{"id":"https://openalex.org/W2099907934","doi":"https://doi.org/10.1093/bioinformatics/btp447","title":"FRODOCK: a new approach for fast rotational protein\u2013protein docking","display_name":"FRODOCK: a new approach for fast rotational protein\u2013protein docking","publication_year":2009,"publication_date":"2009-07-20","ids":{"openalex":"https://openalex.org/W2099907934","doi":"https://doi.org/10.1093/bioinformatics/btp447","mag":"2099907934","pmid":"https://pubmed.ncbi.nlm.nih.gov/19620099"},"language":"en","primary_location":{"id":"doi:10.1093/bioinformatics/btp447","is_oa":true,"landing_page_url":"https://doi.org/10.1093/bioinformatics/btp447","pdf_url":"https://academic.oup.com/bioinformatics/article-pdf/25/19/2544/48994194/bioinformatics_25_19_2544.pdf","source":{"id":"https://openalex.org/S52395412","display_name":"Bioinformatics","issn_l":"1367-4803","issn":["1367-4803","1367-4811"],"is_oa":false,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310311648","host_organization_name":"Oxford University Press","host_organization_lineage":["https://openalex.org/P4310311648","https://openalex.org/P4310311647"],"host_organization_lineage_names":["Oxford University Press","University of Oxford"],"type":"journal"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Bioinformatics","raw_type":"journal-article"},"type":"article","indexed_in":["crossref","doaj","pubmed"],"open_access":{"is_oa":true,"oa_status":"bronze","oa_url":"https://academic.oup.com/bioinformatics/article-pdf/25/19/2544/48994194/bioinformatics_25_19_2544.pdf","any_repository_has_fulltext":false},"authorships":[{"author_position":"first","author":{"id":"https://openalex.org/A5005566175","display_name":"Jos\u00e9 Ignacio Garz\u00f3n","orcid":null},"institutions":[{"id":"https://openalex.org/I123431417","display_name":"Scripps Research Institute","ror":"https://ror.org/02dxx6824","country_code":"US","type":"nonprofit","lineage":["https://openalex.org/I123431417"]},{"id":"https://openalex.org/I134820265","display_name":"Consejo Superior de Investigaciones Cient\u00edficas","ror":"https://ror.org/02gfc7t72","country_code":"ES","type":"government","lineage":["https://openalex.org/I134820265"]},{"id":"https://openalex.org/I2799803557","display_name":"Barcelona Supercomputing Center","ror":"https://ror.org/05sd8tv96","country_code":"ES","type":"facility","lineage":["https://openalex.org/I2799803557","https://openalex.org/I9617848"]},{"id":"https://openalex.org/I4210147680","display_name":"Centro de Investigaciones Biol\u00f3gicas Margarita Salas","ror":"https://ror.org/04advdf21","country_code":"ES","type":"facility","lineage":["https://openalex.org/I134820265","https://openalex.org/I4210147680"]},{"id":"https://openalex.org/I9617848","display_name":"Universitat Polit\u00e8cnica de Catalunya","ror":"https://ror.org/03mb6wj31","country_code":"ES","type":"education","lineage":["https://openalex.org/I9617848"]}],"countries":["ES","US"],"is_corresponding":false,"raw_author_name":"Jos\u00e9 Ignacio Garzon","raw_affiliation_strings":["1 Centro de Investigaciones Biol\u00f3gicas, CSIC, Ramiro de Maeztu, 9. 28040 Madrid, Spain, 2Barcelona Supercomputing Center, 3National Institute of Bioinformatics, Computational Bioinformatics, Jordi Girona 29, Barcelona 08034, Spain and 4Department of Molecular Biology, The Scripps Research Institute La Jolla, CA 92037, USA"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"1 Centro de Investigaciones Biol\u00f3gicas, CSIC, Ramiro de Maeztu, 9. 28040 Madrid, Spain, 2Barcelona Supercomputing Center, 3National Institute of Bioinformatics, Computational Bioinformatics, Jordi Girona 29, Barcelona 08034, Spain and 4Department of Molecular Biology, The Scripps Research Institute La Jolla, CA 92037, USA","institution_ids":["https://openalex.org/I4210147680","https://openalex.org/I2799803557","https://openalex.org/I134820265","https://openalex.org/I9617848","https://openalex.org/I123431417"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5061629048","display_name":"Jos\u00e9 Ram\u00f3n L\u00f3pez\u2010Blanco","orcid":"https://orcid.org/0000-0002-5891-4134"},"institutions":[{"id":"https://openalex.org/I123431417","display_name":"Scripps Research Institute","ror":"https://ror.org/02dxx6824","country_code":"US","type":"nonprofit","lineage":["https://openalex.org/I123431417"]},{"id":"https://openalex.org/I134820265","display_name":"Consejo Superior