{"id":"https://openalex.org/W2118335502","doi":"https://doi.org/10.1093/bioinformatics/btp374","title":"A fast hybrid short read fragment assembly algorithm","display_name":"A fast hybrid short read fragment assembly algorithm","publication_year":2009,"publication_date":"2009-06-17","ids":{"openalex":"https://openalex.org/W2118335502","doi":"https://doi.org/10.1093/bioinformatics/btp374","mag":"2118335502","pmid":"https://pubmed.ncbi.nlm.nih.gov/19535537"},"language":"en","primary_location":{"id":"doi:10.1093/bioinformatics/btp374","is_oa":true,"landing_page_url":"https://doi.org/10.1093/bioinformatics/btp374","pdf_url":"https://academic.oup.com/bioinformatics/article-pdf/25/17/2279/553255/btp374.pdf","source":{"id":"https://openalex.org/S52395412","display_name":"Bioinformatics","issn_l":"1367-4803","issn":["1367-4803","1367-4811"],"is_oa":false,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310311648","host_organization_name":"Oxford University Press","host_organization_lineage":["https://openalex.org/P4310311648","https://openalex.org/P4310311647"],"host_organization_lineage_names":["Oxford University Press","University of Oxford"],"type":"journal"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Bioinformatics","raw_type":"journal-article"},"type":"article","indexed_in":["crossref","doaj","pubmed"],"open_access":{"is_oa":true,"oa_status":"bronze","oa_url":"https://academic.oup.com/bioinformatics/article-pdf/25/17/2279/553255/btp374.pdf","any_repository_has_fulltext":true},"authorships":[{"author_position":"first","author":{"id":"https://openalex.org/A5020388832","display_name":"Bertil Schmidt","orcid":"https://orcid.org/0000-0003-2597-8331"},"institutions":[{"id":"https://openalex.org/I165779595","display_name":"The University of Melbourne","ror":"https://ror.org/01ej9dk98","country_code":"AU","type":"education","lineage":["https://openalex.org/I165779595"]},{"id":"https://openalex.org/I172675005","display_name":"Nanyang Technological University","ror":"https://ror.org/02e7b5302","country_code":"SG","type":"education","lineage":["https://openalex.org/I172675005"]},{"id":"https://openalex.org/I42894916","display_name":"Data61","ror":"https://ror.org/03q397159","country_code":"AU","type":"other","lineage":["https://openalex.org/I1292875679","https://openalex.org/I2801453606","https://openalex.org/I42894916","https://openalex.org/I4387156119"]},{"id":"https://openalex.org/I82951845","display_name":"RMIT University","ror":"https://ror.org/04ttjf776","country_code":"AU","type":"education","lineage":["https://openalex.org/I82951845"]}],"countries":["AU","SG"],"is_corresponding":true,"raw_author_name":"Bertil Schmidt","raw_affiliation_strings":["1 School of Computer Engineering, Nanyang Technological University, Singapore 639798, 2 Department of Computer Science and Software Engineering, University of Melbourne, 3 National ICT Australia, Victoria Research Lab, Victoria 3010 and 4 School of Computer Science and IT, RMIT University, Melbourne 3001, Australia"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"1 School of Computer Engineering, Nanyang Technological University, Singapore 639798, 2 Department of Computer Science and Software Engineering, University of Melbourne, 3 National ICT Australia, Victoria Research Lab, Victoria 3010 and 4 School of Computer Science and IT, RMIT University, Melbourne 3001, Australia","institution_ids":["https://openalex.org/I165779595","https://openalex.org/I172675005","https://openalex.org/I42894916","https://openalex.org/I82951845"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5101502254","display_name":"Ranjan Sinha","orcid":"https://orcid.org/0000-0003-2485-8549"},"institutions":[{"id":"https://openalex.org/I165779595","display_name":"The University of Melbourne","ror":"https://ror.org/01ej9dk98","country_code":"AU","type":"education","lineage":["https://openalex.org/I165779595"]},{"id":"https://openalex.org/I172675005","display_name":"Nanyang Technological