{"id":"https://openalex.org/W2152246890","doi":"https://doi.org/10.1093/bioinformatics/btp379","title":"SHREC: a short-read error correction method","display_name":"SHREC: a short-read error correction method","publication_year":2009,"publication_date":"2009-06-19","ids":{"openalex":"https://openalex.org/W2152246890","doi":"https://doi.org/10.1093/bioinformatics/btp379","mag":"2152246890","pmid":"https://pubmed.ncbi.nlm.nih.gov/19542152"},"language":"en","primary_location":{"id":"doi:10.1093/bioinformatics/btp379","is_oa":true,"landing_page_url":"https://doi.org/10.1093/bioinformatics/btp379","pdf_url":"https://academic.oup.com/bioinformatics/article-pdf/25/17/2157/48995124/bioinformatics_25_17_2157.pdf","source":{"id":"https://openalex.org/S52395412","display_name":"Bioinformatics","issn_l":"1367-4803","issn":["1367-4803","1367-4811"],"is_oa":false,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310311648","host_organization_name":"Oxford University Press","host_organization_lineage":["https://openalex.org/P4310311648","https://openalex.org/P4310311647"],"host_organization_lineage_names":["Oxford University Press","University of Oxford"],"type":"journal"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Bioinformatics","raw_type":"journal-article"},"type":"article","indexed_in":["crossref","doaj","pubmed"],"open_access":{"is_oa":true,"oa_status":"bronze","oa_url":"https://academic.oup.com/bioinformatics/article-pdf/25/17/2157/48995124/bioinformatics_25_17_2157.pdf","any_repository_has_fulltext":true},"authorships":[{"author_position":"first","author":{"id":"https://openalex.org/A5108605263","display_name":"Jan Schr\u00f6der","orcid":"https://orcid.org/0000-0001-5270-0605"},"institutions":[{"id":"https://openalex.org/I165779595","display_name":"The University of Melbourne","ror":"https://ror.org/01ej9dk98","country_code":"AU","type":"education","lineage":["https://openalex.org/I165779595"]},{"id":"https://openalex.org/I172675005","display_name":"Nanyang Technological University","ror":"https://ror.org/02e7b5302","country_code":"SG","type":"education","lineage":["https://openalex.org/I172675005"]},{"id":"https://openalex.org/I82951845","display_name":"RMIT University","ror":"https://ror.org/04ttjf776","country_code":"AU","type":"education","lineage":["https://openalex.org/I82951845"]}],"countries":["AU","SG"],"is_corresponding":true,"raw_author_name":"Jan Schr\u00f6der","raw_affiliation_strings":["1 Institut f\u00fcr Informatik, Christian-Albrecht-Universit\u00e4t Kiel, Herman-Rodewald-Strasse 3, 24118 Kiel, Germany, 2 School of Computer Science and Information Technology, RMIT University, Victoria 3000, 3 Department of Computer Science and Software Engineering, University of Melbourne, Victoria 3010, Australia and 4 School of Computer Engineering, Nanyang Technological University, Singapore 639798"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"1 Institut f\u00fcr Informatik, Christian-Albrecht-Universit\u00e4t Kiel, Herman-Rodewald-Strasse 3, 24118 Kiel, Germany, 2 School of Computer Science and Information Technology, RMIT University, Victoria 3000, 3 Department of Computer Science and Software Engineering, University of Melbourne, Victoria 3010, Australia and 4 School of Computer Engineering, Nanyang Technological University, Singapore 639798","institution_ids":["https://openalex.org/I165779595","https://openalex.org/I172675005","https://openalex.org/I82951845"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5111456432","display_name":"Heiko Schr\u00f6der","orcid":null},"institutions":[{"id":"https://openalex.org/I165779595","display_name":"The University of Melbourne","ror":"https://ror.org/01ej9dk98","country_code":"AU","type":"education","lineage":["https://openalex.org/I165779595"]},{"id":"https://openalex.org/I172675005","display_name":"Nanyang Technological University","ror":"https://ror.org/02e7b5302","country_code":"SG","type":"education","lineage":["https://openalex.org/I172675005"]},{"id":"https://openalex.org/I82951845","display_name":"RMIT