de Investigaciones Cient\u00edficas","ror":"https://ror.org/02gfc7t72","country_code":"ES","type":"government","lineage":["https://openalex.org/I134820265"]},{"id":"https://openalex.org/I2799803557","display_name":"Barcelona Supercomputing Center","ror":"https://ror.org/05sd8tv96","country_code":"ES","type":"facility","lineage":["https://openalex.org/I2799803557","https://openalex.org/I9617848"]},{"id":"https://openalex.org/I4210147680","display_name":"Centro de Investigaciones Biol\u00f3gicas Margarita Salas","ror":"https://ror.org/04advdf21","country_code":"ES","type":"facility","lineage":["https://openalex.org/I134820265","https://openalex.org/I4210147680"]},{"id":"https://openalex.org/I9617848","display_name":"Universitat Polit\u00e8cnica de Catalunya","ror":"https://ror.org/03mb6wj31","country_code":"ES","type":"education","lineage":["https://openalex.org/I9617848"]}],"countries":["ES","US"],"is_corresponding":false,"raw_author_name":"Jos\u00e9 Ram\u00f3n Lop\u00e9z-Blanco","raw_affiliation_strings":["1 Centro de Investigaciones Biol\u00f3gicas, CSIC, Ramiro de Maeztu, 9. 28040 Madrid, Spain, 2Barcelona Supercomputing Center, 3National Institute of Bioinformatics, Computational Bioinformatics, Jordi Girona 29, Barcelona 08034, Spain and 4Department of Molecular Biology, The Scripps Research Institute La Jolla, CA 92037, USA"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"1 Centro de Investigaciones Biol\u00f3gicas, CSIC, Ramiro de Maeztu, 9. 28040 Madrid, Spain, 2Barcelona Supercomputing Center, 3National Institute of Bioinformatics, Computational Bioinformatics, Jordi Girona 29, Barcelona 08034, Spain and 4Department of Molecular Biology, The Scripps Research Institute La Jolla, CA 92037, USA","institution_ids":["https://openalex.org/I4210147680","https://openalex.org/I2799803557","https://openalex.org/I134820265","https://openalex.org/I9617848","https://openalex.org/I123431417"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5087135746","display_name":"Carles Pons","orcid":"https://orcid.org/0000-0002-9131-9089"},"institutions":[{"id":"https://openalex.org/I123431417","display_name":"Scripps Research Institute","ror":"https://ror.org/02dxx6824","country_code":"US","type":"nonprofit","lineage":["https://openalex.org/I123431417"]},{"id":"https://openalex.org/I134820265","display_name":"Consejo Superior de Investigaciones Cient\u00edficas","ror":"https://ror.org/02gfc7t72","country_code":"ES","type":"government","lineage":["https://openalex.org/I134820265"]},{"id":"https://openalex.org/I2799803557","display_name":"Barcelona Supercomputing Center","ror":"https://ror.org/05sd8tv96","country_code":"ES","type":"facility","lineage":["https://openalex.org/I2799803557","https://openalex.org/I9617848"]},{"id":"https://openalex.org/I4210147680","display_name":"Centro de Investigaciones Biol\u00f3gicas Margarita Salas","ror":"https://ror.org/04advdf21","country_code":"ES","type":"facility","lineage":["https://openalex.org/I134820265","https://openalex.org/I4210147680"]},{"id":"https://openalex.org/I9617848","display_name":"Universitat Polit\u00e8cnica de Catalunya","ror":"https://ror.org/03mb6wj31","country_code":"ES","type":"education","lineage":["https://openalex.org/I9617848"]}],"countries":["ES","US"],"is_corresponding":false,"raw_author_name":"Carles Pons","raw_affiliation_strings":["1 Centro de Investigaciones Biol\u00f3gicas, CSIC, Ramiro de Maeztu, 9. 28040 Madrid, Spain, 2Barcelona Supercomputing Center, 3National Institute of Bioinformatics, Computational Bioinformatics, Jordi Girona 29, Barcelona 08034, Spain and 4Department of Molecular Biology, The Scripps Research Institute La Jolla, CA 92037, USA"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"1 Centro de Investigaciones Biol\u00f3gicas, CSIC, Ramiro de Maeztu, 9. 