University","ror":"https://ror.org/02e7b5302","country_code":"SG","type":"education","lineage":["https://openalex.org/I172675005"]},{"id":"https://openalex.org/I42894916","display_name":"Data61","ror":"https://ror.org/03q397159","country_code":"AU","type":"other","lineage":["https://openalex.org/I1292875679","https://openalex.org/I2801453606","https://openalex.org/I42894916","https://openalex.org/I4387156119"]},{"id":"https://openalex.org/I82951845","display_name":"RMIT University","ror":"https://ror.org/04ttjf776","country_code":"AU","type":"education","lineage":["https://openalex.org/I82951845"]}],"countries":["AU","SG"],"is_corresponding":false,"raw_author_name":"Ranjan Sinha","raw_affiliation_strings":["1 School of Computer Engineering, Nanyang Technological University, Singapore 639798, 2 Department of Computer Science and Software Engineering, University of Melbourne, 3 National ICT Australia, Victoria Research Lab, Victoria 3010 and 4 School of Computer Science and IT, RMIT University, Melbourne 3001, Australia"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"1 School of Computer Engineering, Nanyang Technological University, Singapore 639798, 2 Department of Computer Science and Software Engineering, University of Melbourne, 3 National ICT Australia, Victoria Research Lab, Victoria 3010 and 4 School of Computer Science and IT, RMIT University, Melbourne 3001, Australia","institution_ids":["https://openalex.org/I165779595","https://openalex.org/I172675005","https://openalex.org/I42894916","https://openalex.org/I82951845"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5020223445","display_name":"Bryan Beresford\u2010Smith","orcid":null},"institutions":[{"id":"https://openalex.org/I165779595","display_name":"The University of Melbourne","ror":"https://ror.org/01ej9dk98","country_code":"AU","type":"education","lineage":["https://openalex.org/I165779595"]},{"id":"https://openalex.org/I172675005","display_name":"Nanyang Technological University","ror":"https://ror.org/02e7b5302","country_code":"SG","type":"education","lineage":["https://openalex.org/I172675005"]},{"id":"https://openalex.org/I42894916","display_name":"Data61","ror":"https://ror.org/03q397159","country_code":"AU","type":"other","lineage":["https://openalex.org/I1292875679","https://openalex.org/I2801453606","https://openalex.org/I42894916","https://openalex.org/I4387156119"]},{"id":"https://openalex.org/I82951845","display_name":"RMIT University","ror":"https://ror.org/04ttjf776","country_code":"AU","type":"education","lineage":["https://openalex.org/I82951845"]}],"countries":["AU","SG"],"is_corresponding":false,"raw_author_name":"Bryan Beresford-Smith","raw_affiliation_strings":["1 School of Computer Engineering, Nanyang Technological University, Singapore 639798, 2 Department of Computer Science and Software Engineering, University of Melbourne, 3 National ICT Australia, Victoria Research Lab, Victoria 3010 and 4 School of Computer Science and IT, RMIT University, Melbourne 3001, Australia"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"1 School of Computer Engineering, Nanyang Technological University, Singapore 639798, 2 Department of Computer Science and Software Engineering, University of Melbourne, 3 National ICT Australia, Victoria Research Lab, Victoria 3010 and 4 School of Computer Science and IT, RMIT University, Melbourne 3001, Australia","institution_ids":["https://openalex.org/I165779595","https://openalex.org/I172675005","https://openalex.org/I42894916","https://openalex.org/I82951845"]}]},{"author_position":"last","author":{"id":"https://openalex.org/A5021097696","display_name":"Simon J. Puglisi","orcid":"https://orcid.org/0000-0001-7668-7636"},"institutions":[{"id":"https://openalex.org/I165779595","display_name":"The University of Melbourne","ror":"https://ror.org/01ej9dk98","country_code":"AU","type":"education","lineage":["https://openalex.org/I165779595"]},{"id":"https://openalex.org/I172675005","display_name":"Nanyang Technological University","ror":"https://ror.org/02e7b5302","country_code":"SG","type":"education","lineage":["https://openalex.org/I172675005"]},{"id":"https://openalex.org/I42894916","display_name":"Data61","ror":"https://ror.org/03q397159","country_code":"AU","type":"other","lineage":["https://openalex.org/I1292875679","https://openalex.org/I2801453606","https://openalex.org/I42894916","https://openalex.org/I4387156119"]},{"id":"https://openalex.org/I82951845","display_name":"RMIT