{"id":"https://openalex.org/W2096896397","doi":"https://doi.org/10.1093/bioinformatics/btp360","title":"An investigation into the population abundance distribution of mRNAs, proteins, and metabolites in biological systems","display_name":"An investigation into the population abundance distribution of mRNAs, proteins, and metabolites in biological systems","publication_year":2009,"publication_date":"2009-06-17","ids":{"openalex":"https://openalex.org/W2096896397","doi":"https://doi.org/10.1093/bioinformatics/btp360","mag":"2096896397","pmid":"https://pubmed.ncbi.nlm.nih.gov/19535531"},"language":"en","primary_location":{"id":"doi:10.1093/bioinformatics/btp360","is_oa":true,"landing_page_url":"https://doi.org/10.1093/bioinformatics/btp360","pdf_url":"https://academic.oup.com/bioinformatics/article-pdf/25/16/2020/48994458/bioinformatics_25_16_2020.pdf","source":{"id":"https://openalex.org/S52395412","display_name":"Bioinformatics","issn_l":"1367-4803","issn":["1367-4803","1367-4811"],"is_oa":false,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310311648","host_organization_name":"Oxford University Press","host_organization_lineage":["https://openalex.org/P4310311648","https://openalex.org/P4310311647"],"host_organization_lineage_names":["Oxford University Press","University of Oxford"],"type":"journal"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Bioinformatics","raw_type":"journal-article"},"type":"article","indexed_in":["crossref","doaj","pubmed"],"open_access":{"is_oa":true,"oa_status":"bronze","oa_url":"https://academic.oup.com/bioinformatics/article-pdf/25/16/2020/48994458/bioinformatics_25_16_2020.pdf","any_repository_has_fulltext":false},"authorships":[{"author_position":"first","author":{"id":"https://openalex.org/A5071822954","display_name":"Chuan L\u00fc","orcid":"https://orcid.org/0000-0002-4898-6679"},"institutions":[{"id":"https://openalex.org/I16038530","display_name":"Aberystwyth University","ror":"https://ror.org/015m2p889","country_code":"GB","type":"education","lineage":["https://openalex.org/I16038530"]}],"countries":["GB"],"is_corresponding":true,"raw_author_name":"Chuan Lu","raw_affiliation_strings":["Department of Computer Science, Aberystwyth University, Ceredigion SY23 3DB, UK","Department of Computer Science, Aberystwyth University, Ceredigion, SY23 3DB, UK"],"affiliations":[{"raw_affiliation_string":"Department of Computer Science, Aberystwyth University, Ceredigion SY23 3DB, UK","institution_ids":["https://openalex.org/I16038530"]},{"raw_affiliation_string":"Department of Computer Science, Aberystwyth University, Ceredigion, SY23 3DB, UK","institution_ids":["https://openalex.org/I16038530"]}]},{"author_position":"last","author":{"id":"https://openalex.org/A5020822487","display_name":"Ross D. King","orcid":"https://orcid.org/0000-0001-7208-4387"},"institutions":[{"id":"https://openalex.org/I16038530","display_name":"Aberystwyth University","ror":"https://ror.org/015m2p889","country_code":"GB","type":"education","lineage":["https://openalex.org/I16038530"]}],"countries":["GB"],"is_corresponding":false,"raw_author_name":"Ross D. King","raw_affiliation_strings":["Department of Computer Science, Aberystwyth University, Ceredigion SY23 3DB, UK","Department of Computer Science, Aberystwyth University, Ceredigion, SY23 3DB, UK"],"affiliations":[{"raw_affiliation_string":"Department of Computer Science, Aberystwyth University, Ceredigion SY23 3DB, UK","institution_ids":["https://openalex.org/I16038530"]},{"raw_affiliation_string":"Department of Computer Science, Aberystwyth University, Ceredigion, SY23 3DB, UK","institution_ids":["https://openalex.org/I16038530"]}]}],"institutions":[],"countries_distinct_count":1,"institutions_distinct_count":2,"corresponding_author_ids":["https://openalex.org/A5071822954"],"corresponding_institution_ids":["https://openalex.org/I16038530"],"apc_list":{"value":3618,"currency":"USD","value_usd":3618},"apc_paid":null,"fwci":1.348,"has_fulltext":true,"cited_by_count":53,"citation_normalized_percentile":{"value":0.80063456,"is_in_top_1_percent":false,"is_in_top_10_percent":false},"cited_by_percentile_year":{"min":89,"max":99},"biblio":{"volume":"25","issue":"16","first_page":"2020","last_page":"2027"},"is_retracted":false,"is_paratext":false,"is_xpac":false,"primary_topic":{"id":"https://openalex.org/T10932","display_name":"Microbial