{"id":"https://openalex.org/W2103358399","doi":"https://doi.org/10.1093/bioinformatics/btp438","title":"Probabilistic resolution of multi-mapping reads in massively parallel sequencing data using MuMRescueLite","display_name":"Probabilistic resolution of multi-mapping reads in massively parallel sequencing data using MuMRescueLite","publication_year":2009,"publication_date":"2009-07-15","ids":{"openalex":"https://openalex.org/W2103358399","doi":"https://doi.org/10.1093/bioinformatics/btp438","mag":"2103358399","pmid":"https://pubmed.ncbi.nlm.nih.gov/19605420"},"language":"en","primary_location":{"id":"doi:10.1093/bioinformatics/btp438","is_oa":true,"landing_page_url":"https://doi.org/10.1093/bioinformatics/btp438","pdf_url":"https://academic.oup.com/bioinformatics/article-pdf/25/19/2613/48995677/bioinformatics_25_19_2613.pdf","source":{"id":"https://openalex.org/S52395412","display_name":"Bioinformatics","issn_l":"1367-4803","issn":["1367-4803","1367-4811"],"is_oa":false,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310311648","host_organization_name":"Oxford University Press","host_organization_lineage":["https://openalex.org/P4310311648","https://openalex.org/P4310311647"],"host_organization_lineage_names":["Oxford University Press","University of Oxford"],"type":"journal"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Bioinformatics","raw_type":"journal-article"},"type":"article","indexed_in":["crossref","doaj","pubmed"],"open_access":{"is_oa":true,"oa_status":"bronze","oa_url":"https://academic.oup.com/bioinformatics/article-pdf/25/19/2613/48995677/bioinformatics_25_19_2613.pdf","any_repository_has_fulltext":false},"authorships":[{"author_position":"first","author":{"id":"https://openalex.org/A5103777777","display_name":"Takehiro Hashimoto","orcid":null},"institutions":[{"id":"https://openalex.org/I133960621","display_name":"Roslin Institute","ror":"https://ror.org/01920rj20","country_code":"GB","type":"facility","lineage":["https://openalex.org/I133960621","https://openalex.org/I2799693246","https://openalex.org/I4210087105","https://openalex.org/I98677209"]},{"id":"https://openalex.org/I165143802","display_name":"The University of Queensland","ror":"https://ror.org/00rqy9422","country_code":"AU","type":"education","lineage":["https://openalex.org/I165143802"]},{"id":"https://openalex.org/I98677209","display_name":"University of Edinburgh","ror":"https://ror.org/01nrxwf90","country_code":"GB","type":"education","lineage":["https://openalex.org/I98677209"]}],"countries":["AU","GB"],"is_corresponding":false,"raw_author_name":"Takehiro Hashimoto","raw_affiliation_strings":["1 Omics Science Center, RIKEN Yokohama Institute, 1-7-22 Suehiro-cho, Tsurumi, Yokohama 230-0045, Japan, 2Expression Genomics Laboratory, Institute for Molecular Bioscience, University of Queensland, QLD, 4072, Australia and 3Roslin Institute, University of Edinburgh, Roslin, Midlothian, EH25 9PS, Scotland, UK"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"1 Omics Science Center, RIKEN Yokohama Institute, 1-7-22 Suehiro-cho, Tsurumi, Yokohama 230-0045, Japan, 2Expression Genomics Laboratory, Institute for Molecular Bioscience, University of Queensland, QLD, 4072, Australia and 3Roslin Institute, University of Edinburgh, Roslin, Midlothian, EH25 9PS, Scotland, UK","institution_ids":["https://openalex.org/I133960621","https://openalex.org/I165143802","https://openalex.org/I98677209"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5037842288","display_name":"Michiel de Hoon","orcid":"https://orcid.org/0000-0003-0489-2352"},"institutions":[{"id":"https://openalex.org/I133960621","display_name":"Roslin Institute","ror":"https://ror.org/01920rj20","country_code":"GB","type":"facility","lineage":["https://openalex.org/I133960621","https://openalex.org/I2799693246","https://openalex.org/I4210087105","https://openalex.org/I98677209"]},{"id":"https://openalex.org/I165143802","display_name":"The University of Queensland","ror":"https://ror.org/00rqy9422","country_code":"AU","type":"education","lineage":["https://openalex.org/I165143802"]},{"id":"https://openalex.org/I98677209","display_name":"University of