University","ror":"https://ror.org/04ttjf776","country_code":"AU","type":"education","lineage":["https://openalex.org/I82951845"]}],"countries":["AU","SG"],"is_corresponding":false,"raw_author_name":"Simon J. Puglisi","raw_affiliation_strings":["1 School of Computer Engineering, Nanyang Technological University, Singapore 639798, 2 Department of Computer Science and Software Engineering, University of Melbourne, 3 National ICT Australia, Victoria Research Lab, Victoria 3010 and 4 School of Computer Science and IT, RMIT University, Melbourne 3001, Australia"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"1 School of Computer Engineering, Nanyang Technological University, Singapore 639798, 2 Department of Computer Science and Software Engineering, University of Melbourne, 3 National ICT Australia, Victoria Research Lab, Victoria 3010 and 4 School of Computer Science and IT, RMIT University, Melbourne 3001, Australia","institution_ids":["https://openalex.org/I165779595","https://openalex.org/I172675005","https://openalex.org/I42894916","https://openalex.org/I82951845"]}]}],"institutions":[],"countries_distinct_count":2,"institutions_distinct_count":4,"corresponding_author_ids":["https://openalex.org/A5020388832"],"corresponding_institution_ids":["https://openalex.org/I165779595","https://openalex.org/I172675005","https://openalex.org/I42894916","https://openalex.org/I82951845"],"apc_list":{"value":3618,"currency":"USD","value_usd":3618},"apc_paid":null,"fwci":2.3924,"has_fulltext":false,"cited_by_count":56,"citation_normalized_percentile":{"value":0.88955727,"is_in_top_1_percent":false,"is_in_top_10_percent":false},"cited_by_percentile_year":{"min":89,"max":99},"biblio":{"volume":"25","issue":"17","first_page":"2279","last_page":"2280"},"is_retracted":false,"is_paratext":false,"is_xpac":false,"primary_topic":{"id":"https://openalex.org/T10015","display_name":"Genomics and Phylogenetic Studies","score":0.9947999715805054,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},"topics":[{"id":"https://openalex.org/T10015","display_name":"Genomics and Phylogenetic Studies","score":0.9947999715805054,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},{"id":"https://openalex.org/T10260","display_name":"Software Engineering Research","score":0.957099974155426,"subfield":{"id":"https://openalex.org/subfields/1710","display_name":"Information Systems"},"field":{"id":"https://openalex.org/fields/17","display_name":"Computer Science"},"domain":{"id":"https://openalex.org/domains/3","display_name":"Physical Sciences"}},{"id":"https://openalex.org/T11986","display_name":"Scientific Computing and Data Management","score":0.9483000040054321,"subfield":{"id":"https://openalex.org/subfields/1802","display_name":"Information Systems and Management"},"field":{"id":"https://openalex.org/fields/18","display_name":"Decision Sciences"},"domain":{"id":"https://openalex.org/domains/2","display_name":"Social Sciences"}}],"keywords":[{"id":"https://openalex.org/keywords/computer-science","display_name":"Computer science","score":0.7655702233314514},{"id":"https://openalex.org/keywords/graph","display_name":"Graph","score":0.6633139848709106},{"id":"https://openalex.org/keywords/greedy-algorithm","display_name":"Greedy algorithm","score":0.5328648090362549},{"id":"https://openalex.org/keywords/assembly-language","display_name":"Assembly language","score":0.45318883657455444},{"id":"https://openalex.org/keywords/source-code","display_name":"Source code","score":0.4517206847667694},{"id":"https://openalex.org/keywords/algorithm","display_name":"Algorithm","score":0.44477012753486633},{"id":"https://openalex.org/keywords/contig","display_name":"Contig","score":0.42995989322662354},{"id":"https://openalex.org/keywords/theoretical-computer-science","display_name":"Theoretical computer