University of Texas Health Science Center at San Antonio","ror":"https://ror.org/02f6dcw23","country_code":"US","type":"education","lineage":["https://openalex.org/I165951966"]},{"id":"https://openalex.org/I86519309","display_name":"The University of Texas at Austin","ror":"https://ror.org/00hj54h04","country_code":"US","type":"education","lineage":["https://openalex.org/I86519309"]}],"countries":["US"],"is_corresponding":false,"raw_author_name":"Taejoon Kwon","raw_affiliation_strings":["1 Department of Computer Sciences, 1 University Station C0500, 2Department of Chemistry and Biochemistry & Institute for Cellular and Molecular Biology, Center for Systems and Synthetic Biology, 2500 Speedway, The University of Texas at Austin, Austin, TX 78712 and 3Children's Cancer Research Institute, The University of Texas Health Science Center at San Antonio, San Antonio, TX 78229, USA"],"affiliations":[{"raw_affiliation_string":"1 Department of Computer Sciences, 1 University Station C0500, 2Department of Chemistry and Biochemistry & Institute for Cellular and Molecular Biology, Center for Systems and Synthetic Biology, 2500 Speedway, The University of Texas at Austin, Austin, TX 78712 and 3Children's Cancer Research Institute, The University of Texas Health Science Center at San Antonio, San Antonio, TX 78229, USA","institution_ids":["https://openalex.org/I86519309","https://openalex.org/I165951966"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5042340056","display_name":"Luiz O. F. Penalva","orcid":"https://orcid.org/0000-0003-4491-6769"},"institutions":[{"id":"https://openalex.org/I165951966","display_name":"The University of Texas Health Science Center at San Antonio","ror":"https://ror.org/02f6dcw23","country_code":"US","type":"education","lineage":["https://openalex.org/I165951966"]},{"id":"https://openalex.org/I86519309","display_name":"The University of Texas at Austin","ror":"https://ror.org/00hj54h04","country_code":"US","type":"education","lineage":["https://openalex.org/I86519309"]}],"countries":["US"],"is_corresponding":false,"raw_author_name":"Luiz O. Penalva","raw_affiliation_strings":["1 Department of Computer Sciences, 1 University Station C0500, 2Department of Chemistry and Biochemistry & Institute for Cellular and Molecular Biology, Center for Systems and Synthetic Biology, 2500 Speedway, The University of Texas at Austin, Austin, TX 78712 and 3Children's Cancer Research Institute, The University of Texas Health Science Center at San Antonio, San Antonio, TX 78229, USA"],"affiliations":[{"raw_affiliation_string":"1 Department of Computer Sciences, 1 University Station C0500, 2Department of Chemistry and Biochemistry & Institute for Cellular and Molecular Biology, Center for Systems and Synthetic Biology, 2500 Speedway, The University of Texas at Austin, Austin, TX 78712 and 3Children's Cancer Research Institute, The University of Texas Health Science Center at San Antonio, San Antonio, TX 78229, USA","institution_ids":["https://openalex.org/I86519309","https://openalex.org/I165951966"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5079751395","display_name":"Edward M. Marcotte","orcid":"https://orcid.org/0000-0001-8808-180X"},"institutions":[{"id":"https://openalex.org/I165951966","display_name":"The University of Texas Health Science Center at San Antonio","ror":"https://ror.org/02f6dcw23","country_code":"US","type":"education","lineage":["https://openalex.org/I165951966"]},{"id":"https://openalex.org/I86519309","display_name":"The University of Texas at Austin","ror":"https://ror.org/00hj54h04","country_code":"US","type":"education","lineage":["https://openalex.org/I86519309"]}],"countries":["US"],"is_corresponding":false,"raw_author_name":"Edward M. Marcotte","raw_affiliation_strings":["1 Department of Computer Sciences, 1 University Station C0500, 2Department of Chemistry