Metabolic Engineering and Bioproduction","score":0.9959999918937683,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},"topics":[{"id":"https://openalex.org/T10932","display_name":"Microbial Metabolic Engineering and Bioproduction","score":0.9959999918937683,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},{"id":"https://openalex.org/T10887","display_name":"Bioinformatics and Genomic Networks","score":0.9944999814033508,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},{"id":"https://openalex.org/T11764","display_name":"Evolution and Genetic Dynamics","score":0.9918000102043152,"subfield":{"id":"https://openalex.org/subfields/1311","display_name":"Genetics"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}}],"keywords":[{"id":"https://openalex.org/keywords/abundance","display_name":"Abundance (ecology)","score":0.6766513586044312},{"id":"https://openalex.org/keywords/computational-biology","display_name":"Computational biology","score":0.5435218214988708},{"id":"https://openalex.org/keywords/population","display_name":"Population","score":0.495508074760437},{"id":"https://openalex.org/keywords/distribution","display_name":"Distribution (mathematics)","score":0.48096099495887756},{"id":"https://openalex.org/keywords/biology","display_name":"Biology","score":0.47871923446655273},{"id":"https://openalex.org/keywords/ecology","display_name":"Ecology","score":0.18973007798194885},{"id":"https://openalex.org/keywords/mathematics","display_name":"Mathematics","score":0.08025604486465454},{"id":"https://openalex.org/keywords/medicine","display_name":"Medicine","score":0.07056117057800293}],"concepts":[{"id":"https://openalex.org/C77077793","wikidata":"https://www.wikidata.org/wiki/Q336019","display_name":"Abundance (ecology)","level":2,"score":0.6766513586044312},{"id":"https://openalex.org/C70721500","wikidata":"https://www.wikidata.org/wiki/Q177005","display_name":"Computational biology","level":1,"score":0.5435218214988708},{"id":"https://openalex.org/C2908647359","wikidata":"https://www.wikidata.org/wiki/Q2625603","display_name":"Population","level":2,"score":0.495508074760437},{"id":"https://openalex.org/C110121322","wikidata":"https://www.wikidata.org/wiki/Q865811","display_name":"Distribution (mathematics)","level":2,"score":0.48096099495887756},{"id":"https://openalex.org/C86803240","wikidata":"https://www.wikidata.org/wiki/Q420","display_name":"Biology","level":0,"score":0.47871923446655273},{"id":"https://openalex.org/C18903297","wikidata":"https://www.wikidata.org/wiki/Q7150","display_name":"Ecology","level":1,"score":0.18973007798194885},{"id":"https://openalex.org/C33923547","wikidata":"https://www.wikidata.org/wiki/Q395","display_name":"Mathematics","level":0,"score":0.08025604486465454},{"id":"https://openalex.org/C71924100","wikidata":"https://www.wikidata.org/wiki/Q11190","display_name":"Medicine","level":0,"score":0.07056117057800293},{"id":"https://openalex.org/C134306372","wikidata":"https://www.wikidata.org/wiki/Q7754","display_name":"Mathematical analysis","level":1,"score":0.0},{"id":"https://openalex.org/C99454951","wikidata":"https://www.wikidata.org/wiki/Q932068","display_name":"Environmental health","level":1,"score":0.0}],"mesh":[{"descriptor_ui":"D003198","descriptor_name":"Computer Simulation","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D003198","descriptor_name":"Computer Simulation","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D003198","descriptor_name":"Computer Simulation","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D003198","descriptor_name":"Computer