science","score":0.39072102308273315},{"id":"https://openalex.org/keywords/software","display_name":"Software","score":0.38717928528785706},{"id":"https://openalex.org/keywords/programming-language","display_name":"Programming language","score":0.2854061722755432}],"concepts":[{"id":"https://openalex.org/C41008148","wikidata":"https://www.wikidata.org/wiki/Q21198","display_name":"Computer science","level":0,"score":0.7655702233314514},{"id":"https://openalex.org/C132525143","wikidata":"https://www.wikidata.org/wiki/Q141488","display_name":"Graph","level":2,"score":0.6633139848709106},{"id":"https://openalex.org/C51823790","wikidata":"https://www.wikidata.org/wiki/Q504353","display_name":"Greedy algorithm","level":2,"score":0.5328648090362549},{"id":"https://openalex.org/C50831359","wikidata":"https://www.wikidata.org/wiki/Q165436","display_name":"Assembly language","level":3,"score":0.45318883657455444},{"id":"https://openalex.org/C43126263","wikidata":"https://www.wikidata.org/wiki/Q128751","display_name":"Source code","level":2,"score":0.4517206847667694},{"id":"https://openalex.org/C11413529","wikidata":"https://www.wikidata.org/wiki/Q8366","display_name":"Algorithm","level":1,"score":0.44477012753486633},{"id":"https://openalex.org/C59582021","wikidata":"https://www.wikidata.org/wiki/Q1128751","display_name":"Contig","level":4,"score":0.42995989322662354},{"id":"https://openalex.org/C80444323","wikidata":"https://www.wikidata.org/wiki/Q2878974","display_name":"Theoretical computer science","level":1,"score":0.39072102308273315},{"id":"https://openalex.org/C2777904410","wikidata":"https://www.wikidata.org/wiki/Q7397","display_name":"Software","level":2,"score":0.38717928528785706},{"id":"https://openalex.org/C199360897","wikidata":"https://www.wikidata.org/wiki/Q9143","display_name":"Programming language","level":1,"score":0.2854061722755432},{"id":"https://openalex.org/C55493867","wikidata":"https://www.wikidata.org/wiki/Q7094","display_name":"Biochemistry","level":1,"score":0.0},{"id":"https://openalex.org/C185592680","wikidata":"https://www.wikidata.org/wiki/Q2329","display_name":"Chemistry","level":0,"score":0.0},{"id":"https://openalex.org/C104317684","wikidata":"https://www.wikidata.org/wiki/Q7187","display_name":"Gene","level":2,"score":0.0},{"id":"https://openalex.org/C141231307","wikidata":"https://www.wikidata.org/wiki/Q7020","display_name":"Genome","level":3,"score":0.0}],"mesh":[{"descriptor_ui":"D000465","descriptor_name":"Algorithms","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D000465","descriptor_name":"Algorithms","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D000465","descriptor_name":"Algorithms","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D013211","descriptor_name":"Staphylococcus aureus","qualifier_ui":"Q000235","qualifier_name":"genetics","is_major_topic":false},{"descriptor_ui":"D013211","descriptor_name":"Staphylococcus aureus","qualifier_ui":"Q000235","qualifier_name":"genetics","is_major_topic":false},{"descriptor_ui":"D013211","descriptor_name":"Staphylococcus aureus","qualifier_ui":"Q000235","qualifier_name":"genetics","is_major_topic":false},{"descriptor_ui":"D016480","descriptor_name":"Helicobacter pylori","qualifier_ui":"Q000235","qualifier_name":"genetics","is_major_topic":false},{"descriptor_ui":"D016480","descriptor_name":"Helicobacter pylori","qualifier_ui":"Q000235","qualifier_name":"genetics","is_major_topic":false},{"descriptor_ui":"D016480","descriptor_name":"Helicobacter pylori","qualifier_ui":"Q000235","qualifier_name":"genetics","is_major_topic":false},{"descriptor_ui":"D017422","descriptor_name":"Sequence Analysis, DNA","qualifier_ui":"Q000379","qualifier_name":"methods","is_major_topic":false},{"descriptor_ui":"D017422","descriptor_name":"Sequence Analysis, DNA","qualifier_ui":"Q000379","qualifier_name":"methods","is_major_topic":false},{"descriptor_ui":"D017422","descriptor_name":"Sequence Analysis, DNA","qualifier_ui":"Q000379","qualifier_name":"methods","is_major_topic":false},{"descriptor_ui":"D019295","descriptor_name":"Computational Biology","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D019295","descriptor_name":"Computational