and Biochemistry & Institute for Cellular and Molecular Biology, Center for Systems and Synthetic Biology, 2500 Speedway, The University of Texas at Austin, Austin, TX 78712 and 3Children's Cancer Research Institute, The University of Texas Health Science Center at San Antonio, San Antonio, TX 78229, USA"],"affiliations":[{"raw_affiliation_string":"1 Department of Computer Sciences, 1 University Station C0500, 2Department of Chemistry and Biochemistry & Institute for Cellular and Molecular Biology, Center for Systems and Synthetic Biology, 2500 Speedway, The University of Texas at Austin, Austin, TX 78712 and 3Children's Cancer Research Institute, The University of Texas Health Science Center at San Antonio, San Antonio, TX 78229, USA","institution_ids":["https://openalex.org/I86519309","https://openalex.org/I165951966"]}]},{"author_position":"last","author":{"id":"https://openalex.org/A5083499808","display_name":"Daniel P. Miranker","orcid":"https://orcid.org/0009-0003-8838-2890"},"institutions":[{"id":"https://openalex.org/I86519309","display_name":"The University of Texas at Austin","ror":"https://ror.org/00hj54h04","country_code":"US","type":"education","lineage":["https://openalex.org/I86519309"]},{"id":"https://openalex.org/I165951966","display_name":"The University of Texas Health Science Center at San Antonio","ror":"https://ror.org/02f6dcw23","country_code":"US","type":"education","lineage":["https://openalex.org/I165951966"]}],"countries":["US"],"is_corresponding":false,"raw_author_name":"Daniel P. Miranker","raw_affiliation_strings":["1 Department of Computer Sciences, 1 University Station C0500, 2Department of Chemistry and Biochemistry & Institute for Cellular and Molecular Biology, Center for Systems and Synthetic Biology, 2500 Speedway, The University of Texas at Austin, Austin, TX 78712 and 3Children's Cancer Research Institute, The University of Texas Health Science Center at San Antonio, San Antonio, TX 78229, USA"],"affiliations":[{"raw_affiliation_string":"1 Department of Computer Sciences, 1 University Station C0500, 2Department of Chemistry and Biochemistry & Institute for Cellular and Molecular Biology, Center for Systems and Synthetic Biology, 2500 Speedway, The University of Texas at Austin, Austin, TX 78712 and 3Children's Cancer Research Institute, The University of Texas Health Science Center at San Antonio, San Antonio, TX 78229, USA","institution_ids":["https://openalex.org/I86519309","https://openalex.org/I165951966"]}]}],"institutions":[],"countries_distinct_count":1,"institutions_distinct_count":6,"corresponding_author_ids":["https://openalex.org/A5112742948"],"corresponding_institution_ids":["https://openalex.org/I165951966","https://openalex.org/I86519309"],"apc_list":{"value":3618,"currency":"USD","value_usd":3618},"apc_paid":{"value":3618,"currency":"USD","value_usd":3618},"fwci":2.2845,"has_fulltext":true,"cited_by_count":44,"citation_normalized_percentile":{"value":0.88277333,"is_in_top_1_percent":false,"is_in_top_10_percent":false},"cited_by_percentile_year":{"min":89,"max":99},"biblio":{"volume":"25","issue":"22","first_page":"2955","last_page":"2961"},"is_retracted":false,"is_paratext":false,"is_xpac":false,"primary_topic":{"id":"https://openalex.org/T10887","display_name":"Bioinformatics and Genomic Networks","score":0.9997000098228455,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},"topics":[{"id":"https://openalex.org/T10887","display_name":"Bioinformatics and Genomic Networks","score":0.9997000098228455,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},{"id":"https://openalex.org/T10519","display_name":"Advanced Proteomics Techniques and Applications","score":0.998199999332428,"subfield":{"id":"https://openalex.org/subfields/1607","display_name":"Spectroscopy"},"field":{"id":"https://openalex.org/fields/16","display_name":"Chemistry"},"domain":{"id":"https://openalex.org/domains/3","display_name":"Physical