{"id":"https://openalex.org/W2134196182","doi":"https://doi.org/10.1093/bioinformatics/btp381","title":"FancyGene: dynamic visualization of gene structures and protein domain architectures on genomic loci","display_name":"FancyGene: dynamic visualization of gene structures and protein domain architectures on genomic loci","publication_year":2009,"publication_date":"2009-06-19","ids":{"openalex":"https://openalex.org/W2134196182","doi":"https://doi.org/10.1093/bioinformatics/btp381","mag":"2134196182","pmid":"https://pubmed.ncbi.nlm.nih.gov/19542150"},"language":"en","primary_location":{"id":"doi:10.1093/bioinformatics/btp381","is_oa":true,"landing_page_url":"https://doi.org/10.1093/bioinformatics/btp381","pdf_url":"https://academic.oup.com/bioinformatics/article-pdf/25/17/2281/555357/btp381.pdf","source":{"id":"https://openalex.org/S52395412","display_name":"Bioinformatics","issn_l":"1367-4803","issn":["1367-4803","1367-4811"],"is_oa":false,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310311648","host_organization_name":"Oxford University Press","host_organization_lineage":["https://openalex.org/P4310311648","https://openalex.org/P4310311647"],"host_organization_lineage_names":["Oxford University Press","University of Oxford"],"type":"journal"},"license":"cc-by-nc","license_id":"https://openalex.org/licenses/cc-by-nc","version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Bioinformatics","raw_type":"journal-article"},"type":"article","indexed_in":["crossref","doaj","pubmed"],"open_access":{"is_oa":true,"oa_status":"hybrid","oa_url":"https://academic.oup.com/bioinformatics/article-pdf/25/17/2281/555357/btp381.pdf","any_repository_has_fulltext":true},"authorships":[{"author_position":"first","author":{"id":"https://openalex.org/A5048107260","display_name":"Davide Rambaldi","orcid":null},"institutions":[{"id":"https://openalex.org/I6141010","display_name":"European Institute of Oncology","ror":"https://ror.org/02vr0ne26","country_code":"IT","type":"healthcare","lineage":["https://openalex.org/I4210153126","https://openalex.org/I6141010"]}],"countries":["IT"],"is_corresponding":false,"raw_author_name":"Davide Rambaldi","raw_affiliation_strings":["Department of Experimental Oncology, European Institute of Oncology, IFOM-IEO Campus, Via Adamello 16, 20139 Milan, Italy"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Department of Experimental Oncology, European Institute of Oncology, IFOM-IEO Campus, Via Adamello 16, 20139 Milan, Italy","institution_ids":["https://openalex.org/I6141010"]}]},{"author_position":"last","author":{"id":"https://openalex.org/A5028555570","display_name":"Francesca D. Ciccarelli","orcid":"https://orcid.org/0000-0002-9325-0900"},"institutions":[{"id":"https://openalex.org/I6141010","display_name":"European Institute of Oncology","ror":"https://ror.org/02vr0ne26","country_code":"IT","type":"healthcare","lineage":["https://openalex.org/I4210153126","https://openalex.org/I6141010"]}],"countries":["IT"],"is_corresponding":true,"raw_author_name":"Francesca D. Ciccarelli","raw_affiliation_strings":["Department of Experimental Oncology, European Institute of Oncology, IFOM-IEO Campus, Via Adamello 16, 20139 Milan, Italy"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Department of Experimental Oncology, European Institute of Oncology, IFOM-IEO Campus, Via Adamello 16, 20139 Milan, Italy","institution_ids":["https://openalex.org/I6141010"]}]}],"institutions":[],"countries_distinct_count":1,"institutions_distinct_count":1,"corresponding_author_ids":["https://openalex.org/A5028555570"],"corresponding_institution_ids":["https://openalex.org/I6141010"],"apc_list":{"value":3989,"currency":"USD","value_usd":3989},"apc_paid":{"value":3989,"currency":"USD","value_usd":3989},"fwci":1.2831,"has_fulltext":true,"cited_by_count":103,"citation_normalized_percentile":{"value":0.7926499,"is_in_top_1_percent":false,"is_in_top_10_percent":false},"cited_by_percentile_year":{"min":88,"max":100},"biblio":{"volume":"25","issue":"17","first_page":"2281","last_page":"2282"},"is_retracted":false,"is_paratext":false,"is_xpac":false,"primary_topic":{"id":"https://openalex.org/T10887","display_name":"Bioinformatics