Simulation","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D008954","descriptor_name":"Models, Biological","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D008954","descriptor_name":"Models, Biological","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D008954","descriptor_name":"Models, Biological","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D008954","descriptor_name":"Models, Biological","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D011506","descriptor_name":"Proteins","qualifier_ui":"Q000378","qualifier_name":"metabolism","is_major_topic":false},{"descriptor_ui":"D011506","descriptor_name":"Proteins","qualifier_ui":"Q000378","qualifier_name":"metabolism","is_major_topic":false},{"descriptor_ui":"D011506","descriptor_name":"Proteins","qualifier_ui":"Q000378","qualifier_name":"metabolism","is_major_topic":false},{"descriptor_ui":"D011506","descriptor_name":"Proteins","qualifier_ui":"Q000378","qualifier_name":"metabolism","is_major_topic":false},{"descriptor_ui":"D011506","descriptor_name":"Proteins","qualifier_ui":"Q000737","qualifier_name":"chemistry","is_major_topic":false},{"descriptor_ui":"D011506","descriptor_name":"Proteins","qualifier_ui":"Q000737","qualifier_name":"chemistry","is_major_topic":false},{"descriptor_ui":"D011506","descriptor_name":"Proteins","qualifier_ui":"Q000737","qualifier_name":"chemistry","is_major_topic":false},{"descriptor_ui":"D011506","descriptor_name":"Proteins","qualifier_ui":"Q000737","qualifier_name":"chemistry","is_major_topic":false},{"descriptor_ui":"D012333","descriptor_name":"RNA, Messenger","qualifier_ui":"Q000378","qualifier_name":"metabolism","is_major_topic":false},{"descriptor_ui":"D012333","descriptor_name":"RNA, Messenger","qualifier_ui":"Q000378","qualifier_name":"metabolism","is_major_topic":false},{"descriptor_ui":"D012333","descriptor_name":"RNA, Messenger","qualifier_ui":"Q000378","qualifier_name":"metabolism","is_major_topic":false},{"descriptor_ui":"D012333","descriptor_name":"RNA, Messenger","qualifier_ui":"Q000378","qualifier_name":"metabolism","is_major_topic":false},{"descriptor_ui":"D055442","descriptor_name":"Metabolome","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D055442","descriptor_name":"Metabolome","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D055442","descriptor_name":"Metabolome","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D055442","descriptor_name":"Metabolome","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true}],"locations_count":5,"locations":[{"id":"doi:10.1093/bioinformatics/btp360","is_oa":true,"landing_page_url":"https://doi.org/10.1093/bioinformatics/btp360","pdf_url":"https://academic.oup.com/bioinformatics/article-pdf/25/16/2020/48994458/bioinformatics_25_16_2020.pdf","source":{"id":"https://openalex.org/S52395412","display_name":"Bioinformatics","issn_l":"1367-4803","issn":["1367-4803","1367-4811"],"is_oa":false,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310311648","host_organization_name":"Oxford University Press","host_organization_lineage":["https://openalex.org/P4310311648","https://openalex.org/P4310311647"],"host_organization_lineage_names":["Oxford University Press","University of Oxford"],"type":"journal"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Bioinformatics","raw_type":"journal-article"},{"id":"pmid:19535531","is_oa":false,"landing_page_url":"https://pubmed.ncbi.nlm.nih.gov/19535531","pdf_url":null,"source":{"id":"https://openalex.org/S4306525036","display_name":"PubMed","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I1299303238","host_organization_name":"National Institutes of Health","host_organization_lineage":["https://openalex.org/I1299303238"],"host_organization_lineage_names":[],"type":"repository"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Bioinformatics (Oxford, England)","raw_type":null},{"id":"pmh:oai:pure.atira.dk:openaire_cris_publications/a1aea352-8f04-4e62-a319-475e87650fe6","is_oa":false,"landing_page_url":"https://research.manchester.ac.uk/en/publications/a1aea352-8f04-4e62-a319-475e87650fe6","pdf_url":null,"source":{"id":"https://openalex.org/S4306400662","display_name":"Research Explorer (The University of Manchester)","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I28407311","host_organization_name":"University of Manchester","host_organization_lineage":["https://openalex.org/I28407311"],"host_organization_lineage_names":[],"type":"repository"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Lu, C & King, R D 2009, 'An investigation into the population abundance distribution of mRNAs, proteins, and metabolites in