Biology","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D019295","descriptor_name":"Computational Biology","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D030561","descriptor_name":"Databases, Nucleic Acid","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D030561","descriptor_name":"Databases, Nucleic Acid","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D030561","descriptor_name":"Databases, Nucleic Acid","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false}],"locations_count":6,"locations":[{"id":"doi:10.1093/bioinformatics/btp374","is_oa":true,"landing_page_url":"https://doi.org/10.1093/bioinformatics/btp374","pdf_url":"https://academic.oup.com/bioinformatics/article-pdf/25/17/2279/553255/btp374.pdf","source":{"id":"https://openalex.org/S52395412","display_name":"Bioinformatics","issn_l":"1367-4803","issn":["1367-4803","1367-4811"],"is_oa":false,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310311648","host_organization_name":"Oxford University Press","host_organization_lineage":["https://openalex.org/P4310311648","https://openalex.org/P4310311647"],"host_organization_lineage_names":["Oxford University Press","University of Oxford"],"type":"journal"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Bioinformatics","raw_type":"journal-article"},{"id":"pmid:19535537","is_oa":false,"landing_page_url":"https://pubmed.ncbi.nlm.nih.gov/19535537","pdf_url":null,"source":{"id":"https://openalex.org/S4306525036","display_name":"PubMed","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I1299303238","host_organization_name":"National Institutes of Health","host_organization_lineage":["https://openalex.org/I1299303238"],"host_organization_lineage_names":[],"type":"repository"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Bioinformatics (Oxford, England)","raw_type":null},{"id":"pmh:oai:researchbank.rmit.edu.au:rmit:5920","is_oa":false,"landing_page_url":"http://researchbank.rmit.edu.au/view/rmit:5920","pdf_url":null,"source":{"id":"https://openalex.org/S4306402074","display_name":"RMIT Research Repository (RMIT University Library)","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I82951845","host_organization_name":"RMIT University","host_organization_lineage":["https://openalex.org/I82951845"],"host_organization_lineage_names":[],"type":"repository"},"license":null,"license_id":null,"version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":"","raw_type":"Journal Article"},{"id":"pmh:oai:alma.61RMIT_INST:11248349690001341","is_oa":false,"landing_page_url":"http://doi.org/10.1093/bioinformatics/btp374","pdf_url":null,"source":{"id":"https://openalex.org/S4306402074","display_name":"RMIT Research Repository (RMIT University Library)","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I82951845","host_organization_name":"RMIT University","host_organization_lineage":["https://openalex.org/I82951845"],"host_organization_lineage_names":[],"type":"repository"},"license":null,"license_id":null,"version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":"","raw_type":"text"},{"id":"pmh:oai:figshare.com:article/27434649","is_oa":true,"landing_page_url":"https://figshare.com/articles/journal_contribution/A_fast_hybrid_short_read_fragment_assembly_algorithm/27434649","pdf_url":null,"source":{"id":"https://openalex.org/S4377196282","display_name":"Figshare","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I4210132348","host_organization_name":"Figshare (United Kingdom)","host_organization_lineage":["https://openalex.org/I4210132348"],"host_organization_lineage_names":[],"type":"repository"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":null,"raw_type":"Text"},{"id":"pmh:oai:jupiter.its.unimelb.edu.au:11343/31774","is_oa":false,"landing_page_url":"http://hdl.handle.net/11343/31774","pdf_url":null,"source":{"id":"https://openalex.org/S4377196259","display_name":"Minerva Access (University of Melbourne)","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I165779595","host_organization_name":"The University of