Edinburgh","ror":"https://ror.org/01nrxwf90","country_code":"GB","type":"education","lineage":["https://openalex.org/I98677209"]}],"countries":["AU","GB"],"is_corresponding":false,"raw_author_name":"Michiel J.L. de Hoon","raw_affiliation_strings":["1 Omics Science Center, RIKEN Yokohama Institute, 1-7-22 Suehiro-cho, Tsurumi, Yokohama 230-0045, Japan, 2Expression Genomics Laboratory, Institute for Molecular Bioscience, University of Queensland, QLD, 4072, Australia and 3Roslin Institute, University of Edinburgh, Roslin, Midlothian, EH25 9PS, Scotland, UK"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"1 Omics Science Center, RIKEN Yokohama Institute, 1-7-22 Suehiro-cho, Tsurumi, Yokohama 230-0045, Japan, 2Expression Genomics Laboratory, Institute for Molecular Bioscience, University of Queensland, QLD, 4072, Australia and 3Roslin Institute, University of Edinburgh, Roslin, Midlothian, EH25 9PS, Scotland, UK","institution_ids":["https://openalex.org/I133960621","https://openalex.org/I165143802","https://openalex.org/I98677209"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5040120471","display_name":"Sean M. Grimmond","orcid":"https://orcid.org/0000-0002-8102-7998"},"institutions":[{"id":"https://openalex.org/I133960621","display_name":"Roslin Institute","ror":"https://ror.org/01920rj20","country_code":"GB","type":"facility","lineage":["https://openalex.org/I133960621","https://openalex.org/I2799693246","https://openalex.org/I4210087105","https://openalex.org/I98677209"]},{"id":"https://openalex.org/I165143802","display_name":"The University of Queensland","ror":"https://ror.org/00rqy9422","country_code":"AU","type":"education","lineage":["https://openalex.org/I165143802"]},{"id":"https://openalex.org/I98677209","display_name":"University of Edinburgh","ror":"https://ror.org/01nrxwf90","country_code":"GB","type":"education","lineage":["https://openalex.org/I98677209"]}],"countries":["AU","GB"],"is_corresponding":false,"raw_author_name":"Sean M. Grimmond","raw_affiliation_strings":["1 Omics Science Center, RIKEN Yokohama Institute, 1-7-22 Suehiro-cho, Tsurumi, Yokohama 230-0045, Japan, 2Expression Genomics Laboratory, Institute for Molecular Bioscience, University of Queensland, QLD, 4072, Australia and 3Roslin Institute, University of Edinburgh, Roslin, Midlothian, EH25 9PS, Scotland, UK"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"1 Omics Science Center, RIKEN Yokohama Institute, 1-7-22 Suehiro-cho, Tsurumi, Yokohama 230-0045, Japan, 2Expression Genomics Laboratory, Institute for Molecular Bioscience, University of Queensland, QLD, 4072, Australia and 3Roslin Institute, University of Edinburgh, Roslin, Midlothian, EH25 9PS, Scotland, UK","institution_ids":["https://openalex.org/I133960621","https://openalex.org/I165143802","https://openalex.org/I98677209"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5082300031","display_name":"Carsten O. Daub","orcid":"https://orcid.org/0000-0002-3295-8729"},"institutions":[{"id":"https://openalex.org/I133960621","display_name":"Roslin Institute","ror":"https://ror.org/01920rj20","country_code":"GB","type":"facility","lineage":["https://openalex.org/I133960621","https://openalex.org/I2799693246","https://openalex.org/I4210087105","https://openalex.org/I98677209"]},{"id":"https://openalex.org/I165143802","display_name":"The University of Queensland","ror":"https://ror.org/00rqy9422","country_code":"AU","type":"education","lineage":["https://openalex.org/I165143802"]},{"id":"https://openalex.org/I98677209","display_name":"University of Edinburgh","ror":"https://ror.org/01nrxwf90","country_code":"GB","type":"education","lineage":["https://openalex.org/I98677209"]}],"countries":["AU","GB"],"is_corresponding":false,"raw_author_name":"Carsten O. Daub","raw_affiliation_strings":["1 Omics Science Center, RIKEN Yokohama Institute, 1-7-22 Suehiro-cho, Tsurumi, Yokohama 230-0045, Japan, 2Expression Genomics Laboratory, Institute for Molecular Bioscience, University of Queensland, QLD, 4072, Australia and 3Roslin Institute, University of Edinburgh, Roslin, Midlothian, EH25 9PS, Scotland, UK"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"1 Omics Science Center, RIKEN Yokohama Institute, 1-7-22 Suehiro-cho, Tsurumi, Yokohama 