28040 Madrid, Spain, 2Barcelona Supercomputing Center, 3National Institute of Bioinformatics, Computational Bioinformatics, Jordi Girona 29, Barcelona 08034, Spain and 4Department of Molecular Biology, The Scripps Research Institute La Jolla, CA 92037, USA","institution_ids":["https://openalex.org/I4210147680","https://openalex.org/I2799803557","https://openalex.org/I134820265","https://openalex.org/I9617848","https://openalex.org/I123431417"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5068517610","display_name":"Julio Kovacs","orcid":"https://orcid.org/0000-0002-1829-7119"},"institutions":[{"id":"https://openalex.org/I123431417","display_name":"Scripps Research Institute","ror":"https://ror.org/02dxx6824","country_code":"US","type":"nonprofit","lineage":["https://openalex.org/I123431417"]},{"id":"https://openalex.org/I134820265","display_name":"Consejo Superior de Investigaciones Cient\u00edficas","ror":"https://ror.org/02gfc7t72","country_code":"ES","type":"government","lineage":["https://openalex.org/I134820265"]},{"id":"https://openalex.org/I2799803557","display_name":"Barcelona Supercomputing Center","ror":"https://ror.org/05sd8tv96","country_code":"ES","type":"facility","lineage":["https://openalex.org/I2799803557","https://openalex.org/I9617848"]},{"id":"https://openalex.org/I4210147680","display_name":"Centro de Investigaciones Biol\u00f3gicas Margarita Salas","ror":"https://ror.org/04advdf21","country_code":"ES","type":"facility","lineage":["https://openalex.org/I134820265","https://openalex.org/I4210147680"]},{"id":"https://openalex.org/I9617848","display_name":"Universitat Polit\u00e8cnica de Catalunya","ror":"https://ror.org/03mb6wj31","country_code":"ES","type":"education","lineage":["https://openalex.org/I9617848"]}],"countries":["ES","US"],"is_corresponding":false,"raw_author_name":"Julio Kovacs","raw_affiliation_strings":["1 Centro de Investigaciones Biol\u00f3gicas, CSIC, Ramiro de Maeztu, 9. 28040 Madrid, Spain, 2Barcelona Supercomputing Center, 3National Institute of Bioinformatics, Computational Bioinformatics, Jordi Girona 29, Barcelona 08034, Spain and 4Department of Molecular Biology, The Scripps Research Institute La Jolla, CA 92037, USA"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"1 Centro de Investigaciones Biol\u00f3gicas, CSIC, Ramiro de Maeztu, 9. 28040 Madrid, Spain, 2Barcelona Supercomputing Center, 3National Institute of Bioinformatics, Computational Bioinformatics, Jordi Girona 29, Barcelona 08034, Spain and 4Department of Molecular Biology, The Scripps Research Institute La Jolla, CA 92037, USA","institution_ids":["https://openalex.org/I4210147680","https://openalex.org/I2799803557","https://openalex.org/I134820265","https://openalex.org/I9617848","https://openalex.org/I123431417"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5064101943","display_name":"Ruben Abagyan","orcid":"https://orcid.org/0000-0001-9309-2976"},"institutions":[{"id":"https://openalex.org/I123431417","display_name":"Scripps Research Institute","ror":"https://ror.org/02dxx6824","country_code":"US","type":"nonprofit","lineage":["https://openalex.org/I123431417"]},{"id":"https://openalex.org/I134820265","display_name":"Consejo Superior de Investigaciones Cient\u00edficas","ror":"https://ror.org/02gfc7t72","country_code":"ES","type":"government","lineage":["https://openalex.org/I134820265"]},{"id":"https://openalex.org/I2799803557","display_name":"Barcelona Supercomputing Center","ror":"https://ror.org/05sd8tv96","country_code":"ES","type":"facility","lineage":["https://openalex.org/I2799803557","https://openalex.org/I9617848"]},{"id":"https://openalex.org/I4210147680","display_name":"Centro de Investigaciones Biol\u00f3gicas Margarita Salas","ror":"https://ror.org/04advdf21","country_code":"ES","type":"facility","lineage":["https://openalex.org/I134820265","https://openalex.org/I4210147680"]},{"id":"https://openalex.org/I9617848","display_name":"Universitat Polit\u00e8cnica de Catalunya","ror":"https://ror.org/03mb6wj31","country_code":"ES","type":"education","lineage":["https://openalex.org/I9617848"]}],"countries":["ES","US"],"is_corresponding":false,"raw_author_name":"Ruben Abagyan","raw_affiliation_strings":["1 Centro de Investigaciones Biol\u00f3gicas, CSIC, Ramiro de Maeztu, 9. 28040 Madrid, Spain, 2Barcelona Supercomputing Center, 3National Institute of Bioinformatics, Computational Bioinformatics, Jordi Girona 29, Barcelona 08034, Spain and 4Department of Molecular Biology, The Scripps Research Institute La Jolla, CA 92037, USA"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"1 Centro de Investigaciones Biol\u00f3gicas, CSIC, Ramiro de Maeztu, 9. 