biological systems', Bioinformatics, vol. 25, no. 16, pp. 2020-2027. https://doi.org/10.1093/bioinformatics/btp360","raw_type":"info:eu-repo/semantics/publishedVersion"},{"id":"pmh:oai:aber.ac.uk:publications/c663ab8b-b596-493b-94de-4d422d34a7c4","is_oa":false,"landing_page_url":"http://hdl.handle.net/2160/3982","pdf_url":null,"source":{"id":"https://openalex.org/S4306401660","display_name":"Aberystwyth Research portal (Aberystwyth University)","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I16038530","host_organization_name":"Aberystwyth University","host_organization_lineage":["https://openalex.org/I16038530"],"host_organization_lineage_names":[],"type":"repository"},"license":null,"license_id":null,"version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":"","raw_type":""},{"id":"pmh:oai:pure.atira.dk:publications/a1aea352-8f04-4e62-a319-475e87650fe6","is_oa":false,"landing_page_url":"https://www.research.manchester.ac.uk/portal/en/publications/an-investigation-into-the-population-abundance-distribution-of-mrnas-proteins-and-metabolites-in-biological-systems(a1aea352-8f04-4e62-a319-475e87650fe6).html","pdf_url":null,"source":{"id":"https://openalex.org/S4306400662","display_name":"Research Explorer (The University of Manchester)","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I28407311","host_organization_name":"University of Manchester","host_organization_lineage":["https://openalex.org/I28407311"],"host_organization_lineage_names":[],"type":"repository"},"license":null,"license_id":null,"version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":"Lu, C & King, R D 2009, 'An investigation into the population abundance distribution of mRNAs, proteins, and metabolites in biological systems', Bioinformatics, vol. 25, no. 16, pp. 2020-2027. https://doi.org/10.1093/bioinformatics/btp360","raw_type":"info:eu-repo/semantics/publishedVersion"}],"best_oa_location":{"id":"doi:10.1093/bioinformatics/btp360","is_oa":true,"landing_page_url":"https://doi.org/10.1093/bioinformatics/btp360","pdf_url":"https://academic.oup.com/bioinformatics/article-pdf/25/16/2020/48994458/bioinformatics_25_16_2020.pdf","source":{"id":"https://openalex.org/S52395412","display_name":"Bioinformatics","issn_l":"1367-4803","issn":["1367-4803","1367-4811"],"is_oa":false,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310311648","host_organization_name":"Oxford University Press","host_organization_lineage":["https://openalex.org/P4310311648","https://openalex.org/P4310311647"],"host_organization_lineage_names":["Oxford University Press","University of Oxford"],"type":"journal"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Bioinformatics","raw_type":"journal-article"},"sustainable_development_goals":[{"id":"https://metadata.un.org/sdg/16","score":0.7900000214576721,"display_name":"Peace, Justice and strong institutions"}],"awards":[{"id":"https://openalex.org/G5246289129","display_name":null,"funder_award_id":"BB/F008228/1","funder_id":"https://openalex.org/F4320334629","funder_display_name":"Biotechnology and Biological Sciences Research Council"},{"id":"https://openalex.org/G8105896295","display_name":null,"funder_award_id":"201142","funder_id":"https://openalex.org/F4320334629","funder_display_name":"Biotechnology and Biological Sciences Research Council"}],"funders":[{"id":"https://openalex.org/F4320334629","display_name":"Biotechnology and Biological Sciences Research Council","ror":"https://ror.org/00cwqg982"}],"has_content":{"grobid_xml":true,"pdf":true},"content_urls":{"pdf":"https://content.openalex.org/works/W2096896397.pdf","grobid_xml":"https://content.openalex.org/works/W2096896397.grobid-xml"},"referenced_works_count":56,"referenced_works":["https://openalex.org/W1509562192","https://openalex.org/W1604709973","https://openalex.org/W1965942536","https://openalex.org/W1970070519","https://openalex.org/W1980509985","https://openalex.org/W1984708728","https://openalex.org/W1993009001","https://openalex.org/W1993333483","https://openalex.org/W1993803315","https://openalex.org/W2008620264","https://openalex.org/W2009312009","https://openalex.org/W2010637767","https://openalex.org/W2015988291","https://openalex.org/W2017