and Genomic Networks","score":0.9987000226974487,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},"topics":[{"id":"https://openalex.org/T10887","display_name":"Bioinformatics and Genomic Networks","score":0.9987000226974487,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},{"id":"https://openalex.org/T10015","display_name":"Genomics and Phylogenetic Studies","score":0.9984999895095825,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},{"id":"https://openalex.org/T10885","display_name":"Gene expression and cancer classification","score":0.9977999925613403,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}}],"keywords":[{"id":"https://openalex.org/keywords/computer-science","display_name":"Computer science","score":0.720231294631958},{"id":"https://openalex.org/keywords/graphics","display_name":"Graphics","score":0.6922050714492798},{"id":"https://openalex.org/keywords/computer-graphics","display_name":"Computer graphics","score":0.6165523529052734},{"id":"https://openalex.org/keywords/visualization","display_name":"Visualization","score":0.6052206754684448},{"id":"https://openalex.org/keywords/variety","display_name":"Variety (cybernetics)","score":0.4888395667076111},{"id":"https://openalex.org/keywords/representation","display_name":"Representation (politics)","score":0.45801275968551636},{"id":"https://openalex.org/keywords/computer-graphics","display_name":"Computer graphics (images)","score":0.4495755434036255},{"id":"https://openalex.org/keywords/domain","display_name":"Domain (mathematical analysis)","score":0.44836801290512085},{"id":"https://openalex.org/keywords/world-wide-web","display_name":"World Wide Web","score":0.3693537414073944},{"id":"https://openalex.org/keywords/information-retrieval","display_name":"Information retrieval","score":0.34485745429992676},{"id":"https://openalex.org/keywords/artificial-intelligence","display_name":"Artificial intelligence","score":0.2405003011226654}],"concepts":[{"id":"https://openalex.org/C41008148","wikidata":"https://www.wikidata.org/wiki/Q21198","display_name":"Computer science","level":0,"score":0.720231294631958},{"id":"https://openalex.org/C21442007","wikidata":"https://www.wikidata.org/wiki/Q1027879","display_name":"Graphics","level":2,"score":0.6922050714492798},{"id":"https://openalex.org/C77660652","wikidata":"https://www.wikidata.org/wiki/Q150971","display_name":"Computer graphics","level":2,"score":0.6165523529052734},{"id":"https://openalex.org/C36464697","wikidata":"https://www.wikidata.org/wiki/Q451553","display_name":"Visualization","level":2,"score":0.6052206754684448},{"id":"https://openalex.org/C136197465","wikidata":"https://www.wikidata.org/wiki/Q1729295","display_name":"Variety (cybernetics)","level":2,"score":0.4888395667076111},{"id":"https://openalex.org/C2776359362","wikidata":"https://www.wikidata.org/wiki/Q2145286","display_name":"Representation (politics)","level":3,"score":0.45801275968551636},{"id":"https://openalex.org/C121684516","wikidata":"https://www.wikidata.org/wiki/Q7600677","display_name":"Computer graphics (images)","level":1,"score":0.4495755434036255},{"id":"https://openalex.org/C36503486","wikidata":"https://www.wikidata.org/wiki/Q11235244","display_name":"Domain (mathematical analysis)","level":2,"score":0.44836801290512085},{"id":"https://openalex.org/C136764020","wikidata":"https://www.wikidata.org/wiki/Q466","display_name":"World Wide Web","level":1,"score":0.3693537414073944},{"id":"https://openalex.org/C23123220","wikidata":"https://www.wikidata.org/wiki/Q816826","display_name":"Information retrieval","level":1,"score":0.34485745429992676},{"id":"https://openalex.org/C154945302","wikidata":"https://www.wikidata.org/wiki/Q11660","display_name":"Artificial