University","ror":"https://ror.org/04ttjf776","country_code":"AU","type":"education","lineage":["https://openalex.org/I82951845"]}],"countries":["AU","SG"],"is_corresponding":false,"raw_author_name":"Heiko Schr\u00f6der","raw_affiliation_strings":["1 Institut f\u00fcr Informatik, Christian-Albrecht-Universit\u00e4t Kiel, Herman-Rodewald-Strasse 3, 24118 Kiel, Germany, 2 School of Computer Science and Information Technology, RMIT University, Victoria 3000, 3 Department of Computer Science and Software Engineering, University of Melbourne, Victoria 3010, Australia and 4 School of Computer Engineering, Nanyang Technological University, Singapore 639798"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"1 Institut f\u00fcr Informatik, Christian-Albrecht-Universit\u00e4t Kiel, Herman-Rodewald-Strasse 3, 24118 Kiel, Germany, 2 School of Computer Science and Information Technology, RMIT University, Victoria 3000, 3 Department of Computer Science and Software Engineering, University of Melbourne, Victoria 3010, Australia and 4 School of Computer Engineering, Nanyang Technological University, Singapore 639798","institution_ids":["https://openalex.org/I165779595","https://openalex.org/I172675005","https://openalex.org/I82951845"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5021097696","display_name":"Simon J. Puglisi","orcid":"https://orcid.org/0000-0001-7668-7636"},"institutions":[{"id":"https://openalex.org/I165779595","display_name":"The University of Melbourne","ror":"https://ror.org/01ej9dk98","country_code":"AU","type":"education","lineage":["https://openalex.org/I165779595"]},{"id":"https://openalex.org/I172675005","display_name":"Nanyang Technological University","ror":"https://ror.org/02e7b5302","country_code":"SG","type":"education","lineage":["https://openalex.org/I172675005"]},{"id":"https://openalex.org/I82951845","display_name":"RMIT University","ror":"https://ror.org/04ttjf776","country_code":"AU","type":"education","lineage":["https://openalex.org/I82951845"]}],"countries":["AU","SG"],"is_corresponding":false,"raw_author_name":"Simon J. Puglisi","raw_affiliation_strings":["1 Institut f\u00fcr Informatik, Christian-Albrecht-Universit\u00e4t Kiel, Herman-Rodewald-Strasse 3, 24118 Kiel, Germany, 2 School of Computer Science and Information Technology, RMIT University, Victoria 3000, 3 Department of Computer Science and Software Engineering, University of Melbourne, Victoria 3010, Australia and 4 School of Computer Engineering, Nanyang Technological University, Singapore 639798"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"1 Institut f\u00fcr Informatik, Christian-Albrecht-Universit\u00e4t Kiel, Herman-Rodewald-Strasse 3, 24118 Kiel, Germany, 2 School of Computer Science and Information Technology, RMIT University, Victoria 3000, 3 Department of Computer Science and Software Engineering, University of Melbourne, Victoria 3010, Australia and 4 School of Computer Engineering, Nanyang Technological University, Singapore 639798","institution_ids":["https://openalex.org/I165779595","https://openalex.org/I172675005","https://openalex.org/I82951845"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5101502254","display_name":"Ranjan Sinha","orcid":"https://orcid.org/0000-0003-2485-8549"},"institutions":[{"id":"https://openalex.org/I165779595","display_name":"The University of Melbourne","ror":"https://ror.org/01ej9dk98","country_code":"AU","type":"education","lineage":["https://openalex.org/I165779595"]},{"id":"https://openalex.org/I172675005","display_name":"Nanyang Technological University","ror":"https://ror.org/02e7b5302","country_code":"SG","type":"education","lineage":["https://openalex.org/I172675005"]},{"id":"https://openalex.org/I82951845","display_name":"RMIT University","ror":"https://ror.org/04ttjf776","country_code":"AU","type":"education","lineage":["https://openalex.org/I82951845"]}],"countries":["AU","SG"],"is_corresponding":false,"raw_author_name":"Ranjan Sinha","raw_affiliation_strings":["1 Institut f\u00fcr Informatik, Christian-Albrecht-Universit\u00e4t Kiel, Herman-Rodewald-Strasse 3, 24118 Kiel, Germany, 2 School of Computer Science and Information