230-0045, Japan, 2Expression Genomics Laboratory, Institute for Molecular Bioscience, University of Queensland, QLD, 4072, Australia and 3Roslin Institute, University of Edinburgh, Roslin, Midlothian, EH25 9PS, Scotland, UK","institution_ids":["https://openalex.org/I133960621","https://openalex.org/I165143802","https://openalex.org/I98677209"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5032097008","display_name":"Yoshihide Hayashizaki","orcid":"https://orcid.org/0000-0002-0561-2802"},"institutions":[{"id":"https://openalex.org/I133960621","display_name":"Roslin Institute","ror":"https://ror.org/01920rj20","country_code":"GB","type":"facility","lineage":["https://openalex.org/I133960621","https://openalex.org/I2799693246","https://openalex.org/I4210087105","https://openalex.org/I98677209"]},{"id":"https://openalex.org/I165143802","display_name":"The University of Queensland","ror":"https://ror.org/00rqy9422","country_code":"AU","type":"education","lineage":["https://openalex.org/I165143802"]},{"id":"https://openalex.org/I98677209","display_name":"University of Edinburgh","ror":"https://ror.org/01nrxwf90","country_code":"GB","type":"education","lineage":["https://openalex.org/I98677209"]}],"countries":["AU","GB"],"is_corresponding":false,"raw_author_name":"Yoshihide Hayashizaki","raw_affiliation_strings":["1 Omics Science Center, RIKEN Yokohama Institute, 1-7-22 Suehiro-cho, Tsurumi, Yokohama 230-0045, Japan, 2Expression Genomics Laboratory, Institute for Molecular Bioscience, University of Queensland, QLD, 4072, Australia and 3Roslin Institute, University of Edinburgh, Roslin, Midlothian, EH25 9PS, Scotland, UK"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"1 Omics Science Center, RIKEN Yokohama Institute, 1-7-22 Suehiro-cho, Tsurumi, Yokohama 230-0045, Japan, 2Expression Genomics Laboratory, Institute for Molecular Bioscience, University of Queensland, QLD, 4072, Australia and 3Roslin Institute, University of Edinburgh, Roslin, Midlothian, EH25 9PS, Scotland, UK","institution_ids":["https://openalex.org/I133960621","https://openalex.org/I165143802","https://openalex.org/I98677209"]}]},{"author_position":"last","author":{"id":"https://openalex.org/A5040882194","display_name":"Geoffrey J. Faulkner","orcid":"https://orcid.org/0000-0001-5769-4494"},"institutions":[{"id":"https://openalex.org/I133960621","display_name":"Roslin Institute","ror":"https://ror.org/01920rj20","country_code":"GB","type":"facility","lineage":["https://openalex.org/I133960621","https://openalex.org/I2799693246","https://openalex.org/I4210087105","https://openalex.org/I98677209"]},{"id":"https://openalex.org/I165143802","display_name":"The University of Queensland","ror":"https://ror.org/00rqy9422","country_code":"AU","type":"education","lineage":["https://openalex.org/I165143802"]},{"id":"https://openalex.org/I98677209","display_name":"University of Edinburgh","ror":"https://ror.org/01nrxwf90","country_code":"GB","type":"education","lineage":["https://openalex.org/I98677209"]}],"countries":["AU","GB"],"is_corresponding":true,"raw_author_name":"Geoffrey J. Faulkner","raw_affiliation_strings":["1 Omics Science Center, RIKEN Yokohama Institute, 1-7-22 Suehiro-cho, Tsurumi, Yokohama 230-0045, Japan, 2Expression Genomics Laboratory, Institute for Molecular Bioscience, University of Queensland, QLD, 4072, Australia and 3Roslin Institute, University of Edinburgh, Roslin, Midlothian, EH25 9PS, Scotland, UK"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"1 Omics Science Center, RIKEN Yokohama Institute, 1-7-22 Suehiro-cho, Tsurumi, Yokohama 230-0045, Japan, 2Expression Genomics Laboratory, Institute for Molecular Bioscience, University of Queensland, QLD, 4072, Australia and 3Roslin Institute, University of Edinburgh, Roslin, Midlothian, EH25 