Melbourne","host_organization_lineage":["https://openalex.org/I165779595"],"host_organization_lineage_names":[],"type":"repository"},"license":null,"license_id":null,"version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":"","raw_type":"Journal Article"}],"best_oa_location":{"id":"doi:10.1093/bioinformatics/btp374","is_oa":true,"landing_page_url":"https://doi.org/10.1093/bioinformatics/btp374","pdf_url":"https://academic.oup.com/bioinformatics/article-pdf/25/17/2279/553255/btp374.pdf","source":{"id":"https://openalex.org/S52395412","display_name":"Bioinformatics","issn_l":"1367-4803","issn":["1367-4803","1367-4811"],"is_oa":false,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310311648","host_organization_name":"Oxford University Press","host_organization_lineage":["https://openalex.org/P4310311648","https://openalex.org/P4310311647"],"host_organization_lineage_names":["Oxford University Press","University of Oxford"],"type":"journal"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Bioinformatics","raw_type":"journal-article"},"sustainable_development_goals":[{"id":"https://metadata.un.org/sdg/9","score":0.5600000023841858,"display_name":"Industry, innovation and infrastructure"}],"awards":[],"funders":[],"has_content":{"grobid_xml":false,"pdf":false},"content_urls":null,"referenced_works_count":9,"referenced_works":["https://openalex.org/W1767772592","https://openalex.org/W2023911006","https://openalex.org/W2127651281","https://openalex.org/W2151017710","https://openalex.org/W2159998739","https://openalex.org/W2160969485","https://openalex.org/W2164631357","https://openalex.org/W2171475724","https://openalex.org/W2616754551"],"related_works":["https://openalex.org/W4387497383","https://openalex.org/W3183948672","https://openalex.org/W3173606202","https://openalex.org/W3110381201","https://openalex.org/W2948807893","https://openalex.org/W2935909890","https://openalex.org/W2778153218","https://openalex.org/W2758277628","https://openalex.org/W1531601525","https://openalex.org/W2015535546"],"abstract_inverted_index":{"SUMMARY:":[0],"The":[1],"shorter":[2],"and":[3,38,58,137],"vastly":[4],"more":[5],"numerous":[6],"reads":[7,22],"produced":[8],"by":[9],"second-generation":[10],"sequencing":[11],"technologies":[12],"require":[13],"new":[14],"tools":[15,29,140],"that":[16,116],"can":[17,30,76,119],"assemble":[18],"massive":[19],"numbers":[20],"of":[21,49,82,99,145],"in":[23,47,133],"reasonable":[24],"time.":[25],"Existing":[26],"short-read":[27],"assembly":[28,50,73,111,122,139],"be":[31,77],"classified":[32],"into":[33],"two":[34,84],"categories:":[35],"greedy":[36,88],"extension-based":[37],"graph-based.":[39],"While":[40],"the":[41,52,100,129,134],"graph-based":[42,130],"approaches":[43,131],"are":[44,63],"generally":[45],"superior":[46],"terms":[48],"quality,":[51],"computer":[53],"resources":[54],"required":[55],"for":[56,90],"building":[57],"storing":[59],"a":[60,80,142],"huge":[61],"graph":[62,103],"very":[64],"high.":[65],"In":[66],"this":[67,117],"article,":[68],"we":[69],"present":[70],"Taipan,":[71],"an":[72,121],"algorithm":[74],"which":[75],"viewed":[78],"as":[79,108,126,128],"hybrid":[81],"these":[83],"approaches.":[85],"Taipan":[86],"uses":[87],"extensions":[89],"contig":[91],"construction":[92],"but":[93],"at":[94,124],"each":[95],"step":[96],"realizes":[97],"enough":[98],"corresponding":[101],"read":[102],"to":[104,109],"make":[105],"better":[106],"decisions":[107],"how":[110],"should":[112],"continue.":[113],"We":[114],"show":[115],"approach":[118],"achieve":[120],"quality":[123],"least":[125],"good":[127],"used":[132],"popular":[135],"Edena":[136],"Velvet":[138],"using":[141],"moderate":[143],"amount":[144],"computing":[146],"resources.":[147]},"counts_by_year":[{"year":2025,"cited_by_count":2},{"year":2022,"cited_by_count":4},{"year":2021,"cited_by_count":1},{"year":2020,"cited_by_count":1},{"year":2019,"cited_by_count":1},{"year":2018,"cited_by_count":1},{"year":2017,"cited_by_count":3},{"year":2016,"cited_by_count":5},{"year":2015,"cited_by_count":3},{"year":2014,"cited_by_count":7},{"year":2013,"cited_by_count":9},{"year":2012,"cited_by_count":5}],"updated_date":"2026-07-23T08:03:31.855105","created_date":"2025-10-10T00:00:00"}