Technology, RMIT University, Victoria 3000, 3 Department of Computer Science and Software Engineering, University of Melbourne, Victoria 3010, Australia and 4 School of Computer Engineering, Nanyang Technological University, Singapore 639798"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"1 Institut f\u00fcr Informatik, Christian-Albrecht-Universit\u00e4t Kiel, Herman-Rodewald-Strasse 3, 24118 Kiel, Germany, 2 School of Computer Science and Information Technology, RMIT University, Victoria 3000, 3 Department of Computer Science and Software Engineering, University of Melbourne, Victoria 3010, Australia and 4 School of Computer Engineering, Nanyang Technological University, Singapore 639798","institution_ids":["https://openalex.org/I165779595","https://openalex.org/I172675005","https://openalex.org/I82951845"]}]},{"author_position":"last","author":{"id":"https://openalex.org/A5020388832","display_name":"Bertil Schmidt","orcid":"https://orcid.org/0000-0003-2597-8331"},"institutions":[{"id":"https://openalex.org/I165779595","display_name":"The University of Melbourne","ror":"https://ror.org/01ej9dk98","country_code":"AU","type":"education","lineage":["https://openalex.org/I165779595"]},{"id":"https://openalex.org/I172675005","display_name":"Nanyang Technological University","ror":"https://ror.org/02e7b5302","country_code":"SG","type":"education","lineage":["https://openalex.org/I172675005"]},{"id":"https://openalex.org/I82951845","display_name":"RMIT University","ror":"https://ror.org/04ttjf776","country_code":"AU","type":"education","lineage":["https://openalex.org/I82951845"]}],"countries":["AU","SG"],"is_corresponding":false,"raw_author_name":"Bertil Schmidt","raw_affiliation_strings":["1 Institut f\u00fcr Informatik, Christian-Albrecht-Universit\u00e4t Kiel, Herman-Rodewald-Strasse 3, 24118 Kiel, Germany, 2 School of Computer Science and Information Technology, RMIT University, Victoria 3000, 3 Department of Computer Science and Software Engineering, University of Melbourne, Victoria 3010, Australia and 4 School of Computer Engineering, Nanyang Technological University, Singapore 639798"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"1 Institut f\u00fcr Informatik, Christian-Albrecht-Universit\u00e4t Kiel, Herman-Rodewald-Strasse 3, 24118 Kiel, Germany, 2 School of Computer Science and Information Technology, RMIT University, Victoria 3000, 3 Department of Computer Science and Software Engineering, University of Melbourne, Victoria 3010, Australia and 4 School of Computer Engineering, Nanyang Technological University, Singapore 639798","institution_ids":["https://openalex.org/I165779595","https://openalex.org/I172675005","https://openalex.org/I82951845"]}]}],"institutions":[],"countries_distinct_count":2,"institutions_distinct_count":3,"corresponding_author_ids":["https://openalex.org/A5108605263"],"corresponding_institution_ids":["https://openalex.org/I165779595","https://openalex.org/I172675005","https://openalex.org/I82951845"],"apc_list":{"value":3618,"currency":"USD","value_usd":3618},"apc_paid":null,"fwci":5.036,"has_fulltext":false,"cited_by_count":155,"citation_normalized_percentile":{"value":0.96349182,"is_in_top_1_percent":false,"is_in_top_10_percent":true},"cited_by_percentile_year":{"min":89,"max":100},"biblio":{"volume":"25","issue":"17","first_page":"2157","last_page":"2163"},"is_retracted":false,"is_paratext":false,"is_xpac":false,"primary_topic":{"id":"https://openalex.org/T10015","display_name":"Genomics and Phylogenetic Studies","score":0.25949999690055847,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},"topics":[{"id":"https://openalex.org/T10015","display_name":"Genomics and Phylogenetic Studies","score":0.25949999690055847,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},{"id":"https://openalex.org/T10054","display_name":"Parallel Computing and Optimization Techniques","score":0.15289999544620514,"subfield":{"id":"https://openalex.org/subfields/1708","display_name":"Hardware and Architecture"},"field":{"id":"https://openalex.org/fields/17","display_name":"Computer