Sciences"}},{"id":"https://openalex.org/T10836","display_name":"Metabolomics and Mass Spectrometry Studies","score":0.998199999332428,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}}],"keywords":[{"id":"https://openalex.org/keywords/identification","display_name":"Identification (biology)","score":0.6674842834472656},{"id":"https://openalex.org/keywords/shotgun-proteomics","display_name":"Shotgun proteomics","score":0.6581016778945923},{"id":"https://openalex.org/keywords/proteomics","display_name":"Proteomics","score":0.5815374851226807},{"id":"https://openalex.org/keywords/context","display_name":"Context (archaeology)","score":0.573324978351593},{"id":"https://openalex.org/keywords/computer-science","display_name":"Computer science","score":0.5480851531028748},{"id":"https://openalex.org/keywords/mass-spectrometry","display_name":"Mass spectrometry","score":0.51713627576828},{"id":"https://openalex.org/keywords/computational-biology","display_name":"Computational biology","score":0.5134221315383911},{"id":"https://openalex.org/keywords/shotgun","display_name":"Shotgun","score":0.5033804774284363},{"id":"https://openalex.org/keywords/tandem-mass-spectrometry","display_name":"Tandem mass spectrometry","score":0.48451560735702515},{"id":"https://openalex.org/keywords/data-mining","display_name":"Data mining","score":0.4233185648918152},{"id":"https://openalex.org/keywords/bioinformatics","display_name":"Bioinformatics","score":0.35402795672416687},{"id":"https://openalex.org/keywords/biology","display_name":"Biology","score":0.24691903591156006},{"id":"https://openalex.org/keywords/chemistry","display_name":"Chemistry","score":0.23761343955993652},{"id":"https://openalex.org/keywords/chromatography","display_name":"Chromatography","score":0.21326342225074768},{"id":"https://openalex.org/keywords/gene","display_name":"Gene","score":0.21095433831214905},{"id":"https://openalex.org/keywords/genetics","display_name":"Genetics","score":0.12407654523849487}],"concepts":[{"id":"https://openalex.org/C116834253","wikidata":"https://www.wikidata.org/wiki/Q2039217","display_name":"Identification (biology)","level":2,"score":0.6674842834472656},{"id":"https://openalex.org/C68289359","wikidata":"https://www.wikidata.org/wiki/Q7502514","display_name":"Shotgun proteomics","level":4,"score":0.6581016778945923},{"id":"https://openalex.org/C46111723","wikidata":"https://www.wikidata.org/wiki/Q471857","display_name":"Proteomics","level":3,"score":0.5815374851226807},{"id":"https://openalex.org/C2779343474","wikidata":"https://www.wikidata.org/wiki/Q3109175","display_name":"Context (archaeology)","level":2,"score":0.573324978351593},{"id":"https://openalex.org/C41008148","wikidata":"https://www.wikidata.org/wiki/Q21198","display_name":"Computer science","level":0,"score":0.5480851531028748},{"id":"https://openalex.org/C162356407","wikidata":"https://www.wikidata.org/wiki/Q180809","display_name":"Mass spectrometry","level":2,"score":0.51713627576828},{"id":"https://openalex.org/C70721500","wikidata":"https://www.wikidata.org/wiki/Q177005","display_name":"Computational biology","level":1,"score":0.5134221315383911},{"id":"https://openalex.org/C2781434637","wikidata":"https://www.wikidata.org/wiki/Q486396","display_name":"Shotgun","level":3,"score":0.5033804774284363},{"id":"https://openalex.org/C31827203","wikidata":"https://www.wikidata.org/wiki/Q874296","display_name":"Tandem mass spectrometry","level":3,"score":0.48451560735702515},{"id":"https://openalex.org/C124101348","wikidata":"https://www.wikidata.org/wiki/Q172491","display_name":"Data