9PS, Scotland, UK","institution_ids":["https://openalex.org/I133960621","https://openalex.org/I165143802","https://openalex.org/I98677209"]}]}],"institutions":[],"countries_distinct_count":2,"institutions_distinct_count":3,"corresponding_author_ids":["https://openalex.org/A5040882194"],"corresponding_institution_ids":["https://openalex.org/I133960621","https://openalex.org/I165143802","https://openalex.org/I98677209"],"apc_list":{"value":3618,"currency":"USD","value_usd":3618},"apc_paid":null,"fwci":2.2662,"has_fulltext":true,"cited_by_count":46,"citation_normalized_percentile":{"value":0.88125072,"is_in_top_1_percent":false,"is_in_top_10_percent":false},"cited_by_percentile_year":{"min":89,"max":98},"biblio":{"volume":"25","issue":"19","first_page":"2613","last_page":"2614"},"is_retracted":false,"is_paratext":false,"is_xpac":false,"primary_topic":{"id":"https://openalex.org/T10015","display_name":"Genomics and Phylogenetic Studies","score":0.9998000264167786,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},"topics":[{"id":"https://openalex.org/T10015","display_name":"Genomics and Phylogenetic Studies","score":0.9998000264167786,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},{"id":"https://openalex.org/T10515","display_name":"Cancer-related molecular mechanisms research","score":0.980400025844574,"subfield":{"id":"https://openalex.org/subfields/1306","display_name":"Cancer Research"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},{"id":"https://openalex.org/T11970","display_name":"Molecular Biology Techniques and Applications","score":0.9632999897003174,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}}],"keywords":[{"id":"https://openalex.org/keywords/python","display_name":"Python (programming language)","score":0.7360985279083252},{"id":"https://openalex.org/keywords/executable","display_name":"Executable","score":0.7336404323577881},{"id":"https://openalex.org/keywords/computer-science","display_name":"Computer science","score":0.7251113653182983},{"id":"https://openalex.org/keywords/software","display_name":"Software","score":0.6549895405769348},{"id":"https://openalex.org/keywords/documentation","display_name":"Documentation","score":0.6493156552314758},{"id":"https://openalex.org/keywords/massive-parallel-sequencing","display_name":"Massive parallel sequencing","score":0.5494375824928284},{"id":"https://openalex.org/keywords/probabilistic-logic","display_name":"Probabilistic logic","score":0.5100720524787903},{"id":"https://openalex.org/keywords/massively-parallel","display_name":"Massively parallel","score":0.4259328246116638},{"id":"https://openalex.org/keywords/dna-sequencing","display_name":"DNA sequencing","score":0.4176889657974243},{"id":"https://openalex.org/keywords/data-mining","display_name":"Data mining","score":0.38259685039520264},{"id":"https://openalex.org/keywords/programming-language","display_name":"Programming language","score":0.2583426237106323},{"id":"https://openalex.org/keywords/operating-system","display_name":"Operating system","score":0.20127946138381958},{"id":"https://openalex.org/keywords/biology","display_name":"Biology","score":0.16855990886688232},{"id":"https://openalex.org/keywords/artificial-intelligence","display_name":"Artificial intelligence","score":0.1595732569694519},{"id":"https://openalex.org/keywords/genetics","display_name":"Genetics","score":0.11061379313468933}],"concepts":[{"id":"https://openalex.org/C519991488","wikidata":"https://www.wikidata.org/wiki/Q28865","display_name":"Python (programming language)","level":2,"score":0.7360985279083252},{"id":"https://openalex.org/C160145156","wikidata":"https://www.wikidata.org/wiki/Q778586","display_name":"Executable","level":2,"score":0.7336404323577881},{"id":"https://openalex.org/C41008148","wikidata":"https://www.wikidata.org/wiki/Q21198","display_name":"Computer science","level":0,"score":0.7251113653182983},{"id":"https://openalex.org/C2777904410","wikidata":"https://www.wikidata.org/wiki/Q7397","display_name":"Software","level":2,"score":0.6549895405769348},{"id":"https://openalex.org/C56666940","wikidata":"https://www.wikidata.org/wiki/Q788790","display_name":"Documentation","level":2,"score":0.6493156552314758},{"id":"https://openalex.org/C192800701","wikidata":"https://www.wikidata.org/wiki/Q6784807","display_name":"Massive parallel sequencing","level":4,"score":0.5494375824928284},{"id":"https://openalex.org/C49937458","wikidata":"https://www.wikidata.org/wiki/Q2599292","display_name":"Probabilistic logic","level":2,"score":0.5100720524787903},{"id":"https://openalex.org/C190475519","wikidata":"https://www.wikidata.org/wiki/Q544384","display_name":"Massively