Science"},"domain":{"id":"https://openalex.org/domains/3","display_name":"Physical Sciences"}},{"id":"https://openalex.org/T10743","display_name":"Software Testing and Debugging Techniques","score":0.10360000282526016,"subfield":{"id":"https://openalex.org/subfields/1712","display_name":"Software"},"field":{"id":"https://openalex.org/fields/17","display_name":"Computer Science"},"domain":{"id":"https://openalex.org/domains/3","display_name":"Physical Sciences"}}],"keywords":[{"id":"https://openalex.org/keywords/computer-science","display_name":"Computer science","score":0.6825914978981018},{"id":"https://openalex.org/keywords/software","display_name":"Software","score":0.4368779957294464},{"id":"https://openalex.org/keywords/programming-language","display_name":"Programming language","score":0.19278904795646667}],"concepts":[{"id":"https://openalex.org/C41008148","wikidata":"https://www.wikidata.org/wiki/Q21198","display_name":"Computer science","level":0,"score":0.6825914978981018},{"id":"https://openalex.org/C2777904410","wikidata":"https://www.wikidata.org/wiki/Q7397","display_name":"Software","level":2,"score":0.4368779957294464},{"id":"https://openalex.org/C199360897","wikidata":"https://www.wikidata.org/wiki/Q9143","display_name":"Programming language","level":1,"score":0.19278904795646667}],"mesh":[{"descriptor_ui":"D000465","descriptor_name":"Algorithms","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D000465","descriptor_name":"Algorithms","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D000465","descriptor_name":"Algorithms","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D004247","descriptor_name":"DNA","qualifier_ui":"Q000235","qualifier_name":"genetics","is_major_topic":false},{"descriptor_ui":"D004247","descriptor_name":"DNA","qualifier_ui":"Q000235","qualifier_name":"genetics","is_major_topic":false},{"descriptor_ui":"D004247","descriptor_name":"DNA","qualifier_ui":"Q000235","qualifier_name":"genetics","is_major_topic":false},{"descriptor_ui":"D012107","descriptor_name":"Research Design","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D012107","descriptor_name":"Research Design","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D012107","descriptor_name":"Research Design","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D013997","descriptor_name":"Time Factors","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D013997","descriptor_name":"Time Factors","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D013997","descriptor_name":"Time Factors","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D016678","descriptor_name":"Genome","qualifier_ui":"Q000235","qualifier_name":"genetics","is_major_topic":false},{"descriptor_ui":"D016678","descriptor_name":"Genome","qualifier_ui":"Q000235","qualifier_name":"genetics","is_major_topic":false},{"descriptor_ui":"D016678","descriptor_name":"Genome","qualifier_ui":"Q000235","qualifier_name":"genetics","is_major_topic":false},{"descriptor_ui":"D017422","descriptor_name":"Sequence Analysis, DNA","qualifier_ui":"Q000379","qualifier_name":"methods","is_major_topic":false},{"descriptor_ui":"D017422","descriptor_name":"Sequence Analysis, DNA","qualifier_ui":"Q000379","qualifier_name":"methods","is_major_topic":false},{"descriptor_ui":"D017422","descriptor_name":"Sequence Analysis, DNA","qualifier_ui":"Q000379","qualifier_name":"methods","is_major_topic":false},{"descriptor_ui":"D019295","descriptor_name":"Computational Biology","qualifier_ui":"Q000379","qualifier_name":"methods","is_major_topic":false},{"descriptor_ui":"D019295","descriptor_name":"Computational Biology","qualifier_ui":"Q000379","qualifier_name":"methods","is_major_topic":false},{"descriptor_ui":"D019295","descriptor_name":"Computational Biology","qualifier_ui":"Q000379","qualifier_name":"methods","is_major_topic":false},{"descriptor_ui":"D030561","descriptor_name":"Databases, Nucleic Acid","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D030561","descriptor_name":"Databases, Nucleic Acid","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D030561","descriptor_name":"Databases, Nucleic