mining","level":1,"score":0.4233185648918152},{"id":"https://openalex.org/C60644358","wikidata":"https://www.wikidata.org/wiki/Q128570","display_name":"Bioinformatics","level":1,"score":0.35402795672416687},{"id":"https://openalex.org/C86803240","wikidata":"https://www.wikidata.org/wiki/Q420","display_name":"Biology","level":0,"score":0.24691903591156006},{"id":"https://openalex.org/C185592680","wikidata":"https://www.wikidata.org/wiki/Q2329","display_name":"Chemistry","level":0,"score":0.23761343955993652},{"id":"https://openalex.org/C43617362","wikidata":"https://www.wikidata.org/wiki/Q170050","display_name":"Chromatography","level":1,"score":0.21326342225074768},{"id":"https://openalex.org/C104317684","wikidata":"https://www.wikidata.org/wiki/Q7187","display_name":"Gene","level":2,"score":0.21095433831214905},{"id":"https://openalex.org/C54355233","wikidata":"https://www.wikidata.org/wiki/Q7162","display_name":"Genetics","level":1,"score":0.12407654523849487},{"id":"https://openalex.org/C59822182","wikidata":"https://www.wikidata.org/wiki/Q441","display_name":"Botany","level":1,"score":0.0},{"id":"https://openalex.org/C151730666","wikidata":"https://www.wikidata.org/wiki/Q7205","display_name":"Paleontology","level":1,"score":0.0}],"mesh":[{"descriptor_ui":"D011506","descriptor_name":"Proteins","qualifier_ui":"Q000737","qualifier_name":"chemistry","is_major_topic":false},{"descriptor_ui":"D011506","descriptor_name":"Proteins","qualifier_ui":"Q000737","qualifier_name":"chemistry","is_major_topic":false},{"descriptor_ui":"D011506","descriptor_name":"Proteins","qualifier_ui":"Q000737","qualifier_name":"chemistry","is_major_topic":false},{"descriptor_ui":"D019295","descriptor_name":"Computational Biology","qualifier_ui":"Q000379","qualifier_name":"methods","is_major_topic":false},{"descriptor_ui":"D019295","descriptor_name":"Computational Biology","qualifier_ui":"Q000379","qualifier_name":"methods","is_major_topic":false},{"descriptor_ui":"D019295","descriptor_name":"Computational Biology","qualifier_ui":"Q000379","qualifier_name":"methods","is_major_topic":false},{"descriptor_ui":"D020543","descriptor_name":"Proteome","qualifier_ui":"Q000032","qualifier_name":"analysis","is_major_topic":false},{"descriptor_ui":"D020543","descriptor_name":"Proteome","qualifier_ui":"Q000032","qualifier_name":"analysis","is_major_topic":false},{"descriptor_ui":"D020543","descriptor_name":"Proteome","qualifier_ui":"Q000032","qualifier_name":"analysis","is_major_topic":false},{"descriptor_ui":"D030562","descriptor_name":"Databases, Protein","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D030562","descriptor_name":"Databases, Protein","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D030562","descriptor_name":"Databases, Protein","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D040901","descriptor_name":"Proteomics","qualifier_ui":"Q000379","qualifier_name":"methods","is_major_topic":false},{"descriptor_ui":"D040901","descriptor_name":"Proteomics","qualifier_ui":"Q000379","qualifier_name":"methods","is_major_topic":false},{"descriptor_ui":"D040901","descriptor_name":"Proteomics","qualifier_ui":"Q000379","qualifier_name":"methods","is_major_topic":false},{"descriptor_ui":"D053263","descriptor_name":"Gene Regulatory Networks","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D053263","descriptor_name":"Gene Regulatory Networks","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D053263","descriptor_name":"Gene Regulatory Networks","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D053719","descriptor_name":"Tandem Mass Spectrometry","qualifier_ui":"Q000379","qualifier_name":"methods","is_major_topic":false},{"descriptor_ui":"D053719","descriptor_name":"Tandem Mass Spectrometry","qualifier_ui":"Q000379","qualifier_name":"methods","is_major_topic":false},{"descriptor_ui":"D053719","descriptor_name":"Tandem Mass