parallel","level":2,"score":0.4259328246116638},{"id":"https://openalex.org/C51679486","wikidata":"https://www.wikidata.org/wiki/Q380546","display_name":"DNA sequencing","level":3,"score":0.4176889657974243},{"id":"https://openalex.org/C124101348","wikidata":"https://www.wikidata.org/wiki/Q172491","display_name":"Data mining","level":1,"score":0.38259685039520264},{"id":"https://openalex.org/C199360897","wikidata":"https://www.wikidata.org/wiki/Q9143","display_name":"Programming language","level":1,"score":0.2583426237106323},{"id":"https://openalex.org/C111919701","wikidata":"https://www.wikidata.org/wiki/Q9135","display_name":"Operating system","level":1,"score":0.20127946138381958},{"id":"https://openalex.org/C86803240","wikidata":"https://www.wikidata.org/wiki/Q420","display_name":"Biology","level":0,"score":0.16855990886688232},{"id":"https://openalex.org/C154945302","wikidata":"https://www.wikidata.org/wiki/Q11660","display_name":"Artificial intelligence","level":1,"score":0.1595732569694519},{"id":"https://openalex.org/C54355233","wikidata":"https://www.wikidata.org/wiki/Q7162","display_name":"Genetics","level":1,"score":0.11061379313468933},{"id":"https://openalex.org/C552990157","wikidata":"https://www.wikidata.org/wiki/Q7430","display_name":"DNA","level":2,"score":0.0}],"mesh":[{"descriptor_ui":"D012984","descriptor_name":"Software","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D012984","descriptor_name":"Software","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D012984","descriptor_name":"Software","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D017422","descriptor_name":"Sequence Analysis, DNA","qualifier_ui":"Q000379","qualifier_name":"methods","is_major_topic":false},{"descriptor_ui":"D017422","descriptor_name":"Sequence Analysis, DNA","qualifier_ui":"Q000379","qualifier_name":"methods","is_major_topic":false},{"descriptor_ui":"D017422","descriptor_name":"Sequence Analysis, DNA","qualifier_ui":"Q000379","qualifier_name":"methods","is_major_topic":false},{"descriptor_ui":"D019295","descriptor_name":"Computational Biology","qualifier_ui":"Q000379","qualifier_name":"methods","is_major_topic":false},{"descriptor_ui":"D019295","descriptor_name":"Computational Biology","qualifier_ui":"Q000379","qualifier_name":"methods","is_major_topic":false},{"descriptor_ui":"D019295","descriptor_name":"Computational Biology","qualifier_ui":"Q000379","qualifier_name":"methods","is_major_topic":false}],"locations_count":3,"locations":[{"id":"doi:10.1093/bioinformatics/btp438","is_oa":true,"landing_page_url":"https://doi.org/10.1093/bioinformatics/btp438","pdf_url":"https://academic.oup.com/bioinformatics/article-pdf/25/19/2613/48995677/bioinformatics_25_19_2613.pdf","source":{"id":"https://openalex.org/S52395412","display_name":"Bioinformatics","issn_l":"1367-4803","issn":["1367-4803","1367-4811"],"is_oa":false,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310311648","host_organization_name":"Oxford University Press","host_organization_lineage":["https://openalex.org/P4310311648","https://openalex.org/P4310311647"],"host_organization_lineage_names":["Oxford University Press","University of Oxford"],"type":"journal"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Bioinformatics","raw_type":"journal-article"},{"id":"pmid:19605420","is_oa":false,"landing_page_url":"https://pubmed.ncbi.nlm.nih.gov/19605420","pdf_url":null,"source":{"id":"https://openalex.org/S4306525036","display_name":"PubMed","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I1299303238","host_organization_name":"National Institutes of Health","host_organization_lineage":["https://openalex.org/I1299303238"],"host_organization_lineage_names":[],"type":"repository"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Bioinformatics (Oxford, England)","raw_type":null},{"id":"pmh:oai:espace.library.uq.edu.au:UQ:185887","is_oa":false,"landing_page_url":null,"pdf_url":null,"source":{"id":"https://openalex.org/S4306402388","display_name":"Queensland's institutional digital repository (The University of Queensland)","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I165143802","host_organization_name":"The