Acid","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false}],"locations_count":6,"locations":[{"id":"doi:10.1093/bioinformatics/btp379","is_oa":true,"landing_page_url":"https://doi.org/10.1093/bioinformatics/btp379","pdf_url":"https://academic.oup.com/bioinformatics/article-pdf/25/17/2157/48995124/bioinformatics_25_17_2157.pdf","source":{"id":"https://openalex.org/S52395412","display_name":"Bioinformatics","issn_l":"1367-4803","issn":["1367-4803","1367-4811"],"is_oa":false,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310311648","host_organization_name":"Oxford University Press","host_organization_lineage":["https://openalex.org/P4310311648","https://openalex.org/P4310311647"],"host_organization_lineage_names":["Oxford University Press","University of Oxford"],"type":"journal"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Bioinformatics","raw_type":"journal-article"},{"id":"pmid:19542152","is_oa":false,"landing_page_url":"https://pubmed.ncbi.nlm.nih.gov/19542152","pdf_url":null,"source":{"id":"https://openalex.org/S4306525036","display_name":"PubMed","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I1299303238","host_organization_name":"National Institutes of Health","host_organization_lineage":["https://openalex.org/I1299303238"],"host_organization_lineage_names":[],"type":"repository"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Bioinformatics (Oxford, England)","raw_type":null},{"id":"pmh:oai:researchbank.rmit.edu.au:rmit:6009","is_oa":false,"landing_page_url":"http://researchbank.rmit.edu.au/view/rmit:6009","pdf_url":null,"source":{"id":"https://openalex.org/S4306402074","display_name":"RMIT Research Repository (RMIT University Library)","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I82951845","host_organization_name":"RMIT University","host_organization_lineage":["https://openalex.org/I82951845"],"host_organization_lineage_names":[],"type":"repository"},"license":null,"license_id":null,"version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":"","raw_type":"Journal Article"},{"id":"pmh:oai:CiteSeerX.psu:10.1.1.186.1862","is_oa":false,"landing_page_url":"http://citeseerx.ist.psu.edu/viewdoc/summary?doi=10.1.1.186.1862","pdf_url":null,"source":null,"license":null,"license_id":null,"version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":"http://www.seg.rmit.edu.au/research/download.php?manuscript=413","raw_type":"text"},{"id":"pmh:oai:alma.61RMIT_INST:11248357340001341","is_oa":false,"landing_page_url":"http://doi.org/10.1093/bioinformatics/btp379","pdf_url":null,"source":{"id":"https://openalex.org/S4306402074","display_name":"RMIT Research Repository (RMIT University Library)","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I82951845","host_organization_name":"RMIT University","host_organization_lineage":["https://openalex.org/I82951845"],"host_organization_lineage_names":[],"type":"repository"},"license":null,"license_id":null,"version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":"","raw_type":"text"},{"id":"pmh:oai:figshare.com:article/27433323","is_oa":true,"landing_page_url":"https://figshare.com/articles/journal_contribution/SHREC_a_short-read_error_correction_method/27433323","pdf_url":null,"source":{"id":"https://openalex.org/S4377196282","display_name":"Figshare","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I4210132348","host_organization_name":"Figshare (United Kingdom)","host_organization_lineage":["https://openalex.org/I4210132348"],"host_organization_lineage_names":[],"type":"repository"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":null,"raw_type":"Text"}],"best_oa_location":{"id":"doi:10.1093/bioinformatics/btp379","is_oa":true,"landing_page_url":"https://doi.org/10.1093/bioinformatics/btp379","pdf_url":"https://academic.oup.com/bioinformatics/article-pdf/25/17/2157/48995124/bioinformatics_25_17_2157.pdf","source":{"id":"https://openalex.org/S52395412","display_name":"Bioinformatics","issn_l":"1367-4803","issn":["1367-4803","1367-4811"],"is_oa":false,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310311648","host_organization_name":"Oxford