Spectrometry","qualifier_ui":"Q000379","qualifier_name":"methods","is_major_topic":false}],"locations_count":4,"locations":[{"id":"doi:10.1093/bioinformatics/btp461","is_oa":true,"landing_page_url":"https://doi.org/10.1093/bioinformatics/btp461","pdf_url":"https://academic.oup.com/bioinformatics/article-pdf/25/22/2955/48997485/bioinformatics_25_22_2955.pdf","source":{"id":"https://openalex.org/S52395412","display_name":"Bioinformatics","issn_l":"1367-4803","issn":["1367-4803","1367-4811"],"is_oa":false,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310311648","host_organization_name":"Oxford University Press","host_organization_lineage":["https://openalex.org/P4310311648","https://openalex.org/P4310311647"],"host_organization_lineage_names":["Oxford University Press","University of Oxford"],"type":"journal"},"license":"cc-by-nc","license_id":"https://openalex.org/licenses/cc-by-nc","version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Bioinformatics","raw_type":"journal-article"},{"id":"pmid:19633097","is_oa":false,"landing_page_url":"https://pubmed.ncbi.nlm.nih.gov/19633097","pdf_url":null,"source":{"id":"https://openalex.org/S4306525036","display_name":"PubMed","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I1299303238","host_organization_name":"National Institutes of Health","host_organization_lineage":["https://openalex.org/I1299303238"],"host_organization_lineage_names":[],"type":"repository"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Bioinformatics (Oxford, England)","raw_type":null},{"id":"pmh:oai:pubmedcentral.nih.gov:2773251","is_oa":true,"landing_page_url":"https://www.ncbi.nlm.nih.gov/pmc/articles/2773251","pdf_url":null,"source":{"id":"https://openalex.org/S2764455111","display_name":"PubMed Central","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I1299303238","host_organization_name":"National Institutes of Health","host_organization_lineage":["https://openalex.org/I1299303238"],"host_organization_lineage_names":[],"type":"repository"},"license":null,"license_id":null,"version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":"Bioinformatics","raw_type":"Text"},{"id":"pmh:oai:scholarworks.unist.ac.kr:201301/13337","is_oa":false,"landing_page_url":"https://scholarworks.unist.ac.kr/handle/201301/13337","pdf_url":null,"source":{"id":"https://openalex.org/S4306401118","display_name":"Scholarworks@UNIST (Ulsan National Institute of Science and Technology)","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I48566637","host_organization_name":"Ulsan National Institute of Science and Technology","host_organization_lineage":["https://openalex.org/I48566637"],"host_organization_lineage_names":[],"type":"repository"},"license":null,"license_id":null,"version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":"","raw_type":"ARTICLE"}],"best_oa_location":{"id":"doi:10.1093/bioinformatics/btp461","is_oa":true,"landing_page_url":"https://doi.org/10.1093/bioinformatics/btp461","pdf_url":"https://academic.oup.com/bioinformatics/article-pdf/25/22/2955/48997485/bioinformatics_25_22_2955.pdf","source":{"id":"https://openalex.org/S52395412","display_name":"Bioinformatics","issn_l":"1367-4803","issn":["1367-4803","1367-4811"],"is_oa":false,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310311648","host_organization_name":"Oxford University Press","host_organization_lineage":["https://openalex.org/P4310311648","https://openalex.org/P4310311647"],"host_organization_lineage_names":["Oxford University Press","University of Oxford"],"type":"journal"},"license":"cc-by-nc","license_id":"https://openalex.org/licenses/cc-by-nc","version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Bioinformatics","raw_type":"journal-article"},"sustainable_development_goals":[],"awards":[{"id":"https://openalex.org/G2244499271","display_name":"Quantitative Proteomics Using All-Against-All Biological Data Analysis","funder_award_id":"0640923","funder_id":"https://openalex.org/F4320306076","funder_display_name":"National Science