28040 Madrid, Spain, 2Barcelona Supercomputing Center, 3National Institute of Bioinformatics, Computational Bioinformatics, Jordi Girona 29, Barcelona 08034, Spain and 4Department of Molecular Biology, The Scripps Research Institute La Jolla, CA 92037, USA","institution_ids":["https://openalex.org/I4210147680","https://openalex.org/I2799803557","https://openalex.org/I134820265","https://openalex.org/I9617848","https://openalex.org/I123431417"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5021117369","display_name":"Juan Fern\u00e1ndez\u2010Recio","orcid":"https://orcid.org/0000-0002-3986-7686"},"institutions":[{"id":"https://openalex.org/I123431417","display_name":"Scripps Research Institute","ror":"https://ror.org/02dxx6824","country_code":"US","type":"nonprofit","lineage":["https://openalex.org/I123431417"]},{"id":"https://openalex.org/I134820265","display_name":"Consejo Superior de Investigaciones Cient\u00edficas","ror":"https://ror.org/02gfc7t72","country_code":"ES","type":"government","lineage":["https://openalex.org/I134820265"]},{"id":"https://openalex.org/I2799803557","display_name":"Barcelona Supercomputing Center","ror":"https://ror.org/05sd8tv96","country_code":"ES","type":"facility","lineage":["https://openalex.org/I2799803557","https://openalex.org/I9617848"]},{"id":"https://openalex.org/I4210147680","display_name":"Centro de Investigaciones Biol\u00f3gicas Margarita Salas","ror":"https://ror.org/04advdf21","country_code":"ES","type":"facility","lineage":["https://openalex.org/I134820265","https://openalex.org/I4210147680"]},{"id":"https://openalex.org/I9617848","display_name":"Universitat Polit\u00e8cnica de Catalunya","ror":"https://ror.org/03mb6wj31","country_code":"ES","type":"education","lineage":["https://openalex.org/I9617848"]}],"countries":["ES","US"],"is_corresponding":false,"raw_author_name":"Juan Fernandez-Recio","raw_affiliation_strings":["1 Centro de Investigaciones Biol\u00f3gicas, CSIC, Ramiro de Maeztu, 9. 28040 Madrid, Spain, 2Barcelona Supercomputing Center, 3National Institute of Bioinformatics, Computational Bioinformatics, Jordi Girona 29, Barcelona 08034, Spain and 4Department of Molecular Biology, The Scripps Research Institute La Jolla, CA 92037, USA"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"1 Centro de Investigaciones Biol\u00f3gicas, CSIC, Ramiro de Maeztu, 9. 28040 Madrid, Spain, 2Barcelona Supercomputing Center, 3National Institute of Bioinformatics, Computational Bioinformatics, Jordi Girona 29, Barcelona 08034, Spain and 4Department of Molecular Biology, The Scripps Research Institute La Jolla, CA 92037, USA","institution_ids":["https://openalex.org/I4210147680","https://openalex.org/I2799803557","https://openalex.org/I134820265","https://openalex.org/I9617848","https://openalex.org/I123431417"]}]},{"author_position":"last","author":{"id":"https://openalex.org/A5016204870","display_name":"Pablo Chac\u00f3n","orcid":"https://orcid.org/0000-0002-3168-4826"},"institutions":[{"id":"https://openalex.org/I123431417","display_name":"Scripps Research Institute","ror":"https://ror.org/02dxx6824","country_code":"US","type":"nonprofit","lineage":["https://openalex.org/I123431417"]},{"id":"https://openalex.org/I134820265","display_name":"Consejo Superior de Investigaciones Cient\u00edficas","ror":"https://ror.org/02gfc7t72","country_code":"ES","type":"government","lineage":["https://openalex.org/I134820265"]},{"id":"https://openalex.org/I2799803557","display_name":"Barcelona Supercomputing Center","ror":"https://ror.org/05sd8tv96","country_code":"ES","type":"facility","lineage":["https://openalex.org/I2799803557","https://openalex.org/I9617848"]},{"id":"https://openalex.org/I4210147680","display_name":"Centro de Investigaciones Biol\u00f3gicas Margarita Salas","ror":"https://ror.org/04advdf21","country_code":"ES","type":"facility","lineage":["https://openalex.org/I134820265","https://openalex.org/I4210147680"]},{"id":"https://openalex.org/I9617848","display_name":"Universitat Polit\u00e8cnica de Catalunya","ror":"https://ror.org/03mb6wj31","country_code":"ES","type":"education","lineage":["https://openalex.org/I9617848"]}],"countries":["ES","US"],"is_corresponding":true,"raw_author_name":"Pablo Chacon","raw_affiliation_strings":["1 Centro de Investigaciones Biol\u00f3gicas, CSIC, Ramiro de Maeztu, 9. 28040 Madrid, Spain, 2Barcelona Supercomputing Center, 3National Institute of Bioinformatics, Computational Bioinformatics, Jordi Girona 29, Barcelona 08034, Spain and 4Department of Molecular Biology, The Scripps Research Institute La Jolla, CA 92037, USA"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"1 Centro de Investigaciones Biol\u00f3gicas, CSIC, Ramiro de Maeztu, 9. 