intelligence","level":1,"score":0.2405003011226654},{"id":"https://openalex.org/C94625758","wikidata":"https://www.wikidata.org/wiki/Q7163","display_name":"Politics","level":2,"score":0.0},{"id":"https://openalex.org/C33923547","wikidata":"https://www.wikidata.org/wiki/Q395","display_name":"Mathematics","level":0,"score":0.0},{"id":"https://openalex.org/C199539241","wikidata":"https://www.wikidata.org/wiki/Q7748","display_name":"Law","level":1,"score":0.0},{"id":"https://openalex.org/C17744445","wikidata":"https://www.wikidata.org/wiki/Q36442","display_name":"Political science","level":0,"score":0.0},{"id":"https://openalex.org/C134306372","wikidata":"https://www.wikidata.org/wiki/Q7754","display_name":"Mathematical analysis","level":1,"score":0.0}],"mesh":[{"descriptor_ui":"D005796","descriptor_name":"Genes","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D005796","descriptor_name":"Genes","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D005796","descriptor_name":"Genes","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D005796","descriptor_name":"Genes","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D006801","descriptor_name":"Humans","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D006801","descriptor_name":"Humans","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D006801","descriptor_name":"Humans","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D006801","descriptor_name":"Humans","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D012984","descriptor_name":"Software","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D012984","descriptor_name":"Software","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D012984","descriptor_name":"Software","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D012984","descriptor_name":"Software","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D017434","descriptor_name":"Protein Structure, Tertiary","qualifier_ui":"Q000235","qualifier_name":"genetics","is_major_topic":false},{"descriptor_ui":"D017434","descriptor_name":"Protein Structure, Tertiary","qualifier_ui":"Q000235","qualifier_name":"genetics","is_major_topic":false},{"descriptor_ui":"D017434","descriptor_name":"Protein Structure, Tertiary","qualifier_ui":"Q000235","qualifier_name":"genetics","is_major_topic":false},{"descriptor_ui":"D017434","descriptor_name":"Protein Structure, Tertiary","qualifier_ui":"Q000235","qualifier_name":"genetics","is_major_topic":false},{"descriptor_ui":"D019295","descriptor_name":"Computational Biology","qualifier_ui":"Q000379","qualifier_name":"methods","is_major_topic":false},{"descriptor_ui":"D019295","descriptor_name":"Computational Biology","qualifier_ui":"Q000379","qualifier_name":"methods","is_major_topic":false},{"descriptor_ui":"D019295","descriptor_name":"Computational Biology","qualifier_ui":"Q000379","qualifier_name":"methods","is_major_topic":false},{"descriptor_ui":"D019295","descriptor_name":"Computational Biology","qualifier_ui":"Q000379","qualifier_name":"methods","is_major_topic":false},{"descriptor_ui":"D020407","descriptor_name":"Internet","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D020407","descriptor_name":"Internet","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D020407","descriptor_name":"Internet","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D020407","descriptor_name":"Internet","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false}],"locations_count":5,"locations":[{"id":"doi:10.1093/bioinformatics/btp381","is_oa":true,"landing_page_url":"https://doi.org/10.1093/bioinformatics/btp381","pdf_url":"https://academic.oup.com/bioinformatics/article-pdf/25/17/2281/555357/btp381.pdf","source":{"id":"https://openalex.org/S52395412","display_name":"Bioinformatics","issn_l":"1367-4803","issn":["1367-4803","1367-4811"],"is_oa":false,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310311648","host_organization_name":"Oxford University