Foundation"},{"id":"https://openalex.org/G3899806454","display_name":null,"funder_award_id":"F-1515","funder_id":"https://openalex.org/F4320306076","funder_display_name":"National Science Foundation"},{"id":"https://openalex.org/G6135638177","display_name":null,"funder_award_id":"F-1515","funder_id":"https://openalex.org/F4320332161","funder_display_name":"National Institutes of Health"},{"id":"https://openalex.org/G848032724","display_name":null,"funder_award_id":"Science","funder_id":"https://openalex.org/F4320306076","funder_display_name":"National Science Foundation"}],"funders":[{"id":"https://openalex.org/F4320306076","display_name":"National Science Foundation","ror":"https://ror.org/021nxhr62"},{"id":"https://openalex.org/F4320332161","display_name":"National Institutes of Health","ror":"https://ror.org/01cwqze88"}],"has_content":{"pdf":true,"grobid_xml":true},"content_urls":{"pdf":"https://content.openalex.org/works/W2146405127.pdf","grobid_xml":"https://content.openalex.org/works/W2146405127.grobid-xml"},"referenced_works_count":51,"referenced_works":["https://openalex.org/W1533744928","https://openalex.org/W1533936090","https://openalex.org/W1597678601","https://openalex.org/W1608412409","https://openalex.org/W1854214752","https://openalex.org/W1913111655","https://openalex.org/W1964542367","https://openalex.org/W1964895626","https://openalex.org/W1976386441","https://openalex.org/W1990299806","https://openalex.org/W1993009001","https://openalex.org/W2006795091","https://openalex.org/W2013947447","https://openalex.org/W2015556811","https://openalex.org/W2019240775","https://openalex.org/W2024668145","https://openalex.org/W2025905237","https://openalex.org/W2046618236","https://openalex.org/W2053943711","https://openalex.org/W2058015510","https://openalex.org/W2061037294","https://openalex.org/W2065436349","https://openalex.org/W2074755764","https://openalex.org/W2075951102","https://openalex.org/W2090806203","https://openalex.org/W2098039318","https://openalex.org/W2106391842","https://openalex.org/W2109327803","https://openalex.org/W2112078820","https://openalex.org/W2122683221","https://openalex.org/W2124168655","https://openalex.org/W2126542567","https://openalex.org/W2126991359","https://openalex.org/W2129776684","https://openalex.org/W2130706354","https://openalex.org/W2142437744","https://openalex.org/W2146408674","https://openalex.org/W2147461734","https://openalex.org/W2147698768","https://openalex.org/W2148342439","https://openalex.org/W2148851475","https://openalex.org/W2150566147","https://openalex.org/W2151763757","https://openalex.org/W2152677707","https://openalex.org/W2153132589","https://openalex.org/W2158698691","https://openalex.org/W2159482845","https://openalex.org/W2159675211","https://openalex.org/W2271295020","https://openalex.org/W3199143553","https://openalex.org/W6639055396"],"related_works":["https://openalex.org/W2036789867","https://openalex.org/W4299663967","https://openalex.org/W1662072142","https://openalex.org/W2371475667","https://openalex.org/W2971480178","https://openalex.org/W2046727518","https://openalex.org/W1998648829","https://openalex.org/W2121165269","https://openalex.org/W4254600462","https://openalex.org/W2157839186"],"abstract_inverted_index":{"Software":[0],"and":[1],"datasets":[2],"are":[3],"available":[4],"at":[5],"http://aug.csres.utexas.edu/msnet":[6]},"counts_by_year":[{"year":2024,"cited_by_count":1},{"year":2023,"cited_by_count":1},{"year":2022,"cited_by_count":1},{"year":2021,"cited_by_count":5},{"year":2020,"cited_by_count":1},{"year":2018,"cited_by_count":1},{"year":2017,"cited_by_count":1},{"year":2016,"cited_by_count":2},{"year":2015,"cited_by_count":5},{"year":2014,"cited_by_count":3},{"year":2013,"cited_by_count":6},{"year":2012,"cited_by_count":7}],"updated_date":"2026-03-20T23:20:44.827607","created_date":"2025-10-10T00:00:00"}