28040 Madrid, Spain, 2Barcelona Supercomputing Center, 3National Institute of Bioinformatics, Computational Bioinformatics, Jordi Girona 29, Barcelona 08034, Spain and 4Department of Molecular Biology, The Scripps Research Institute La Jolla, CA 92037, USA","institution_ids":["https://openalex.org/I4210147680","https://openalex.org/I2799803557","https://openalex.org/I134820265","https://openalex.org/I9617848","https://openalex.org/I123431417"]}]}],"institutions":[],"countries_distinct_count":2,"institutions_distinct_count":7,"corresponding_author_ids":["https://openalex.org/A5016204870"],"corresponding_institution_ids":["https://openalex.org/I123431417","https://openalex.org/I134820265","https://openalex.org/I2799803557","https://openalex.org/I4210147680","https://openalex.org/I9617848"],"apc_list":{"value":3618,"currency":"USD","value_usd":3618},"apc_paid":null,"fwci":2.6018,"has_fulltext":true,"cited_by_count":158,"citation_normalized_percentile":{"value":0.89837341,"is_in_top_1_percent":false,"is_in_top_10_percent":false},"cited_by_percentile_year":{"min":98,"max":100},"biblio":{"volume":"25","issue":"19","first_page":"2544","last_page":"2551"},"is_retracted":false,"is_paratext":false,"is_xpac":false,"primary_topic":{"id":"https://openalex.org/T10044","display_name":"Protein Structure and Dynamics","score":0.926800012588501,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},"topics":[{"id":"https://openalex.org/T10044","display_name":"Protein Structure and Dynamics","score":0.926800012588501,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},{"id":"https://openalex.org/T10211","display_name":"Computational Drug Discovery Methods","score":0.029600000008940697,"subfield":{"id":"https://openalex.org/subfields/1703","display_name":"Computational Theory and Mathematics"},"field":{"id":"https://openalex.org/fields/17","display_name":"Computer Science"},"domain":{"id":"https://openalex.org/domains/3","display_name":"Physical Sciences"}},{"id":"https://openalex.org/T12254","display_name":"Machine Learning in Bioinformatics","score":0.012500000186264515,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}}],"keywords":[{"id":"https://openalex.org/keywords/docking","display_name":"Docking (animal)","score":0.6716834306716919},{"id":"https://openalex.org/keywords/robustness","display_name":"Robustness (evolution)","score":0.6570720672607422},{"id":"https://openalex.org/keywords/maxima-and-minima","display_name":"Maxima and minima","score":0.6430881023406982},{"id":"https://openalex.org/keywords/computer-science","display_name":"Computer science","score":0.640977144241333},{"id":"https://openalex.org/keywords/macromolecular-docking","display_name":"Macromolecular docking","score":0.5885935425758362},{"id":"https://openalex.org/keywords/grid","display_name":"Grid","score":0.5323033332824707},{"id":"https://openalex.org/keywords/van-der-waals-force","display_name":"van der Waals force","score":0.4885004758834839},{"id":"https://openalex.org/keywords/software","display_name":"Software","score":0.43327975273132324},{"id":"https://openalex.org/keywords/algorithm","display_name":"Algorithm","score":0.4193588197231293},{"id":"https://openalex.org/keywords/biological-system","display_name":"Biological system","score":0.33274394273757935},{"id":"https://openalex.org/keywords/molecular-dynamics","display_name":"Molecular dynamics","score":0.28999435901641846},{"id":"https://openalex.org/keywords/computational-chemistry","display_name":"Computational chemistry","score":0.2391483187675476},{"id":"https://openalex.org/keywords/chemistry","display_name":"Chemistry","score":0.17322003841400146},{"id":"https://openalex.org/keywords/mathematics","display_name":"Mathematics","score":0.16580235958099365},{"id":"https://openalex.org/keywords/biology","display_name":"Biology","score":0.1316203474998474},{"id":"https://openalex.org/keywords/geometry","display_name":"Geometry","score":0.1035841703414917}],"concepts":[{"id":"https://openalex.org/C41685203","wikidata":"https://www.wikidata.org/wiki/Q1974042","display_name":"Docking (animal)","level":2,"score":0.6716834306716919},{"id":"https://openalex.org/C63479239","wikidata":"https://www.wikidata.org/wiki/Q7353546","display_name":"Robustness (evolution)","level":3,"score":0.6570720672607422},{"id":"https://openalex.org/C186633575","wikidata":"https://www.wikidata.org/wiki/Q845060","display_name":"Maxima and