Press","host_organization_lineage":["https://openalex.org/P4310311648","https://openalex.org/P4310311647"],"host_organization_lineage_names":["Oxford University Press","University of Oxford"],"type":"journal"},"license":"cc-by-nc","license_id":"https://openalex.org/licenses/cc-by-nc","version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Bioinformatics","raw_type":"journal-article"},{"id":"pmid:19542150","is_oa":false,"landing_page_url":"https://pubmed.ncbi.nlm.nih.gov/19542150","pdf_url":null,"source":{"id":"https://openalex.org/S4306525036","display_name":"PubMed","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I1299303238","host_organization_name":"National Institutes of Health","host_organization_lineage":["https://openalex.org/I1299303238"],"host_organization_lineage_names":[],"type":"repository"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Bioinformatics (Oxford, England)","raw_type":"Journal Article"},{"id":"pmh:oai:kclpure.kcl.ac.uk:openaire/772ef7ec-fcca-4402-83d8-2e28152a0569","is_oa":true,"landing_page_url":"https://kclpure.kcl.ac.uk/portal/en/publications/772ef7ec-fcca-4402-83d8-2e28152a0569","pdf_url":null,"source":{"id":"https://openalex.org/S4306400216","display_name":"Research Portal (King's College London)","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I183935753","host_organization_name":"King's College London","host_organization_lineage":["https://openalex.org/I183935753"],"host_organization_lineage_names":[],"type":"repository"},"license":"other-oa","license_id":"https://openalex.org/licenses/other-oa","version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Rambaldi, D & Ciccarelli, F D 2009, 'FancyGene : dynamic visualization of gene structures and protein domain architectures on genomic loci', BIOINFORMATICS, vol. 25, no. 17, N/A, pp. 2281-2282. https://doi.org/10.1093/bioinformatics/btp381","raw_type":"info:eu-repo/semantics/publishedVersion"},{"id":"pmh:oai:air.unimi.it:2434/1249246","is_oa":true,"landing_page_url":"https://hdl.handle.net/2434/1249246","pdf_url":"https://air.unimi.it/bitstream/2434/1249246/1/Bioinformatics-2009-Rambaldi-2281-2.pdf","source":{"id":"https://openalex.org/S4306400516","display_name":"Archivio Istituzionale della Ricerca (Universita Degli Studi Di Milano)","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I189158943","host_organization_name":"University of Milan","host_organization_lineage":["https://openalex.org/I189158943"],"host_organization_lineage_names":[],"type":"repository"},"license":"cc-by-nc","license_id":"https://openalex.org/licenses/cc-by-nc","version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":null,"raw_type":"info:eu-repo/semantics/article"},{"id":"pmh:oai:pubmedcentral.nih.gov:2734320","is_oa":true,"landing_page_url":"https://www.ncbi.nlm.nih.gov/pmc/articles/2734320","pdf_url":null,"source":{"id":"https://openalex.org/S2764455111","display_name":"PubMed Central","issn_l":null,"issn":null,"is_oa":true,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I1299303238","host_organization_name":"National Institutes of Health","host_organization_lineage":["https://openalex.org/I1299303238"],"host_organization_lineage_names":[],"type":"repository"},"license":null,"license_id":null,"version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":"Bioinformatics","raw_type":"Text"}],"best_oa_location":{"id":"doi:10.1093/bioinformatics/btp381","is_oa":true,"landing_page_url":"https://doi.org/10.1093/bioinformatics/btp381","pdf_url":"https://academic.oup.com/bioinformatics/article-pdf/25/17/2281/555357/btp381.pdf","source":{"id":"https://openalex.org/S52395412","display_name":"Bioinformatics","issn_l":"1367-4803","issn":["1367-4803","1367-4811"],"is_oa":false,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310311648","host_organization_name":"Oxford University Press","host_organization_lineage":["https://openalex.org/P4310311648","https://openalex.org/P4310311647"],"host_organization_lineage_names":["Oxford University Press","University of