University of Queensland","host_organization_lineage":["https://openalex.org/I165143802"],"host_organization_lineage_names":[],"type":"repository"},"license":null,"license_id":null,"version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":"","raw_type":"Journal Article"}],"best_oa_location":{"id":"doi:10.1093/bioinformatics/btp438","is_oa":true,"landing_page_url":"https://doi.org/10.1093/bioinformatics/btp438","pdf_url":"https://academic.oup.com/bioinformatics/article-pdf/25/19/2613/48995677/bioinformatics_25_19_2613.pdf","source":{"id":"https://openalex.org/S52395412","display_name":"Bioinformatics","issn_l":"1367-4803","issn":["1367-4803","1367-4811"],"is_oa":false,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310311648","host_organization_name":"Oxford University Press","host_organization_lineage":["https://openalex.org/P4310311648","https://openalex.org/P4310311647"],"host_organization_lineage_names":["Oxford University Press","University of Oxford"],"type":"journal"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Bioinformatics","raw_type":"journal-article"},"sustainable_development_goals":[],"awards":[],"funders":[{"id":"https://openalex.org/F4320320912","display_name":"Ministry of Education, Culture, Sports, Science and Technology","ror":"https://ror.org/048rj2z13"},{"id":"https://openalex.org/F4320334626","display_name":"Medical Research Council","ror":"https://ror.org/03x94j517"},{"id":"https://openalex.org/F4320334705","display_name":"National Health and Medical Research Council","ror":"https://ror.org/011kf5r70"},{"id":"https://openalex.org/F4320335125","display_name":"RIKEN","ror":"https://ror.org/01sjwvz98"}],"has_content":{"grobid_xml":true,"pdf":true},"content_urls":{"pdf":"https://content.openalex.org/works/W2103358399.pdf","grobid_xml":"https://content.openalex.org/works/W2103358399.grobid-xml"},"referenced_works_count":8,"referenced_works":["https://openalex.org/W1973831834","https://openalex.org/W2007771322","https://openalex.org/W2047285578","https://openalex.org/W2057692691","https://openalex.org/W2059699217","https://openalex.org/W2102304447","https://openalex.org/W2105776281","https://openalex.org/W2154431984"],"related_works":["https://openalex.org/W2596828944","https://openalex.org/W2887244195","https://openalex.org/W4390966252","https://openalex.org/W2045300430","https://openalex.org/W2522810657","https://openalex.org/W4383426117","https://openalex.org/W3082388066","https://openalex.org/W2755819208","https://openalex.org/W2147753608","https://openalex.org/W2343109370"],"abstract_inverted_index":{"UNLABELLED:":[0],"Multi-mapping":[1],"sequence":[2],"tags":[3,13,53],"are":[4,14,70],"a":[5,31],"significant":[6],"impediment":[7],"to":[8,21,49],"short-read":[9],"sequencing":[10,47],"platforms.":[11],"These":[12],"routinely":[15],"omitted":[16],"from":[17,72],"further":[18],"analysis,":[19],"leading":[20],"experimental":[22],"bias":[23],"and":[24,68],"reduced":[25],"coverage.":[26],"Here,":[27],"we":[28],"present":[29],"MuMRescueLite,":[30],"low-resource":[32],"requirement":[33],"version":[34],"of":[35],"the":[36],"MuMRescue":[37],"software":[38],"that":[39],"has":[40],"been":[41],"used":[42],"by":[43],"several":[44],"next":[45],"generation":[46],"projects":[48],"probabilistically":[50],"reincorporate":[51],"multi-mapping":[52],"into":[54],"mapped":[55],"short":[56],"read":[57],"data.":[58],"AVAILABILITY":[59],"AND":[60],"IMPLEMENTATION:":[61],"MuMRescueLite":[62],"is":[63],"written":[64],"in":[65],"Python;":[66],"executables":[67],"documentation":[69],"available":[71],"http://genome.gsc.riken.jp/osc/english/software/.":[73]},"counts_by_year":[{"year":2025,"cited_by_count":1},{"year":2024,"cited_by_count":1},{"year":2023,"cited_by_count":1},{"year":2022,"cited_by_count":3},{"year":2021,"cited_by_count":3},{"year":2020,"cited_by_count":2},{"year":2019,"cited_by_count":1},{"year":2018,"cited_by_count":4},{"year":2017,"cited_by_count":3},{"year":2015,"cited_by_count":2},{"year":2014,"cited_by_count":4},{"year":2013,"cited_by_count":3},{"year":2012,"cited_by_count":2}],"updated_date":"2026-07-22T07:51:19.307946","created_date":"2025-10-10T00:00:00"}