minima","level":2,"score":0.6430881023406982},{"id":"https://openalex.org/C41008148","wikidata":"https://www.wikidata.org/wiki/Q21198","display_name":"Computer science","level":0,"score":0.640977144241333},{"id":"https://openalex.org/C116887118","wikidata":"https://www.wikidata.org/wiki/Q836685","display_name":"Macromolecular docking","level":3,"score":0.5885935425758362},{"id":"https://openalex.org/C187691185","wikidata":"https://www.wikidata.org/wiki/Q2020720","display_name":"Grid","level":2,"score":0.5323033332824707},{"id":"https://openalex.org/C126061179","wikidata":"https://www.wikidata.org/wiki/Q189627","display_name":"van der Waals force","level":3,"score":0.4885004758834839},{"id":"https://openalex.org/C2777904410","wikidata":"https://www.wikidata.org/wiki/Q7397","display_name":"Software","level":2,"score":0.43327975273132324},{"id":"https://openalex.org/C11413529","wikidata":"https://www.wikidata.org/wiki/Q8366","display_name":"Algorithm","level":1,"score":0.4193588197231293},{"id":"https://openalex.org/C186060115","wikidata":"https://www.wikidata.org/wiki/Q30336093","display_name":"Biological system","level":1,"score":0.33274394273757935},{"id":"https://openalex.org/C59593255","wikidata":"https://www.wikidata.org/wiki/Q901663","display_name":"Molecular dynamics","level":2,"score":0.28999435901641846},{"id":"https://openalex.org/C147597530","wikidata":"https://www.wikidata.org/wiki/Q369472","display_name":"Computational chemistry","level":1,"score":0.2391483187675476},{"id":"https://openalex.org/C185592680","wikidata":"https://www.wikidata.org/wiki/Q2329","display_name":"Chemistry","level":0,"score":0.17322003841400146},{"id":"https://openalex.org/C33923547","wikidata":"https://www.wikidata.org/wiki/Q395","display_name":"Mathematics","level":0,"score":0.16580235958099365},{"id":"https://openalex.org/C86803240","wikidata":"https://www.wikidata.org/wiki/Q420","display_name":"Biology","level":0,"score":0.1316203474998474},{"id":"https://openalex.org/C2524010","wikidata":"https://www.wikidata.org/wiki/Q8087","display_name":"Geometry","level":1,"score":0.1035841703414917},{"id":"https://openalex.org/C159110408","wikidata":"https://www.wikidata.org/wiki/Q121176","display_name":"Nursing","level":1,"score":0.0},{"id":"https://openalex.org/C178790620","wikidata":"https://www.wikidata.org/wiki/Q11351","display_name":"Organic chemistry","level":1,"score":0.0},{"id":"https://openalex.org/C104317684","wikidata":"https://www.wikidata.org/wiki/Q7187","display_name":"Gene","level":2,"score":0.0},{"id":"https://openalex.org/C199360897","wikidata":"https://www.wikidata.org/wiki/Q9143","display_name":"Programming language","level":1,"score":0.0},{"id":"https://openalex.org/C55493867","wikidata":"https://www.wikidata.org/wiki/Q7094","display_name":"Biochemistry","level":1,"score":0.0},{"id":"https://openalex.org/C71924100","wikidata":"https://www.wikidata.org/wiki/Q11190","display_name":"Medicine","level":0,"score":0.0},{"id":"https://openalex.org/C32909587","wikidata":"https://www.wikidata.org/wiki/Q11369","display_name":"Molecule","level":2,"score":0.0},{"id":"https://openalex.org/C134306372","wikidata":"https://www.wikidata.org/wiki/Q7754","display_name":"Mathematical analysis","level":1,"score":0.0}],"mesh":[{"descriptor_ui":"D000465","descriptor_name":"Algorithms","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D000465","descriptor_name":"Algorithms","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D000465","descriptor_name":"Algorithms","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D011506","descriptor_name":"Proteins","qualifier_ui":"Q000737","qualifier_name":"chemistry","is_major_topic":false},{"descriptor_ui":"D011506","descriptor_name":"Proteins","qualifier_ui":"Q000737","qualifier_name":"chemistry","is_major_topic":false},{"descriptor_ui":"D011506","descriptor_name":"Proteins","qualifier_ui":"Q000737","qualifier_name":"chemistry","is_major_topic":false},{"descriptor_ui":"D012984","descriptor_name":"Software","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D012984","descriptor_name":"Software","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D012984","descriptor_name":"Software","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D019295","descriptor_name":"Computational Biology","qualifier_ui":"Q000379","qualifier_name":"methods","is_major_topic":false},{"descriptor_ui":"D019295","descriptor_name":"Computational