586482","https://openalex.org/W2027358346","https://openalex.org/W2041592203","https://openalex.org/W2043151125","https://openalex.org/W2047765648","https://openalex.org/W2048596679","https://openalex.org/W2057464142","https://openalex.org/W2059053384","https://openalex.org/W2059068174","https://openalex.org/W2066718232","https://openalex.org/W2069353545","https://openalex.org/W2072099326","https://openalex.org/W2074280444","https://openalex.org/W2082731642","https://openalex.org/W2084862934","https://openalex.org/W2092247630","https://openalex.org/W2100637689","https://openalex.org/W2103017472","https://openalex.org/W2106554405","https://openalex.org/W2115368299","https://openalex.org/W2115592362","https://openalex.org/W2117327695","https://openalex.org/W2122121413","https://openalex.org/W2130790725","https://openalex.org/W2133743912","https://openalex.org/W2135869163","https://openalex.org/W2142072523","https://openalex.org/W2144885342","https://openalex.org/W2146997097","https://openalex.org/W2148101811","https://openalex.org/W2148192047","https://openalex.org/W2151253576","https://openalex.org/W2152054335","https://openalex.org/W2153624566","https://openalex.org/W2156246479","https://openalex.org/W2159460045","https://openalex.org/W2165681080","https://openalex.org/W2264709743","https://openalex.org/W2503212997","https://openalex.org/W3103786587","https://openalex.org/W4211085285","https://openalex.org/W4294326454","https://openalex.org/W6681446040"],"related_works":["https://openalex.org/W2082860237","https://openalex.org/W2119695867","https://openalex.org/W2130076355","https://openalex.org/W1990804418","https://openalex.org/W1993764875","https://openalex.org/W2046158694","https://openalex.org/W2788277189","https://openalex.org/W4291196608","https://openalex.org/W2376357553","https://openalex.org/W4253099572"],"abstract_inverted_index":{"We":[0,90],"compared":[1],"the":[2,37,47,56,61,99,104,115,125,128,133],"observed":[3,65],"empirical":[4,134],"distributions":[5,32,135],"with":[6],"a":[7,43,51,69,108],"number":[8,109],"of":[9,63,110,124,132],"distributions:":[10],"power":[11,52],"law,":[12],"lognormal,":[13,106],"loglogistic,":[14],"loggamma,":[15],"right":[16],"Pareto-lognormal":[17],"(PLN)":[18],"and":[19,28,49,107],"double":[20],"PLN":[21],"(dPLN).":[22],"The":[23,78],"best-fit":[24],"for":[25],"mRNA,":[26],"protein":[27],"metabolite":[29],"population":[30],"abundance":[31],"was":[33],"found":[34],"to":[35],"be":[36],"dPLN.":[38],"This":[39,142],"distribution":[40,45,54,79],"behaves":[41],"like":[42,50],"lognormal":[44,130],"around":[46],"centre,":[48],"law":[53],"in":[55,87,127],"tails.":[57],"To":[58],"better":[59],"understand":[60],"cause":[62],"this":[64],"distribution,":[66],"we":[67],"explored":[68],"simple":[70],"stochastic":[71],"model":[72],"based":[73],"on":[74],"geometric":[75],"Brownian":[76],"motion.":[77],"indicates":[80,143],"that":[81,92,144],"multiplicative":[82],"effects":[83,94],"are":[84,136],"causally":[85],"dominant":[86],"biological":[88],"systems.":[89],"speculate":[91],"these":[93],"arise":[95],"from":[96],"chemical":[97],"reactions:":[98],"central-limit":[100],"theorem":[101],"then":[102],"explains":[103],"central":[105,129],"possible":[111],"mechanisms":[112],"could":[113],"explain":[114],"long":[116],"tails:":[117],"positive":[118],"feedback,":[119],"network":[120],"topology,":[121],"etc.":[122],"Many":[123],"components":[126],"parts":[131],"unidentified":[137],"and/or":[138],"have":[139],"unknown":[140],"function.":[141],"much":[145],"more":[146],"biology":[147],"awaits":[148],"discovery.":[149]},"counts_by_year":[{"year":2026,"cited_by_count":1},{"year":2025,"cited_by_count":3},{"year":2024,"cited_by_count":1},{"year":2023,"cited_by_count":1},{"year":2022,"cited_by_count":4},{"year":2021,"cited_by_count":1},{"year":2020,"cited_by_count":1},{"year":2019,"cited_by_count":3},{"year":2018,"cited_by_count":4},{"year":2017,"cited_by_count":2},{"year":2016,"cited_by_count":6},{"year":2015,"cited_by_count":4},{"year":2014,"cited_by_count":6},{"year":2013,"cited_by_count":6},{"year":2012,"cited_by_count":3}],"updated_date":"2026-04-10T15:06:20.359241","created_date":"2025-10-10T00:00:00"}