Oxford"],"type":"journal"},"license":"cc-by-nc","license_id":"https://openalex.org/licenses/cc-by-nc","version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Bioinformatics","raw_type":"journal-article"},"sustainable_development_goals":[],"awards":[],"funders":[{"id":"https://openalex.org/F4320323054","display_name":"Associazione Italiana per la Ricerca sul Cancro","ror":"https://ror.org/02g2x7380"}],"has_content":{"grobid_xml":true,"pdf":true},"content_urls":{"pdf":"https://content.openalex.org/works/W2134196182.pdf","grobid_xml":"https://content.openalex.org/works/W2134196182.grobid-xml"},"referenced_works_count":13,"referenced_works":["https://openalex.org/W2008116827","https://openalex.org/W2096525273","https://openalex.org/W2114049512","https://openalex.org/W2137297899","https://openalex.org/W2141885858","https://openalex.org/W2151758821","https://openalex.org/W2155144061","https://openalex.org/W2168783124","https://openalex.org/W2740984310","https://openalex.org/W4210241463","https://openalex.org/W4210323379","https://openalex.org/W4250297812","https://openalex.org/W6806866965"],"related_works":["https://openalex.org/W2032233321","https://openalex.org/W3121970507","https://openalex.org/W2110028391","https://openalex.org/W54497855","https://openalex.org/W2068608913","https://openalex.org/W217960748","https://openalex.org/W3125814499","https://openalex.org/W2090827041","https://openalex.org/W2094012830","https://openalex.org/W1980956817"],"abstract_inverted_index":{"Abstract":[0],"Summary:":[1],"FancyGene":[2,31,65],"is":[3,46,66],"a":[4,26,37,58],"fast":[5],"and":[6,80,82,104,138,145],"user-friendly":[7],"web-based":[8],"tool":[9],"for":[10,108,114],"producing":[11],"images":[12,89],"of":[13,28,36,60],"one":[14],"or":[15,98],"more":[16],"genes":[17],"directly":[18],"on":[19],"the":[20,33,43,48,70,74],"corresponding":[21],"genomic":[22],"locus.":[23],"Starting":[24],"from":[25],"variety":[27,59],"input":[29],"formats,":[30],"rebuilds":[32],"basic":[34],"components":[35],"gene":[38],"(UTRs,":[39],"intron,":[40],"exons).":[41],"Once":[42],"initial":[44],"representation":[45],"obtained,":[47],"user":[49,71],"can":[50,105,140],"superimpose":[51],"additional":[52],"features\u2014such":[53],"as":[54,111,113],"protein":[55],"domains":[56],"and/or":[57,84],"biological":[61],"markers\u2014in":[62],"specific":[63],"positions.":[64],"extremely":[67],"flexible":[68],"allowing":[69,122],"to":[72],"change":[73],"resulting":[75],"image":[76],"dynamically,":[77],"modifying":[78],"colors":[79],"shapes":[81],"adding":[83],"removing":[85],"objects.":[86],"The":[87,116],"output":[88],"are":[90],"generated":[91],"either":[92],"in":[93],"portable":[94,99],"network":[95],"graphics":[96,128],"(PNG)":[97],"document":[100],"format":[101,118],"(PDF)":[102],"formats":[103],"be":[106,141],"used":[107],"scientific":[109],"presentations":[110],"well":[112],"publications.":[115],"PDF":[117],"preserves":[119],"editing":[120],"capabilities,":[121],"picture":[123],"modification":[124],"using":[125],"any":[126],"vector":[127],"editor.":[129],"Availability:":[130],"http://bio.ifom-ieo-campus.it/fancygene":[131],"Contact:":[132],"francesca.ciccarelli@ifom-ieo-campus.it":[133],"Supplementary":[134],"Information:":[135],"Details,":[136],"examples":[137],"tutorials":[139],"found":[142],"at":[143],"http://bio.ifom-ieo-campus.it/fancygene/tutorial.html":[144],"http://bio.ifom-ieo-campus.it/fancygene/help.html":[146]},"counts_by_year":[{"year":2026,"cited_by_count":1},{"year":2023,"cited_by_count":1},{"year":2022,"cited_by_count":1},{"year":2021,"cited_by_count":1},{"year":2020,"cited_by_count":2},{"year":2019,"cited_by_count":2},{"year":2018,"cited_by_count":4},{"year":2017,"cited_by_count":12},{"year":2016,"cited_by_count":18},{"year":2015,"cited_by_count":17},{"year":2014,"cited_by_count":17},{"year":2013,"cited_by_count":17},{"year":2012,"cited_by_count":7}],"updated_date":"2026-08-27T14:10:00.468798","created_date":"2025-10-10T00:00:00"}