Biology","qualifier_ui":"Q000379","qualifier_name":"methods","is_major_topic":false},{"descriptor_ui":"D019295","descriptor_name":"Computational Biology","qualifier_ui":"Q000379","qualifier_name":"methods","is_major_topic":false},{"descriptor_ui":"D025941","descriptor_name":"Protein Interaction Mapping","qualifier_ui":"Q000379","qualifier_name":"methods","is_major_topic":false},{"descriptor_ui":"D025941","descriptor_name":"Protein Interaction Mapping","qualifier_ui":"Q000379","qualifier_name":"methods","is_major_topic":false},{"descriptor_ui":"D025941","descriptor_name":"Protein Interaction Mapping","qualifier_ui":"Q000379","qualifier_name":"methods","is_major_topic":false}],"locations_count":3,"locations":[{"id":"doi:10.1093/bioinformatics/btp447","is_oa":true,"landing_page_url":"https://doi.org/10.1093/bioinformatics/btp447","pdf_url":"https://academic.oup.com/bioinformatics/article-pdf/25/19/2544/48994194/bioinformatics_25_19_2544.pdf","source":{"id":"https://openalex.org/S52395412","display_name":"Bioinformatics","issn_l":"1367-4803","issn":["1367-4803","1367-4811"],"is_oa":false,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310311648","host_organization_name":"Oxford University Press","host_organization_lineage":["https://openalex.org/P4310311648","https://openalex.org/P4310311647"],"host_organization_lineage_names":["Oxford University Press","University of Oxford"],"type":"journal"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Bioinformatics","raw_type":"journal-article"},{"id":"pmid:19620099","is_oa":false,"landing_page_url":"https://pubmed.ncbi.nlm.nih.gov/19620099","pdf_url":null,"source":{"id":"https://openalex.org/S4306525036","display_name":"PubMed","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I1299303238","host_organization_name":"National Institutes of Health","host_organization_lineage":["https://openalex.org/I1299303238"],"host_organization_lineage_names":[],"type":"repository"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Bioinformatics (Oxford, England)","raw_type":null},{"id":"pmh:oai:europepmc.org:1899740","is_oa":false,"landing_page_url":"https://www.ncbi.nlm.nih.gov/pmc/articles/2800348","pdf_url":null,"source":{"id":"https://openalex.org/S4306400806","display_name":"Europe PMC (PubMed Central)","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I1303153112","host_organization_name":"European Bioinformatics Institute","host_organization_lineage":["https://openalex.org/I1303153112"],"host_organization_lineage_names":[],"type":"repository"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":null,"raw_type":"Text"}],"best_oa_location":{"id":"doi:10.1093/bioinformatics/btp447","is_oa":true,"landing_page_url":"https://doi.org/10.1093/bioinformatics/btp447","pdf_url":"https://academic.oup.com/bioinformatics/article-pdf/25/19/2544/48994194/bioinformatics_25_19_2544.pdf","source":{"id":"https://openalex.org/S52395412","display_name":"Bioinformatics","issn_l":"1367-4803","issn":["1367-4803","1367-4811"],"is_oa":false,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310311648","host_organization_name":"Oxford University Press","host_organization_lineage":["https://openalex.org/P4310311648","https://openalex.org/P4310311647"],"host_organization_lineage_names":["Oxford University Press","University of Oxford"],"type":"journal"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Bioinformatics","raw_type":"journal-article"},"sustainable_development_goals":[{"score":0.6600000262260437,"id":"https://metadata.un.org/sdg/7","display_name":"Affordable and clean energy"}],"awards":[{"id":"https://openalex.org/G2687174116","display_name":null,"funder_award_id":"R01-GM071872","funder_id":"https://openalex.org/F4320332161","funder_display_name":"National Institutes of Health"},{"id":"https://openalex.org/G3956400982","display_name":null,"funder_award_id":"GM071872","funder_id":"https://openalex.org/F4320332161","funder_display_name":"National Institutes of Health"}],"funders":[{"id":"https://openalex.org/F4320332161","display_name":"National Institutes of