University Press","host_organization_lineage":["https://openalex.org/P4310311648","https://openalex.org/P4310311647"],"host_organization_lineage_names":["Oxford University Press","University of Oxford"],"type":"journal"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Bioinformatics","raw_type":"journal-article"},"sustainable_development_goals":[],"awards":[],"funders":[],"has_content":{"grobid_xml":false,"pdf":true},"content_urls":{"pdf":"https://content.openalex.org/works/W2152246890.pdf"},"referenced_works_count":19,"referenced_works":["https://openalex.org/W938539187","https://openalex.org/W1990061958","https://openalex.org/W2023911006","https://openalex.org/W2048772283","https://openalex.org/W2072193858","https://openalex.org/W2097529842","https://openalex.org/W2127651281","https://openalex.org/W2131088968","https://openalex.org/W2135196291","https://openalex.org/W2136651963","https://openalex.org/W2138270253","https://openalex.org/W2142749416","https://openalex.org/W2144662851","https://openalex.org/W2151017710","https://openalex.org/W2155845142","https://openalex.org/W2160969485","https://openalex.org/W2164631357","https://openalex.org/W2171475724","https://openalex.org/W2616754551"],"related_works":["https://openalex.org/W2748952813","https://openalex.org/W2390279801","https://openalex.org/W2358668433","https://openalex.org/W2376932109","https://openalex.org/W2001405890","https://openalex.org/W2382290278","https://openalex.org/W2350741829","https://openalex.org/W2530322880","https://openalex.org/W1596801655","https://openalex.org/W2359140296"],"abstract_inverted_index":{"MOTIVATION:":[0],"Second-generation":[1],"sequencing":[2,16,29],"technologies":[3],"produce":[4],"a":[5,12,75,86,181],"massive":[6],"amount":[7],"of":[8,53,64,67,113,124,141,174,177],"short":[9,68,178],"reads":[10,108,179],"in":[11,81],"single":[13],"experiment.":[14],"However,":[15],"errors":[17,80],"can":[18,105],"cause":[19],"major":[20],"problems":[21],"when":[22],"using":[23],"this":[24],"approach":[25],"for":[26,41,50,61,78,118,131,144,150],"de":[27],"novo":[28],"applications.":[30],"Moreover,":[31],"existing":[32],"error":[33,62,122,138],"correction":[34,63,139],"methods":[35,58],"have":[36],"been":[37],"designed":[38],"and":[39,55,59,111,116,147],"optimized":[40],"shotgun":[42],"sequencing.":[43],"Therefore,":[44],"there":[45],"is":[46,163],"an":[47,137,166],"urgent":[48],"need":[49],"the":[51,91,95,103],"design":[52],"fast":[54],"accurate":[56],"computational":[57],"tools":[60],"large":[65],"amounts":[66],"read":[69,92],"data.":[70,133,152],"RESULTS:":[71],"We":[72],"present":[73],"SHREC,":[74],"new":[76],"algorithm":[77],"correcting":[79],"short-read":[82],"data":[83,93,97,120,146],"that":[84,102,171],"uses":[85],"generalized":[87],"suffix":[88],"trie":[89],"on":[90,180],"as":[94,128,130,165],"underlying":[96],"structure.":[98],"Our":[99],"results":[100,154],"show":[101],"method":[104],"identify":[106],"erroneous":[107],"with":[109,121],"sensitivity":[110],"specificity":[112],"over":[114,142,148],"99%":[115],"96%":[117],"simulated":[119,145],"rates":[123],"up":[125],"to":[126,158],"3%":[127],"well":[129],"real":[132,151],"Furthermore,":[134],"it":[135],"achieves":[136],"accuracy":[140],"80%":[143],"88%":[149],"These":[153],"are":[155],"clearly":[156],"superior":[157],"previously":[159],"published":[160],"approaches.":[161],"SHREC":[162],"available":[164],"efficient":[167],"open-source":[168],"Java":[169],"implementation":[170],"allows":[172],"processing":[173],"10":[175],"million":[176],"standard":[182],"workstation.":[183]},"counts_by_year":[{"year":2023,"cited_by_count":1},{"year":2022,"cited_by_count":5},{"year":2021,"cited_by_count":1},{"year":2020,"cited_by_count":3},{"year":2019,"cited_by_count":10},{"year":2018,"cited_by_count":9},{"year":2017,"cited_by_count":6},{"year":2016,"cited_by_count":16},{"year":2015,"cited_by_count":19},{"year":2014,"cited_by_count":20},{"year":2013,"cited_by_count":25},{"year":2012,"cited_by_count":12}],"updated_date":"2026-07-22T07:51:19.307946","created_date":"2025-10-10T00:00:00"}