Health","ror":"https://ror.org/01cwqze88"}],"has_content":{"grobid_xml":true,"pdf":true},"content_urls":{"pdf":"https://content.openalex.org/works/W2099907934.pdf","grobid_xml":"https://content.openalex.org/works/W2099907934.grobid-xml"},"referenced_works_count":36,"referenced_works":["https://openalex.org/W198093230","https://openalex.org/W1965499191","https://openalex.org/W1968922152","https://openalex.org/W1983851480","https://openalex.org/W1985481261","https://openalex.org/W1997638778","https://openalex.org/W2000383223","https://openalex.org/W2007517854","https://openalex.org/W2008679330","https://openalex.org/W2014744153","https://openalex.org/W2016385245","https://openalex.org/W2018410079","https://openalex.org/W2027638447","https://openalex.org/W2048643046","https://openalex.org/W2049972706","https://openalex.org/W2057558301","https://openalex.org/W2074104861","https://openalex.org/W2078688023","https://openalex.org/W2095157453","https://openalex.org/W2097031841","https://openalex.org/W2105438341","https://openalex.org/W2110585060","https://openalex.org/W2112087820","https://openalex.org/W2129414710","https://openalex.org/W2129454543","https://openalex.org/W2133712572","https://openalex.org/W2145793759","https://openalex.org/W2151460035","https://openalex.org/W2153731681","https://openalex.org/W2157991822","https://openalex.org/W2158957977","https://openalex.org/W2160223767","https://openalex.org/W2160868144","https://openalex.org/W2162502996","https://openalex.org/W2171249995","https://openalex.org/W4254093784"],"related_works":["https://openalex.org/W2996908194","https://openalex.org/W2585040066","https://openalex.org/W2162380182","https://openalex.org/W3187431608","https://openalex.org/W3005126098","https://openalex.org/W2157273785","https://openalex.org/W2064383522","https://openalex.org/W2942988621","https://openalex.org/W3011103292","https://openalex.org/W2583520705"],"abstract_inverted_index":{"MOTIVATION:":[0],"Prediction":[1],"of":[2,8,51,63,74,95,142,158],"protein-protein":[3,128],"complexes":[4],"from":[5,19],"the":[6,46,52,61,64,72,80,159,162,175],"coordinates":[7],"their":[9],"unbound":[10],"components":[11],"usually":[12],"starts":[13],"by":[14,25,109],"generating":[15],"many":[16],"potential":[17,102],"predictions":[18],"a":[20,26,40,91,110,120,155,167],"rigid-body":[21,147],"6D":[22],"search":[23,117,164],"followed":[24],"second":[27],"stage":[28],"that":[29,141],"aims":[30],"to":[31,43,78,140],"refine":[32],"such":[33],"predictions.":[34],"Here,":[35],"we":[36,59],"present":[37],"and":[38,48,100,113,134],"evaluate":[39],"new":[41,171],"method":[42,160],"effectively":[44],"address":[45],"complexity":[47],"sampling":[49],"requirements":[50],"initial":[53,145],"exhaustive":[54,114,146],"search.":[55,81],"In":[56],"this":[57],"approach":[58],"combine":[60],"projection":[62],"interaction":[65],"terms":[66],"into":[67],"3D":[68],"grid-based":[69],"potentials":[70],"with":[71,119],"efficiency":[73],"spherical":[75],"harmonics":[76],"approximations":[77],"accelerate":[79],"The":[82,104,136],"binding":[83],"energy":[84],"upon":[85],"complex":[86],"formation":[87],"is":[88,138],"approximated":[89],"as":[90],"correlation":[92],"function":[93],"composed":[94],"van":[96],"der":[97],"Waals,":[98],"electrostatics":[99],"desolvation":[101],"terms.":[103],"interaction-energy":[105],"minima":[106],"are":[107],"identified":[108],"novel,":[111],"fast":[112],"rotational":[115],"docking":[116,148,163],"combined":[118],"simple":[121],"translational":[122],"scanning.":[123],"Results":[124],"obtained":[125],"on":[126],"standard":[127],"benchmarks":[129],"demonstrate":[130],"its":[131],"general":[132],"applicability":[133],"robustness.":[135],"accuracy":[137],"comparable":[139],"existing":[143],"state-of-the-art":[144],"tools,":[149],"but":[150],"achieving":[151],"superior":[152],"efficiency.":[153],"Moreover,":[154],"parallel":[156],"version":[157],"performs":[161],"in":[165,174],"just":[166],"few":[168],"minutes,":[169],"opening":[170],"application":[172],"opportunities":[173],"current":[176],"'omics'":[177],"world.":[178],"AVAILABILITY:":[179],"http://sbg.cib.csic.es/Software/FRODOCK/":[180]},"counts_by_year":[{"year":2026,"cited_by_count":3},{"year":2025,"cited_by_count":12},{"year":2024,"cited_by_count":11},{"year":2023,"cited_by_count":9},{"year":2022,"cited_by_count":10},{"year":2021,"cited_by_count":14},{"year":2020,"cited_by_count":16},{"year":2019,"cited_by_count":13},{"year":2018,"cited_by_count":13},{"year":2017,"cited_by_count":7},{"year":2016,"cited_by_count":12},{"year":2015,"cited_by_count":6},{"year":2014,"cited_by_count":7},{"year":2013,"cited_by_count":6},{"year":2012,"cited_by_count":8}],"updated_date":"2026-06-16T07:32:37.131356","created_date":"2025-10-10T00:00:00"}
